branch master updated (69355e1 -> 19e5fb6)

benwoodcroft pushed a change to branch master in repository guix. from 69355e1 doc: Add a Git hook that verifies signatures before pushing. new 8e941f2 gnu: ruby-hoe: Update to 3.16.0. new 19e5fb6 gnu: ruby-nokogiri: Update to 1.7.0.1. The 2 revisions listed above

01/02: gnu: diamond: Update to 0.8.31.

benwoodcroft pushed a commit to branch master in repository guix. commit 322a583fcfff9f5173ad388ee876aa29d9f8edcc Author: Ben Woodcroft <donttrust...@gmail.com> Date: Sun Jan 1 16:29:11 2017 +1000 gnu: diamond: Update to 0.8.31. * gnu/packages/bioinformatics.scm (diamond):

branch master updated (7fc2d37 -> 25d84d3)

benwoodcroft pushed a change to branch master in repository guix. from 7fc2d37 gnu: nagios: Update to 4.2.4 [fixes CVE-2016-{9565,9566}]. new 322a583 gnu: diamond: Update to 0.8.31. new 25d84d3 gnu: python-dendropy: Update to 4.2.0. The 2 revisions listed above as

02/02: gnu: python-dendropy: Update to 4.2.0.

benwoodcroft pushed a commit to branch master in repository guix. commit 25d84d3122b8de29a67d69e8ff5de6660b8d44c5 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Sun Jan 1 16:37:08 2017 +1000 gnu: python-dendropy: Update to 4.2.0. * gnu/packages/bioinformatics.scm (

01/01: gnu: multiqc: Update to 0.9.

benwoodcroft pushed a commit to branch master in repository guix. commit a29929b32caf9e437d18bdb0cd4d1b22bc096fed Author: Ben Woodcroft <donttrust...@gmail.com> Date: Fri Dec 30 17:21:37 2016 +1000 gnu: multiqc: Update to 0.9. Suggested by Raoul Bonnal <ilpuccio.f...@

branch master updated (95d7d0c -> a29929b)

benwoodcroft pushed a change to branch master in repository guix. from 95d7d0c gnu: elogind: Enable ACL support. new a29929b gnu: multiqc: Update to 0.9. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The

branch master updated (c976b31 -> 9916ef8)

benwoodcroft pushed a change to branch master in repository guix. from c976b31 gnu: python-stem: Update to 1.5.3. new 9916ef8 gnu: diamond: Update to 0.8.30. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails.

01/01: gnu: diamond: Update to 0.8.30.

benwoodcroft pushed a commit to branch master in repository guix. commit 9916ef8bb6e83855c2a7a4e972747610b410a3ed Author: Ben Woodcroft <donttrust...@gmail.com> Date: Tue Dec 27 09:18:05 2016 +1000 gnu: diamond: Update to 0.8.30. * gnu/packages/bioinformatics.scm (diamond):

01/01: gnu: ruby-minitest: Update to 5.10.1.

benwoodcroft pushed a commit to branch master in repository guix. commit f1775db66089d6b69b8061c00432ef04eb970840 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Mon Dec 26 22:43:59 2016 +1000 gnu: ruby-minitest: Update to 5.10.1. * gnu/packages/ruby.scm (ruby-mi

branch master updated (328398e -> f1775db)

benwoodcroft pushed a change to branch master in repository guix. from 328398e gnu: Add ripit. new f1775db gnu: ruby-minitest: Update to 5.10.1. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions

02/02: gnu: r: Update to 3.3.2.

© 2016 Pjotr Prins <pjotr.g...@thebird.nl> ;;; Copyright © 2016 Roel Janssen <r...@gnu.org> ;;; Copyright © 2016 Ben Woodcroft <donttrust...@gmail.com> +;;; Copyright © 2016 Raoul Bonnal <ilpuccio.f...@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -101,7 +102,7 @@

branch master updated (a32d0c8 -> a1814e4)

benwoodcroft pushed a change to branch master in repository guix. from a32d0c8 gnu: sane-backends: Remove timestamps from the output. new 3fffabc gnu: Add attribution line for Raoul Bonnal. new a1814e4 gnu: r: Update to 3.3.2. The 2 revisions listed above as "new"

01/02: gnu: Add attribution line for Raoul Bonnal.

benwoodcroft pushed a commit to branch master in repository guix. commit 3fffabce2a0e7013379d090a72199df703d5e66d Author: Ben Woodcroft <donttrust...@gmail.com> Date: Sun Dec 18 09:57:32 2016 +1000 gnu: Add attribution line for Raoul Bonnal. This is a follow-up

01/01: gnu: star: Update to 2.5.2b.

2.5.2b. [source]: Delete precompiled binary. Co-authored-by: Ben Woodcroft <donttrust...@gmail.com> --- gnu/packages/bioinformatics.scm |5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm i

branch master updated (51ad11a -> c9e9154)

benwoodcroft pushed a change to branch master in repository guix. from 51ad11a gnu: Add fatfsck-static. new c9e9154 gnu: star: Update to 2.5.2b. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions

01/02: gnu: Add r-bit.

benwoodcroft pushed a commit to branch master in repository guix. commit 42066e6b4aa3670c6cb07558d391fdba07c83b46 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Mon Dec 12 20:59:43 2016 +1000 gnu: Add r-bit. * gnu/packages/statistics.scm (r-bit): New variable. --

branch master updated (5a38494 -> ce3f92e)

benwoodcroft pushed a change to branch master in repository guix. from 5a38494 gnu: linux-libre: Update to 4.9. new 42066e6 gnu: Add r-bit. new ce3f92e gnu: Add r-bit64. The 2 revisions listed above as "new" are entirely new to this repository and will be described

02/02: gnu: Add r-bit64.

benwoodcroft pushed a commit to branch master in repository guix. commit ce3f92e7018e140f5e6b7333a604f26506de6c2a Author: Ben Woodcroft <donttrust...@gmail.com> Date: Mon Dec 12 21:11:48 2016 +1000 gnu: Add r-bit64. * gnu/packages/statistics.scm (r-bit64): New variable. --

01/02: gnu: orfm: Update to 0.6.1.

benwoodcroft pushed a commit to branch master in repository guix. commit ced1c496aa16d9c4c9a7c512c6763e09896c36fb Author: Ben Woodcroft <donttrust...@gmail.com> Date: Tue Dec 13 20:00:50 2016 +1000 gnu: orfm: Update to 0.6.1. * gnu/packages/bioinformatics.scm (orfm):

02/02: gnu: diamond: Update to 0.8.29.

benwoodcroft pushed a commit to branch master in repository guix. commit 991e143d25e590af5c1b3c81ffd253c7b1de1d5c Author: Ben Woodcroft <donttrust...@gmail.com> Date: Tue Dec 13 20:01:56 2016 +1000 gnu: diamond: Update to 0.8.29. * gnu/packages/bioinformatics.scm (diamond):

01/01: gnu: orfm: Update to 0.6.0.

benwoodcroft pushed a commit to branch master in repository guix. commit 2df3d147efcbe040d50f104479856fe9033c1716 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Mon Dec 12 20:49:03 2016 +1000 gnu: orfm: Update to 0.6.0. * gnu/packages/bioinformatics.scm (orfm):

branch master updated (23b40c6 -> 2df3d14)

benwoodcroft pushed a change to branch master in repository guix. from 23b40c6 gnu: direnv: Update to 2.10.0. new 2df3d14 gnu: orfm: Update to 0.6.0. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The

01/02: gnu: pardre: Update to 1.1.5-1.

benwoodcroft pushed a commit to branch master in repository guix. commit 7922ab8fe87154f3ccaa7daf9304632f974fbe5d Author: Ben Woodcroft <donttrust...@gmail.com> Date: Sat Dec 10 10:31:15 2016 +1000 gnu: pardre: Update to 1.1.5-1. * gnu/packages/bioinformatics.scm (pardre):

02/02: gnu: vsearch: Update to 2.3.4.

benwoodcroft pushed a commit to branch master in repository guix. commit a225db529337035b159b2b75714ee18753c26d21 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Sat Dec 10 10:45:08 2016 +1000 gnu: vsearch: Update to 2.3.4. * gnu/packages/bioinformatics.scm (vsearch):

branch master updated (6b2921c -> a225db5)

benwoodcroft pushed a change to branch master in repository guix. from 6b2921c gnu: linux-libre: Add fixes for CVE-2016-8655 et al. new 7922ab8 gnu: pardre: Update to 1.1.5-1. new a225db5 gnu: vsearch: Update to 2.3.4. The 2 revisions listed above as "new" are

01/02: gnu: Adjust gemspec modifications for ruby-2.3.2.

benwoodcroft pushed a commit to branch staging in repository guix. commit 71596c3ce66ef9269c21d85f815e2f473ab6c7a1 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Sat Dec 10 07:40:47 2016 +1000 gnu: Adjust gemspec modifications for ruby-2.3.2. * gnu/packages/ruby.scm

branch staging updated (f80b4d2 -> fdf3a68)

benwoodcroft pushed a change to branch staging in repository guix. from f80b4d2 Merge remote-tracking branch 'origin/master' into staging new 71596c3 gnu: Adjust gemspec modifications for ruby-2.3.2. new fdf3a68 gnu: ruby-sdoc: Update to 0.4.2. The 2 revisions listed

02/02: gnu: ruby-sdoc: Update to 0.4.2.

benwoodcroft pushed a commit to branch staging in repository guix. commit fdf3a68d9e95ed1b70cc9751b9a2ce26babfce33 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Fri Dec 9 19:27:12 2016 +1000 gnu: ruby-sdoc: Update to 0.4.2. * gnu/packages/ruby.scm (ruby-sdoc):

branch master updated (cb72d34 -> 1b7f17e)

benwoodcroft pushed a change to branch master in repository guix. from cb72d34 gnu: libreoffice: Add 'libreoffice' symlink. new 1b7f17e gnu: vsearch: Update to 2.3.3. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate

01/01: gnu: vsearch: Update to 2.3.3.

benwoodcroft pushed a commit to branch master in repository guix. commit 1b7f17ef90bcd8fc83cc985cc94ac984dcc2a07a Author: Ben Woodcroft <donttrust...@gmail.com> Date: Thu Dec 8 22:39:10 2016 +1000 gnu: vsearch: Update to 2.3.3. * gnu/packages/bioinformatics.scm (vsearch):

01/01: gnu: Add newick-utils.

benwoodcroft pushed a commit to branch master in repository guix. commit 9926875572cf2936b7f23fb291328bfa68c038c6 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Sun Nov 27 13:11:46 2016 +1000 gnu: Add newick-utils. * gnu/packages/bioinformatics.scm (newick-utils

branch master updated (aa28ecc -> 9926875)

benwoodcroft pushed a change to branch master in repository guix. from aa28ecc pull: Hack to allow compilation with older Guile-SSH packages. new 9926875 gnu: Add newick-utils. The 1 revisions listed above as "new" are entirely new to this repository and will be described in

01/02: gnu: Add proteinortho.

benwoodcroft pushed a commit to branch master in repository guix. commit 31a9d653ad37c9f00b601cfe4a95d90c35c09223 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Sat Nov 26 14:59:30 2016 +1000 gnu: Add proteinortho. * gnu/packages/bioinformatics.scm (proteinortho

02/02: gnu: roary: Update to 3.7.0.

benwoodcroft pushed a commit to branch master in repository guix. commit 5e0a0f4226b1f146fe74c8347fc983ef9ac0d271 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Sat Nov 26 19:00:17 2016 +1000 gnu: roary: Update to 3.7.0. * gnu/packages/bioinformatics.scm (roary):

branch master updated (d3eff97 -> 5e0a0f4)

benwoodcroft pushed a change to branch master in repository guix. from d3eff97 gnu: Add python-polib. new 31a9d65 gnu: Add proteinortho. new 5e0a0f4 gnu: roary: Update to 3.7.0. The 2 revisions listed above as "new" are entirely new to this repository and will be

branch master updated (8e5f8c9 -> ee7518a)

benwoodcroft pushed a change to branch master in repository guix. from 8e5f8c9 gnu: diamond: Update to 0.8.27. new ee7518a gnu: ruby: Update replacement to 2.3.3. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate

01/01: gnu: ruby: Update replacement to 2.3.3.

benwoodcroft pushed a commit to branch master in repository guix. commit ee7518a009f2595879bb7e0275fa1f7ba8740819 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Tue Nov 22 21:39:18 2016 +1000 gnu: ruby: Update replacement to 2.3.3. * gnu/packages/ruby.scm (ruby)[repla

branch staging updated (856f30b -> f4a8081)

benwoodcroft pushed a change to branch staging in repository guix. from 856f30b gnu: shared-mime-info: Update to 1.7 new f4a8081 gnu: ruby: Update to 2.3.3. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The

01/01: gnu: ruby: Update to 2.3.3.

benwoodcroft pushed a commit to branch staging in repository guix. commit f4a8081d2485944fd6fe6dc412e8b25f7de709d3 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Tue Nov 22 21:35:58 2016 +1000 gnu: ruby: Update to 2.3.3. * gnu/packages/ruby.scm (ruby): Update to

branch master updated (1ea7969 -> 8e5f8c9)

benwoodcroft pushed a change to branch master in repository guix. from 1ea7969 gnu: zynaddsubfx: Update to 3.0.0. new 8e5f8c9 gnu: diamond: Update to 0.8.27. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails.

01/01: gnu: diamond: Update to 0.8.27.

benwoodcroft pushed a commit to branch master in repository guix. commit 8e5f8c98e21932cc6bc58c0f976d650b2323c087 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Tue Nov 22 20:47:56 2016 +1000 gnu: diamond: Update to 0.8.27. * gnu/packages/bioinformatics.scm (diamond):

branch staging updated (caa9b83 -> 66b1bac)

benwoodcroft pushed a change to branch staging in repository guix. from caa9b83 guxi: cmake-build-system: Enable output for failing test-cases. new 66b1bac gnu: ruby: Update to 2.3.2. The 1 revisions listed above as "new" are entirely new to this repository and will be

01/01: gnu: ruby: Update to 2.3.2.

benwoodcroft pushed a commit to branch staging in repository guix. commit 66b1bac355dbe57625891e08c82056b567e42e65 Author: Ben J Woodcroft Date: Sat Nov 19 07:35:21 2016 +1000 gnu: ruby: Update to 2.3.2. * gnu/packages/ruby.scm (ruby): Update to 2.3.2.

branch master updated (966a543 -> 9b62c5a)

benwoodcroft pushed a change to branch master in repository guix. from 966a543 gnu: Use 'mirror://' URLs in several places. new 9b62c5a gnu: ruby: Replace with ruby-2.3.2 [fixes CVE-2015-3900]. The 1 revisions listed above as "new" are entirely new to this repository and will

01/01: gnu: ruby: Replace with ruby-2.3.2 [fixes CVE-2015-3900].

benwoodcroft pushed a commit to branch master in repository guix. commit 9b62c5a8fb588aac5002b899e3b1a3b0ac1bb428 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Sat Nov 19 09:00:22 2016 +1000 gnu: ruby: Replace with ruby-2.3.2 [fixes CVE-2015-3900]. * gnu/packages/ru

branch master updated (4af8027 -> 6689c63)

benwoodcroft pushed a change to branch master in repository guix. from 4af8027 gnu: ruby-2.2: Update to 2.2.6. new 6689c63 gnu: Add ruby-net-http-digest-auth. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails.

01/01: gnu: Add ruby-net-http-digest-auth.

benwoodcroft pushed a commit to branch master in repository guix. commit 6689c636d039ce5bf160c1858b99f4329427fd15 Author: Muriithi Frederick Muriuki Date: Thu Nov 17 17:33:01 2016 +1000 gnu: Add ruby-net-http-digest-auth. * gnu/packages/ruby.scm

01/01: gnu: ruby-2.2: Update to 2.2.6.

benwoodcroft pushed a commit to branch master in repository guix. commit 4af80275a87fceeb2dcc7cf5198bb7f12d911d0f Author: Ben J Woodcroft Date: Fri Nov 18 15:42:44 2016 +1000 gnu: ruby-2.2: Update to 2.2.6. * gnu/packages/ruby.scm (ruby-2.2): Update to

branch master updated (175d626 -> 4af8027)

benwoodcroft pushed a change to branch master in repository guix. from 175d626 gnu: mps-youtube: Disable tests. new 4af8027 gnu: ruby-2.2: Update to 2.2.6. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The

branch master updated (e2bb2e1 -> 8be62d3)

benwoodcroft pushed a change to branch master in repository guix. from e2bb2e1 gnu: ruby-yard: Update to 0.9.5-1.d816482a. new bb4bcb0 gnu: bundler: Update to 1.13.6. new c594911 gnu: ruby-rspec-core: Update to 3.5.4. new 81d0bd2 gnu: ruby-hoe: Update to

05/06: gnu: ruby-arel: Update to 7.1.4.

benwoodcroft pushed a commit to branch master in repository guix. commit e87dfdee865c6d73e272d734a6f4cf0e019c91aa Author: Ben Woodcroft <donttrust...@gmail.com> Date: Fri Nov 11 22:48:22 2016 +1000 gnu: ruby-arel: Update to 7.1.4. * gnu/packages/ruby.scm (ruby-arel):

03/06: gnu: ruby-hoe: Update to 3.15.2.

benwoodcroft pushed a commit to branch master in repository guix. commit 81d0bd2f443049e50be3927c24b7cdb3bf445b83 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Fri Nov 11 22:44:03 2016 +1000 gnu: ruby-hoe: Update to 3.15.2. * gnu/packages/ruby.scm (ruby-hoe):

04/06: gnu: ruby-rake-compiler: Update to 1.0.1.

benwoodcroft pushed a commit to branch master in repository guix. commit 16d8d8b289feccb5aacc18437177a05fa0f46df6 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Fri Nov 11 22:45:38 2016 +1000 gnu: ruby-rake-compiler: Update to 1.0.1. * gnu/packages/ruby.scm (rub

06/06: gnu: ruby-lumberjack: Update to 1.0.10.

benwoodcroft pushed a commit to branch master in repository guix. commit 8be62d3f2031a1c0b046b8840948359dac104ac3 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Fri Nov 11 22:49:19 2016 +1000 gnu: ruby-lumberjack: Update to 1.0.10. * gnu/packages/ruby.scm (ruby-lumb

02/06: gnu: ruby-rspec-core: Update to 3.5.4.

benwoodcroft pushed a commit to branch master in repository guix. commit c59491183a3eff24da52d46dabe99ef1c29df8f5 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Fri Nov 11 22:40:39 2016 +1000 gnu: ruby-rspec-core: Update to 3.5.4. * gnu/packages/ruby.scm (ruby-rspe

01/06: gnu: bundler: Update to 1.13.6.

benwoodcroft pushed a commit to branch master in repository guix. commit bb4bcb02c269b9de72bbe1a3de9af5cbbea88451 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Fri Nov 11 22:38:13 2016 +1000 gnu: bundler: Update to 1.13.6. * gnu/packages/ruby.scm (bundler): Update to

01/01: gnu: ruby-yard: Update to 0.9.5-1.d816482a.

benwoodcroft pushed a commit to branch master in repository guix. commit e2bb2e1780ce875cc03cd5cc559f1dbc528d6f8e Author: Ben Woodcroft <donttrust...@gmail.com> Date: Tue Nov 8 09:39:47 2016 +1000 gnu: ruby-yard: Update to 0.9.5-1.d816482a. * gnu/packages/ruby.scm (rub

branch master updated (7c45670 -> e2bb2e1)

benwoodcroft pushed a change to branch master in repository guix. from 7c45670 gnu: r-org-mm-eg-db: Update to 3.4.0. new e2bb2e1 gnu: ruby-yard: Update to 0.9.5-1.d816482a. The 1 revisions listed above as "new" are entirely new to this repository and will be described in

05/07: gnu: ruby-shoulda-context: Update to 1.2.2.

benwoodcroft pushed a commit to branch master in repository guix. commit e7d1d472cdd05f3de048e33c6a9b88212a0b059a Author: Ben Woodcroft <donttrust...@gmail.com> Date: Mon Nov 7 21:35:07 2016 +1000 gnu: ruby-shoulda-context: Update to 1.2.2. * gnu/packages/ruby.scm (ruby-s

03/07: gnu: ruby-http-cookie: Update to 1.0.3.

benwoodcroft pushed a commit to branch master in repository guix. commit 2a2eb07d87e8c1e1947b3cfb02071d37e3c6db20 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Mon Nov 7 21:33:41 2016 +1000 gnu: ruby-http-cookie: Update to 1.0.3. * gnu/packages/ruby.scm (ruby-http-

07/07: gnu: ruby-tzinfo-data: Update to 1.2016.9.

benwoodcroft pushed a commit to branch master in repository guix. commit 06028aed7c4faab5d3442feff49d117027116a30 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Mon Nov 7 21:36:24 2016 +1000 gnu: ruby-tzinfo-data: Update to 1.2016.9. * gnu/packages/ruby.scm (ruby-tzinf

04/07: gnu: ruby-domain-name: Update to 0.5.20161021.

benwoodcroft pushed a commit to branch master in repository guix. commit ca0839142e827e3d4b930f9b9e6eea7097f9b977 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Mon Nov 7 21:34:15 2016 +1000 gnu: ruby-domain-name: Update to 0.5.20161021. * gnu/packages/ruby.scm (ruby-

branch master updated (bd91748 -> 06028ae)

benwoodcroft pushed a change to branch master in repository guix. from bd91748 gnu: texmaker: Use modular qt and qtwebkit. new 3cf7c31 gnu: diamond: Update to 0.8.26. new 420fdfe gnu: ruby-sequel: Update to 4.40.0. new 2a2eb07 gnu: ruby-http-cookie: Update

01/07: gnu: diamond: Update to 0.8.26.

benwoodcroft pushed a commit to branch master in repository guix. commit 3cf7c3172080d5a7f442058c4145949b71e1201c Author: Ben Woodcroft <donttrust...@gmail.com> Date: Mon Nov 7 21:31:09 2016 +1000 gnu: diamond: Update to 0.8.26. * gnu/packages/bioinformatics.scm (diamond):

02/07: gnu: ruby-sequel: Update to 4.40.0.

benwoodcroft pushed a commit to branch master in repository guix. commit 420fdfef9a386f49c3cda0eabf9747c866a07007 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Mon Nov 7 21:32:32 2016 +1000 gnu: ruby-sequel: Update to 4.40.0. * gnu/packages/ruby.scm (ruby-sequel):

06/07: gnu: ruby-sqlite3: Update to 1.3.12.

benwoodcroft pushed a commit to branch master in repository guix. commit 17ba688c4900d147fb404ab52d74facae9fef9aa Author: Ben Woodcroft <donttrust...@gmail.com> Date: Mon Nov 7 21:35:31 2016 +1000 gnu: ruby-sqlite3: Update to 1.3.12. * gnu/packages/ruby.scm (ruby-sqlite3):

01/02: gnu: bundler: Update to 1.13.5.

benwoodcroft pushed a commit to branch master in repository guix. commit b8004a7b797fda093fdf6675437cbdc1dd8a103a Author: Ben Woodcroft <donttrust...@gmail.com> Date: Mon Oct 17 18:27:27 2016 +1000 gnu: bundler: Update to 1.13.5. * gnu/packages/ruby.scm (bundler): Update to

02/02: gnu: ruby-json-pure: Fix tests.

benwoodcroft pushed a commit to branch master in repository guix. commit a8de0d1ec411aa1ecb744cb93c6188baa93c2b76 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Mon Oct 17 19:13:38 2016 +1000 gnu: ruby-json-pure: Fix tests. * gnu/packages/ruby.scm (ruby-json-pure)[arg

branch master updated (cb0866c -> a8de0d1)

benwoodcroft pushed a change to branch master in repository guix. from cb0866c gnu: Add geierlein. new b8004a7 gnu: bundler: Update to 1.13.5. new a8de0d1 gnu: ruby-json-pure: Fix tests. The 2 revisions listed above as "new" are entirely new to this repository and

01/01: gnu: vsearch: Update to 2.3.0.

benwoodcroft pushed a commit to branch master in repository guix. commit 3dd50d974b63cb9c2d934164ac8d8d1b86fa3dc1 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Tue Oct 11 22:29:48 2016 +1000 gnu: vsearch: Update to 2.3.0. * gnu/packages/bioinformatics.scm (vsearch):

branch master updated (99c9056 -> 3dd50d9)

benwoodcroft pushed a change to branch master in repository guix. from 99c9056 gnu: diamond: Update to 0.8.23. new 3dd50d9 gnu: vsearch: Update to 2.3.0. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The

01/01: gnu: diamond: Update to 0.8.23.

benwoodcroft pushed a commit to branch master in repository guix. commit 99c90561418bc572b096d0961d4e5dc0d6658d45 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Tue Oct 11 19:51:49 2016 +1000 gnu: diamond: Update to 0.8.23. * gnu/packages/bioinformatics.scm (diamond):

branch master updated (75fa191 -> 99c9056)

benwoodcroft pushed a change to branch master in repository guix. from 75fa191 Update e-mail address for ng0. new 99c9056 gnu: diamond: Update to 0.8.23. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The

branch master updated (7fd30d1 -> 53aec09)

benwoodcroft pushed a change to branch master in repository guix. from 7fd30d1 gnu: yoshimi: Update to 1.4.1. new d91cb67 gnu: ruby-sequel: Update to 4.39.0. new a751afb gnu: r-mgcv: Update to 1.8-15. new 5ed00e1 gnu: ruby-domain-name: Update to

05/07: gnu: ruby-mime-types-data: Update to 3.2016.0521.

benwoodcroft pushed a commit to branch master in repository guix. commit f49511dbff6e9041381b98562257f9e9651ccae4 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Fri Sep 23 23:22:14 2016 +1000 gnu: ruby-mime-types-data: Update to 3.2016.0521. * gnu/packages/ruby.scm

04/07: gnu: ruby-tzinfo-data: Update to 1.2016.7.

benwoodcroft pushed a commit to branch master in repository guix. commit d034c779eb8b6b1b873a3bbbd1726cecad394c4e Author: Ben Woodcroft <donttrust...@gmail.com> Date: Fri Sep 23 23:21:11 2016 +1000 gnu: ruby-tzinfo-data: Update to 1.2016.7. * gnu/packages/ruby.scm (ruby-

06/07: gnu: python-xlrd: Update to 1.0.0.

benwoodcroft pushed a commit to branch master in repository guix. commit c2ad4d701e43250f745b914ba8d00accd9463f26 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Fri Sep 23 23:37:02 2016 +1000 gnu: python-xlrd: Update to 1.0.0. * gnu/packages/python.scm (python-xlrd, p

01/07: gnu: ruby-sequel: Update to 4.39.0.

benwoodcroft pushed a commit to branch master in repository guix. commit d91cb67dd721793676d23d1aed7f26522d41164e Author: Ben Woodcroft <donttrust...@gmail.com> Date: Fri Sep 23 23:13:08 2016 +1000 gnu: ruby-sequel: Update to 4.39.0. * gnu/packages/ruby.scm (ruby-sequel):

07/07: gnu: bundler: Update to 1.13.2.

benwoodcroft pushed a commit to branch master in repository guix. commit 53aec0999f5f5e2183d439c356dc1d7df6202a50 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Sat Oct 8 22:13:47 2016 +1000 gnu: bundler: Update to 1.13.2. * gnu/packages/ruby.scm (bundler): Update to

03/07: gnu: ruby-domain-name: Update to 0.5.20160826.

benwoodcroft pushed a commit to branch master in repository guix. commit 5ed00e13d26db380a422c8ae6b7601be49430962 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Fri Sep 23 23:19:29 2016 +1000 gnu: ruby-domain-name: Update to 0.5.20160826. * gnu/packages/ruby.scm (ruby-

02/07: gnu: r-mgcv: Update to 1.8-15.

benwoodcroft pushed a commit to branch master in repository guix. commit a751afb21753a6039574db04522719edd81c1056 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Fri Sep 23 23:15:19 2016 +1000 gnu: r-mgcv: Update to 1.8-15. * gnu/packages/statistics.scm (r-mgcv):

01/01: gnu: python2-dendropy: Fix tests.

benwoodcroft pushed a commit to branch master in repository guix. commit 9602e3cce95264d563804d372f44a0d88bad3e9f Author: Ben Woodcroft <donttrust...@gmail.com> Date: Sat Oct 8 21:33:43 2016 +1000 gnu: python2-dendropy: Fix tests. * gnu/packages/bioinformatics.scm (p

branch master updated (f803f77 -> 9602e3c)

benwoodcroft pushed a change to branch master in repository guix. from f803f77 gnu: vigra: Workaround rounding error in test suite on 32-bit CPUs. new 9602e3c gnu: python2-dendropy: Fix tests. The 1 revisions listed above as "new" are entirely new to this repository and will

branch master updated (10bc741 -> 4bdc3df)

benwoodcroft pushed a change to branch master in repository guix. from 10bc741 gnu: ffmpeg: Update to 3.1.4. new 4bdc3df gnu: vsearch: Update to 2.1.2. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The

01/01: gnu: vsearch: Update to 2.1.2.

benwoodcroft pushed a commit to branch master in repository guix. commit 4bdc3df92dc4c673b328e59cd9d2ab6ffcc51e6b Author: Ben Woodcroft <donttrust...@gmail.com> Date: Sun Oct 2 22:25:39 2016 +1000 gnu: vsearch: Update to 2.1.2. * gnu/packages/bioinformatics.scm (vsearch):

01/09: gnu: python-pysam: Update to 0.9.1.4.

benwoodcroft pushed a commit to branch master in repository guix. commit fd49eb213f53e6030d94f8b50446b5985952c380 Author: Marius Bakke Date: Fri Sep 16 18:05:15 2016 +0100 gnu: python-pysam: Update to 0.9.1.4. * gnu/packages/bioinformatics.scm (python-pysam,

05/09: gnu: python-pysam: Use 'modify-phases'.

benwoodcroft pushed a commit to branch master in repository guix. commit 397d463a12b719146ffe4f444f5f3e83cee4794e Author: Marius Bakke Date: Fri Sep 23 06:40:40 2016 +0100 gnu: python-pysam: Use 'modify-phases'. * gnu/packages/bioinformatics.scm

07/09: gnu: python-pysam: Enable tests.

benwoodcroft pushed a commit to branch master in repository guix. commit f536dce522e08315c468f60448507af2cac619ac Author: Marius Bakke Date: Thu Sep 22 14:11:59 2016 +0100 gnu: python-pysam: Enable tests. * gnu/packages/bioinformatics.scm

03/09: gnu: python2-pbcore: Update to 1.2.10.

benwoodcroft pushed a commit to branch master in repository guix. commit e301bfc886c90acc1a82dc64ff3a15481396f540 Author: Marius Bakke Date: Sat Sep 17 10:42:56 2016 +0100 gnu: python2-pbcore: Update to 1.2.10. * gnu/packages/bioinformatics.scm

08/09: gnu: Add python-termcolor.

benwoodcroft pushed a commit to branch master in repository guix. commit 67f66812f5ef1bfba59cfd53ace6f41196cd0227 Author: Ben J Woodcroft Date: Mon Sep 26 15:26:17 2016 +1000 gnu: Add python-termcolor. * gnu/packages/python.scm (python-termcolor,

06/09: gnu: python-pysam: Delete bundled htslib.

benwoodcroft pushed a commit to branch master in repository guix. commit dff26b2363c1735e3d84e0dbd2b958760b08f848 Author: Marius Bakke Date: Thu Sep 22 14:08:05 2016 +0100 gnu: python-pysam: Delete bundled htslib. * gnu/packages/bioinformatics.scm

04/09: gnu: Add bcftools.

benwoodcroft pushed a commit to branch master in repository guix. commit bdc7be59ebfdce21184ccacb863414d0cbf6fae6 Author: Marius Bakke Date: Thu Sep 22 13:47:53 2016 +0100 gnu: Add bcftools. * gnu/packages/bioinformatics.scm (bcftools): New variable. ---

02/09: gnu: Add python-pyxb.

benwoodcroft pushed a commit to branch master in repository guix. commit c2efe1aea8e17b5b59a964623857008931fc352a Author: Marius Bakke Date: Sat Sep 17 10:33:28 2016 +0100 gnu: Add python-pyxb. * gnu/packages/xml.scm (python-pyxb, python2-pyxb): New

branch master updated (8a54c0e -> 99caa6f)

benwoodcroft pushed a change to branch master in repository guix. from 8a54c0e guix build: Gracefully handle packages without source for '-S'. new fd49eb2 gnu: python-pysam: Update to 0.9.1.4. new c2efe1a gnu: Add python-pyxb. new e301bfc gnu:

09/09: gnu: python-plastid: Update to 1.4.6.

benwoodcroft pushed a commit to branch master in repository guix. commit 99caa6f75f8e737cbadab8fdd4148c33946a3028 Author: Ben J Woodcroft Date: Mon Sep 26 14:19:29 2016 +1000 gnu: python-plastid: Update to 1.4.6. * gnu/packages/bioinformatics.scm

branch master updated (204adc3 -> af8de20)

benwoodcroft pushed a change to branch master in repository guix. from 204adc3 gnu: azr3: Fix libsigc++ build errors. new af8de20 gnu: vsearch: Update to 2.1.1. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails.

01/01: gnu: vsearch: Update to 2.1.1.

benwoodcroft pushed a commit to branch master in repository guix. commit af8de20386bc38305ca653becdfb260d3a9a39de Author: Ben Woodcroft <donttrust...@gmail.com> Date: Mon Sep 26 20:35:32 2016 +1000 gnu: vsearch: Update to 2.1.1. * gnu/packages/bioinformatics.scm (vsearch):

branch core-updates updated (b5b5105 -> 9f2989b)

benwoodcroft pushed a change to branch core-updates in repository guix. from b5b5105 gnu: xorg-server: Set default font path to empty. new 9f2989b gnu: perl: Split configure phase. The 1 revisions listed above as "new" are entirely new to this repository and will be described

01/01: gnu: perl: Split configure phase.

benwoodcroft pushed a commit to branch core-updates in repository guix. commit 9f2989b6cc526b86c457c449dc14aeed0745d287 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Mon Sep 19 21:11:19 2016 +1000 gnu: perl: Split configure phase. * gnu/packages/perl.scm (perl)[arg

01/01: gnu: diamond: Update to 0.8.22.

benwoodcroft pushed a commit to branch master in repository guix. commit 951da521a9bb94a70eb750198bafe031e4ea8411 Author: Ben Woodcroft <donttrust...@gmail.com> Date: Thu Sep 22 16:36:00 2016 +1000 gnu: diamond: Update to 0.8.22. * gnu/packages/bioinformatics.scm (diamond):

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