benwoodcroft pushed a commit to branch master
in repository guix.
commit 70f1bc051a5e06e14acde6cfe8fcaace656adbf4
Author: Ben Woodcroft
Date: Tue Jul 12 15:59:52 2016 +1000
gnu: Add bpp-seq.
* gnu/packages/bioinformatics.scm (bpp-seq): New variable.
---
gnu/packages
benwoodcroft pushed a commit to branch master
in repository guix.
commit 176345c5b2455a7c9e31996fcc9b505fe1fe4e6e
Author: Ben Woodcroft
Date: Tue Jul 12 15:07:59 2016 +1000
gnu: Add perl-xml-writer.
* gnu/packages/perl.scm (perl-xml-writer): New variable.
---
gnu/packages
benwoodcroft pushed a commit to branch master
in repository guix.
commit 791c11d6a0214afd03ead2aab25a8852f4305405
Author: Ben Woodcroft
Date: Tue Jul 12 15:56:07 2016 +1000
gnu: Add mcl.
* gnu/packages/machine-learning.scm (mcl): New variable.
---
gnu/packages/machine
benwoodcroft pushed a commit to branch master
in repository guix.
commit f82cef25cae00bda3e019a8e056b76f001f0f425
Author: Ben Woodcroft
Date: Sun Jul 17 23:47:29 2016 +1000
gnu: Add perl-test-files.
* gnu/packages/perl.scm (perl-test-files): New variable.
---
gnu/packages
benwoodcroft pushed a commit to branch master
in repository guix.
commit 608dd932674def26c02bb255ebabcb62442f1093
Author: Ben Woodcroft
Date: Tue Jul 12 16:17:29 2016 +1000
gnu: Add raxml.
* gnu/packages/bioinformatics.scm (raxml): New variable.
---
gnu/packages
benwoodcroft pushed a commit to branch master
in repository guix.
commit 5e2b27b045292250c8fc22fd4c188003d3eaffcf
Author: Ben Woodcroft
Date: Tue Jul 12 15:13:26 2016 +1000
gnu: Add perl-parse-yapp.
* gnu/packages/perl.scm (perl-parse-yapp): New variable.
---
gnu/packages
benwoodcroft pushed a commit to branch master
in repository guix.
commit 5eec378b799912012d1cc55bad64dbb3ac46d8a9
Author: Ben Woodcroft
Date: Tue Jul 12 15:19:15 2016 +1000
gnu: Add perl-graph-readwrite.
* gnu/packages/xml.scm (perl-graph-readwrite): New variable.
---
gnu
benwoodcroft pushed a commit to branch master
in repository guix.
commit 159a70167883b0b4d5237b7ef3493b54356f362e
Author: Ben Woodcroft
Date: Tue Jul 12 16:02:45 2016 +1000
gnu: Add bpp-popgen.
* gnu/packages/bioinformatics.scm (bpp-popgen): New variable.
---
gnu/packages
benwoodcroft pushed a commit to branch master
in repository guix.
commit b33fdcc488ab4f22c9e9911538bf1412ef71ea5c
Author: Ben Woodcroft
Date: Tue Jul 12 15:47:53 2016 +1000
gnu: Add perl-file-grep.
* gnu/packages/perl.scm (perl-file-grep): New variable.
---
gnu/packages/perl.scm
benwoodcroft pushed a change to branch master
in repository guix.
from 7d229e2 gnu: offlineimap: Update to 7.0.4.
new 47bc991 gnu: parallel: Use full paths for executables.
new 176345c gnu: Add perl-xml-writer.
new 5e2b27b gnu: Add perl-parse-yapp.
new
benwoodcroft pushed a commit to branch master
in repository guix.
commit b1ed9cf191b069d47f99b5bee53ffd9863834568
Author: Ben Woodcroft
Date: Tue Jul 12 15:44:39 2016 +1000
gnu: Add perl-file-path.
* gnu/packages/perl.scm (perl-file-path): New variable.
---
gnu/packages/perl.scm
benwoodcroft pushed a commit to branch master
in repository guix.
commit 024130d2581b8dcdc0954b3c375afda29815806e
Author: Ben Woodcroft
Date: Tue Jul 12 16:10:45 2016 +1000
gnu: Add prank.
* gnu/packages/bioinformatics.scm (prank): New variable.
---
gnu/packages
benwoodcroft pushed a change to branch master
in repository guix.
from 9e12eba gnu: Add python-biom-format.
new 1817d30 gnu: ruby-cucumber-core: Update to 1.5.0.
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benwoodcroft pushed a commit to branch master
in repository guix.
commit 1817d30ad359e1d501526fd476f736563a371643
Author: Ben Woodcroft
Date: Sat Aug 6 21:37:37 2016 +1000
gnu: ruby-cucumber-core: Update to 1.5.0.
* gnu/packages/ruby.scm (ruby-cucumber-core): Update to 1.5.0
benwoodcroft pushed a commit to branch master
in repository guix.
commit 9e12eba866d893b4a95577aebf0fc25b4ca2119f
Author: Ben Woodcroft
Date: Sun Apr 24 21:59:02 2016 +1000
gnu: Add python-biom-format.
* gnu/packages/bioinformatics.scm (python-biom-format,
python2-biom-format
benwoodcroft pushed a commit to branch master
in repository guix.
commit da4ac1aaa44ef6a68756fe35d15182c8228d6099
Author: Ben Woodcroft
Date: Mon Apr 11 21:18:37 2016 +1000
gnu: Add python-future.
* gnu/packages/python.scm (python-future, python2-future): New
variables
benwoodcroft pushed a change to branch master
in repository guix.
from fd34d4f gnu: icedtea-8: Update to 3.1.0.
new da4ac1a gnu: Add python-future.
new 9e12eba gnu: Add python-biom-format.
The 2 revisions listed above as "new" are entirely new to this
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benwoodcroft pushed a commit to branch master
in repository guix.
commit 752bb44794b27a10b968c3191140431b1d10b65c
Author: Ben Woodcroft
Date: Thu Aug 4 20:02:01 2016 +1000
gnu: python2-bz2file: Use python-2.
This is a followup to 124df723a0150e968910e34d5e94023b18901d0c
benwoodcroft pushed a change to branch master
in repository guix.
from 2470d77 gnu: qt: Update to 5.6.1-1.
new 752bb44 gnu: python2-bz2file: Use python-2.
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benwoodcroft pushed a commit to branch master
in repository guix.
commit afde1a264b3c34a6ccd5ee44855cdc6824149284
Author: Ben Woodcroft
Date: Wed Aug 3 21:22:02 2016 +1000
gnu: fxtract: Restrict to x86_64-linux.
* gnu/packages/bioinformatics.scm (fxtract)[supported-systems
benwoodcroft pushed a change to branch master
in repository guix.
from 124df72 gnu: python-bz2file: Disable tests.
new afde1a2 gnu: fxtract: Restrict to x86_64-linux.
The 1 revisions listed above as "new" are entirely new to this
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benwoodcroft pushed a commit to branch master
in repository guix.
commit 124df723a0150e968910e34d5e94023b18901d0c
Author: Ben Woodcroft
Date: Wed Aug 3 21:01:40 2016 +1000
gnu: python-bz2file: Disable tests.
* gnu/packages/python.scm (python-bz2file)[arguments]: Disable
tests
benwoodcroft pushed a change to branch master
in repository guix.
from 12b63ab gnu: zsh: Move to shells.scm.
new 124df72 gnu: python-bz2file: Disable tests.
The 1 revisions listed above as "new" are entirely new to this
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benwoodcroft pushed a commit to branch master
in repository guix.
commit 7b01f250e406d4112959cb1099da5e73a099fe0f
Author: Ben J Woodcroft
Date: Mon Aug 1 11:27:00 2016 +1000
gnu: ruby-nokogiri: Update to 1.6.8.
* gnu/packages/ruby.scm (ruby-nokogiri): Update to 1.6.8.
[argumen
benwoodcroft pushed a commit to branch master
in repository guix.
commit 26af1c8d13dfc08f6b703dbd3d6add95ffb1d220
Author: Ben Woodcroft
Date: Mon Aug 1 20:35:01 2016 +1000
gnu: ruby-ffi: Update to 1.9.14.
* gnu/packages/ruby.scm (ruby-ffi): Update to 1.9.14.
---
gnu/packages
benwoodcroft pushed a change to branch master
in repository guix.
from 683a4a3 gnu: openssh: Add dependency on xauth.
new 2de61e3 gnu: Add ruby-pkg-config.
new 7b01f25 gnu: ruby-nokogiri: Update to 1.6.8.
new 26af1c8 gnu: ruby-ffi: Update to 1.9.14.
The 3 re
benwoodcroft pushed a commit to branch master
in repository guix.
commit 2de61e340c286b036d4cb8dea91c0f8709aac0bf
Author: Ben J Woodcroft
Date: Mon Aug 1 11:52:52 2016 +1000
gnu: Add ruby-pkg-config.
* gnu/packages/ruby.scm (ruby-pkg-config): New variable.
---
gnu/packages/ruby.s
benwoodcroft pushed a change to branch master
in repository guix.
from 9b12bc7 gnu: gnunet-gtk: Configure with gnunet path.
new c4382cd gnu: diamond: Update to 0.8.17.
The 1 revisions listed above as "new" are entirely new to this
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benwoodcroft pushed a commit to branch master
in repository guix.
commit c4382cd18f497506d873a0afbcb8d8caa3a4b4ad
Author: Ben Woodcroft
Date: Sat Jul 30 23:02:57 2016 +1000
gnu: diamond: Update to 0.8.17.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.17.
---
gnu
benwoodcroft pushed a commit to branch master
in repository guix.
commit 2c9f6251fc4e60ad84b3698e53879060ce50ee48
Author: Ben Woodcroft
Date: Thu Jul 28 21:17:32 2016 +1000
gnu: r-bsgenome: Update to 1.40.1.
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.40.1
benwoodcroft pushed a commit to branch master
in repository guix.
commit b0f0778a7c040b1f3f409681f24491d0610a3a21
Author: Ben Woodcroft
Date: Thu Jul 28 21:10:05 2016 +1000
gnu: r-iranges: Update to 2.6.1.
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.6.1.
---
gnu
benwoodcroft pushed a commit to branch master
in repository guix.
commit f403941f811b54873511d0cd2c9da2c54cffb82f
Author: Ben Woodcroft
Date: Thu Jul 28 21:09:41 2016 +1000
gnu: r-limma: Update to 3.28.17.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.28.17.
---
gnu
benwoodcroft pushed a commit to branch master
in repository guix.
commit bab15ccec478d119ab197a2576422e6a08f2338f
Author: Ben Woodcroft
Date: Thu Jul 28 21:09:06 2016 +1000
gnu: r-annotationdbi: Update to 1.34.4.
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to
benwoodcroft pushed a commit to branch master
in repository guix.
commit 2b2ff0bd917cad949a974dd0e584e2b1f7ad6a5d
Author: Ben Woodcroft
Date: Thu Jul 28 21:09:25 2016 +1000
gnu: r-xvector: Update to 0.12.1.
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.12.1.
---
gnu
benwoodcroft pushed a commit to branch master
in repository guix.
commit 2a3e325f5e0a3ccb27ab6c1730d488e5ac0b536d
Author: Ben Woodcroft
Date: Thu Jul 28 20:52:50 2016 +1000
gnu: r-genomeinfodb: Update to 1.8.3.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.3
benwoodcroft pushed a commit to branch master
in repository guix.
commit 6547708f718316dac79de845aabb7220122385a7
Author: Ben Woodcroft
Date: Thu Jul 28 21:54:44 2016 +1000
gnu: r-genomicfeatures: Update to 1.24.5.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to
benwoodcroft pushed a commit to branch master
in repository guix.
commit 5131e210644857217fdf9bf0e824d1f51b983f3d
Author: Ben Woodcroft
Date: Thu Jul 28 21:07:15 2016 +1000
gnu: r-rtracklayer: Update to 1.32.2.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.32.2
benwoodcroft pushed a commit to branch master
in repository guix.
commit a463055862e0b1e37bab41f76bb10537af5c42e8
Author: Ben Woodcroft
Date: Thu Jul 28 21:09:16 2016 +1000
gnu: r-genomicranges: Update to 1.24.2.
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to
benwoodcroft pushed a commit to branch master
in repository guix.
commit d104fc607d885c945a66b13255629c1fbffa14dc
Author: Ben Woodcroft
Date: Thu Jul 28 21:08:33 2016 +1000
gnu: r-biostrings: Update to 2.40.2.
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.40.2
benwoodcroft pushed a commit to branch master
in repository guix.
commit 1864e051c9cf9bf58fee7800e99a692b25edaf69
Author: Ben Woodcroft
Date: Thu Jul 28 21:07:44 2016 +1000
gnu: r-summarizedexperiment: Update to 1.2.3.
* gnu/packages/bioinformatics.scm (r-summarizedexperiment
benwoodcroft pushed a commit to branch master
in repository guix.
commit 29b0cc8ad57952e9f4dd30cd5966117f848a69b6
Author: Ben Woodcroft
Date: Thu Jul 28 21:07:34 2016 +1000
gnu: r-genomicalignments: Update to 1.8.4.
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update
benwoodcroft pushed a change to branch master
in repository guix.
from f2e7917 gnu: r-s4vectors: Update to 0.10.2.
new 2a3e325 gnu: r-genomeinfodb: Update to 1.8.3.
new 5131e21 gnu: r-rtracklayer: Update to 1.32.2.
new 29b0cc8 gnu: r-genomicalignments: Update
benwoodcroft pushed a commit to branch master
in repository guix.
commit a22999f245a32b1e58fe8916392bc1b2712d1b3c
Author: Ben Woodcroft
Date: Thu Jul 28 21:08:42 2016 +1000
gnu: r-biocparallel: Update to 1.6.3.
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.3
benwoodcroft pushed a commit to branch core-updates
in repository guix.
commit 2d88825183c74d3726a609d6cbd58ef4c2aa0046
Author: Ben Woodcroft
Date: Thu Jul 28 20:34:00 2016 +1000
gnu: r-genomicfeatures: Update to 1.24.5.
* gnu/packages/bioinformatics.scm (r-genomicfeatures
benwoodcroft pushed a commit to branch core-updates
in repository guix.
commit 362f39d6672f52c4c0839ac6b0d0e2a679e9ddee
Author: Ben Woodcroft
Date: Thu Jul 28 21:09:16 2016 +1000
gnu: r-genomicranges: Update to 1.24.2.
* gnu/packages/bioinformatics.scm (r-genomicranges): Update
benwoodcroft pushed a change to branch core-updates
in repository guix.
from d6dfc39 gnu: r-s4vectors: Update to 0.10.2.
new 2d88825 gnu: r-genomicfeatures: Update to 1.24.5.
new 303163c gnu: r-genomeinfodb: Update to 1.8.3.
new 380d3f8 gnu: r-rtracklayer: Up
benwoodcroft pushed a commit to branch core-updates
in repository guix.
commit 0d159d84e2bbd6140ce524cfe330ea2973a843de
Author: Ben Woodcroft
Date: Thu Jul 28 21:07:44 2016 +1000
gnu: r-summarizedexperiment: Update to 1.2.3.
* gnu/packages/bioinformatics.scm (r
benwoodcroft pushed a commit to branch core-updates
in repository guix.
commit 303163c7b99fa299904107601118edb0eaffcb92
Author: Ben Woodcroft
Date: Thu Jul 28 20:52:50 2016 +1000
gnu: r-genomeinfodb: Update to 1.8.3.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to
benwoodcroft pushed a commit to branch core-updates
in repository guix.
commit e426cd7421d18db15a925c1aff58bacccdd3c63a
Author: Ben Woodcroft
Date: Thu Jul 28 21:10:05 2016 +1000
gnu: r-iranges: Update to 2.6.1.
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.6.1
benwoodcroft pushed a commit to branch core-updates
in repository guix.
commit ae32c58e2836f1c83609ebbb9eb9a632b63bae49
Author: Ben Woodcroft
Date: Thu Jul 28 21:17:32 2016 +1000
gnu: r-bsgenome: Update to 1.40.1.
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.40.1
benwoodcroft pushed a commit to branch core-updates
in repository guix.
commit 1c4ad6076c8a1667b13eb62bef8ca678fe5e8510
Author: Ben Woodcroft
Date: Thu Jul 28 21:09:41 2016 +1000
gnu: r-limma: Update to 3.28.17.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.28.17
benwoodcroft pushed a commit to branch core-updates
in repository guix.
commit 7a0594fb5d724b7bc331dbaf96e6c6421ed9bb07
Author: Ben Woodcroft
Date: Thu Jul 28 21:08:42 2016 +1000
gnu: r-biocparallel: Update to 1.6.3.
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to
benwoodcroft pushed a commit to branch core-updates
in repository guix.
commit ae60f3801acb0c2dbaaa30761a505881fd9a660e
Author: Ben Woodcroft
Date: Thu Jul 28 21:09:06 2016 +1000
gnu: r-annotationdbi: Update to 1.34.4.
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update
benwoodcroft pushed a commit to branch core-updates
in repository guix.
commit 380d3f8657d4700a4d37e78ae8e6bef717c3da93
Author: Ben Woodcroft
Date: Thu Jul 28 21:07:15 2016 +1000
gnu: r-rtracklayer: Update to 1.32.2.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to
benwoodcroft pushed a commit to branch core-updates
in repository guix.
commit 658f36e56951385642823df6f5b6957d242781f7
Author: Ben Woodcroft
Date: Thu Jul 28 21:08:33 2016 +1000
gnu: r-biostrings: Update to 2.40.2.
* gnu/packages/bioinformatics.scm (r-biostrings): Update to
benwoodcroft pushed a commit to branch core-updates
in repository guix.
commit 722b4c919dcc761247ecf79ff5d5d89a467789cb
Author: Ben Woodcroft
Date: Thu Jul 28 21:07:34 2016 +1000
gnu: r-genomicalignments: Update to 1.8.4.
* gnu/packages/bioinformatics.scm (r-genomicalignments
benwoodcroft pushed a commit to branch core-updates
in repository guix.
commit bd0cc378347bbf1edf2a05ffb16dd58c3e34e66a
Author: Ben Woodcroft
Date: Thu Jul 28 21:09:25 2016 +1000
gnu: r-xvector: Update to 0.12.1.
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.12.1
benwoodcroft pushed a change to branch master
in repository guix.
from e335b82 gnu: mysql: Update to 5.7.13 [fixes
CVE-2016-{3477,3521,3615,5440}].
new f2e7917 gnu: r-s4vectors: Update to 0.10.2.
The 1 revisions listed above as "new" are entirely new to this
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benwoodcroft pushed a commit to branch master
in repository guix.
commit f2e791750be25b95540807c2e01c07625b65666c
Author: Ben Woodcroft
Date: Thu Jul 28 20:13:42 2016 +1000
gnu: r-s4vectors: Update to 0.10.2.
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.10.2
benwoodcroft pushed a commit to branch master
in repository guix.
commit 9712ef8d426375f7bc1975ed4076663176c48735
Author: Ben Woodcroft
Date: Wed Jul 27 23:39:46 2016 +1000
gnu: krona-tools: Update to 2.7.
* gnu/packages/web.scm (krona-tools): Update to 2.7.
[arguments
benwoodcroft pushed a change to branch master
in repository guix.
from 12c8f21 gnu: diamond: Update to 0.8.16.
new 9712ef8 gnu: krona-tools: Update to 2.7.
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from fd6830b gnu: guix: Update revision number in version.
new 12c8f21 gnu: diamond: Update to 0.8.16.
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benwoodcroft pushed a commit to branch master
in repository guix.
commit 12c8f210ee6ba184fd77ebd0566c8cc4855e9636
Author: Ben Woodcroft
Date: Wed Jul 27 23:12:54 2016 +1000
gnu: diamond: Update to 0.8.16.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.16.
---
gnu
benwoodcroft pushed a commit to branch master
in repository guix.
commit e03a51530450e85f88dd36ad459f06950eb906ea
Author: Ben Woodcroft
Date: Sat Jul 23 15:15:12 2016 +1000
gnu: fasttree: Update to 2.1.9.
* gnu/packages/bioinformatics.scm (fasttree): Update to 2.1.9.
---
gnu
benwoodcroft pushed a change to branch master
in repository guix.
from 26ad4ad gnu: wesnoth: Update to 1.12.6.
new e03a515 gnu: fasttree: Update to 2.1.9.
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from 67eb385 gnu: hoedown: Update to 3.0.7.
new 7593e50 gnu: diamond: Update to 0.8.15.
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benwoodcroft pushed a commit to branch master
in repository guix.
commit 7593e50b2635330edb5e82aa767dac7c12d92660
Author: Ben Woodcroft
Date: Mon Jul 18 00:06:21 2016 +1000
gnu: diamond: Update to 0.8.15.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.15.
---
gnu
benwoodcroft pushed a change to branch master
in repository guix.
from cdd8e07 gnu: Add Tmux Themepack.
new 51d8039 gnu: parallel: Update to 20160622.
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commit 51d8039b4ac53dc2f4e0978f6547d5948166c837
Author: Ben Woodcroft
Date: Tue Jul 12 14:02:13 2016 +1000
gnu: parallel: Update to 20160622.
* gnu/packages/parallel.scm (parallel): Update to 20160622.
---
gnu
benwoodcroft pushed a change to branch master
in repository guix.
from 0e74bb5 gnu: Add gnome-mpv.
new 7f575d3 gnu: diamond: Update to 0.8.12.
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benwoodcroft pushed a commit to branch master
in repository guix.
commit 7f575d3e56539689517117b51401c39489bb3685
Author: Ben Woodcroft
Date: Sun Jul 10 22:31:32 2016 +1000
gnu: diamond: Update to 0.8.12.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.12.
---
gnu
benwoodcroft pushed a change to branch master
in repository guix.
from c11f79a gnu: star: Restrict supported systems to 64-bit systems.
new ec2a67d gnu: Add python-dendropy.
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benwoodcroft pushed a commit to branch master
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commit ec2a67de8813dc7ea31c9825c6dfe6f27ad86344
Author: Ben Woodcroft
Date: Sat Apr 23 13:38:43 2016 +1000
gnu: Add python-dendropy.
* gnu/packages/bioinformatics.scm (python-dendropy, python2-dendropy): New
benwoodcroft pushed a change to branch master
in repository guix.
from 71ca053 gnu: rxvt-unicode: Update to 9.22.
new c11f79a gnu: star: Restrict supported systems to 64-bit systems.
The 1 revisions listed above as "new" are entirely new to this
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benwoodcroft pushed a commit to branch master
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commit c11f79a49ee64800c44929ec072e9b1f8b0765d0
Author: Ben Woodcroft
Date: Fri Jul 8 22:08:16 2016 +1000
gnu: star: Restrict supported systems to 64-bit systems.
* gnu/packages/bioinformatics.scm (star)[supported
benwoodcroft pushed a change to branch master
in repository guix.
from 7c7643a gnu: diamond: Update to 0.8.11.
new d285657 gnu: bedtools: Update to 2.26.0.
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commit d285657eae743ec2e00b3ad7962349268e68a473
Author: Ben Woodcroft
Date: Thu Jul 7 23:27:19 2016 +1000
gnu: bedtools: Update to 2.26.0.
* gnu/packages/bioinformatics.scm (bedtools): Update to 2.26.0.
---
gnu
benwoodcroft pushed a commit to branch master
in repository guix.
commit 7c7643a7f0ec9ffc41686d24b9d46e36d6af7811
Author: Ben Woodcroft
Date: Thu Jul 7 17:54:45 2016 +0800
gnu: diamond: Update to 0.8.11.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.11.
---
gnu
benwoodcroft pushed a change to branch master
in repository guix.
from 0b166a7 gnu: quassel: Build with modular qt.
new 7c7643a gnu: diamond: Update to 0.8.11.
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benwoodcroft pushed a commit to branch master
in repository guix.
commit 975cd29a986a04aa6a77d5ad5131e4df4466cf41
Author: Ben Woodcroft
Date: Tue Jul 5 20:54:39 2016 +0800
gnu: r-ggplot2: Add r-svglite to propagated-inputs.
* gnu/packages/statistics.scm (r-ggplot2)[propagated
benwoodcroft pushed a commit to branch master
in repository guix.
commit c5940b157e149c9cb220a9f4af97b07d3ed21e59
Author: Ben Woodcroft
Date: Tue Jul 5 20:46:24 2016 +0800
gnu: Add r-gdtools.
* gnu/packages/statistics.scm (r-gdtools): New variable.
---
gnu/packages
benwoodcroft pushed a commit to branch master
in repository guix.
commit 3aebedcc021faf72f7a002ce29a4de427366304b
Author: Ben Woodcroft
Date: Tue Jul 5 20:50:27 2016 +0800
gnu: Add r-svglite.
* gnu/packages/statistics.scm (r-svglite): New variable.
---
gnu/packages
benwoodcroft pushed a change to branch master
in repository guix.
from 6baa83d gnu: sudo: Update to 1.8.17p1.
new c5940b1 gnu: Add r-gdtools.
new 3aebedc gnu: Add r-svglite.
new 975cd29 gnu: r-ggplot2: Add r-svglite to propagated-inputs.
The 3 revisions list
benwoodcroft pushed a change to branch master
in repository guix.
from 84d08af gnu: busybox: Use 'modify-phases'.
new c7f0451 gnu: Add r-glmnet.
new 71830f0 gnu: vsearch: Update to 2.0.1.
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benwoodcroft pushed a commit to branch master
in repository guix.
commit 71830f0e494692a8e2163f599e28438dc9df7d87
Author: Ben Woodcroft
Date: Fri Jul 1 08:59:14 2016 +1000
gnu: vsearch: Update to 2.0.1.
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.0.1.
---
gnu
benwoodcroft pushed a commit to branch master
in repository guix.
commit c7f04517a6795933c2adafa037fe6c79c90d4cc4
Author: Ben Woodcroft
Date: Thu Jun 30 11:19:15 2016 +1000
gnu: Add r-glmnet.
* gnu/packages/statistics.scm (r-glmnet): New variable.
---
gnu/packages/statistics.scm
benwoodcroft pushed a commit to branch master
in repository guix.
commit 8dec2229a2ac97e2bf340e9b7ddefdbf60dbb95d
Author: Ben Woodcroft
Date: Wed Jun 29 17:17:23 2016 +1000
gnu: blast+: Update to 2.4.0.
* gnu/packages/bioinformatics.scm (blast+): Update to 2.4.0.
---
gnu
benwoodcroft pushed a change to branch master
in repository guix.
from bc3a2e3 gnu: ceres-solver: Depend on glog.
new 8dec222 gnu: blast+: Update to 2.4.0.
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benwoodcroft pushed a commit to branch master
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commit 3bce0f14b2deca678c5339cb41422dd4e4b465fa
Author: Ben Woodcroft
Date: Wed Jun 29 10:13:22 2016 +1000
gnu: star: Update to 2.5.2a.
* gnu/packages/bioinformatics.scm (star): Update to 2.5.2a.
---
gnu/packages
benwoodcroft pushed a commit to branch master
in repository guix.
commit 6c737963f6accdba18df1a648d0372e526e8f937
Author: Ben Woodcroft
Date: Wed Jun 29 09:47:15 2016 +1000
gnu: htslib: Update to 1.3.1.
* gnu/packages/bioinformatics.scm (htslib): Update to 1.3.1.
---
gnu
benwoodcroft pushed a change to branch master
in repository guix.
from ec94663 gnu: Add SEEK.
new 6c73796 gnu: htslib: Update to 1.3.1.
new 3bce0f1 gnu: star: Update to 2.5.2a.
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benwoodcroft pushed a change to branch master
in repository guix.
from 48d4ce6 Revert "gnu: qtbase: Don't propagate mesa."
new d6e374a gnu: mafft: Update to 7.299.
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benwoodcroft pushed a commit to branch master
in repository guix.
commit d6e374a0d9a71fac7f3946aaa56205d25d99916d
Author: Ben Woodcroft
Date: Tue Jun 28 21:40:08 2016 +1000
gnu: mafft: Update to 7.299.
* gnu/packages/bioinformatics.scm (mafft): Update to 7.299.
---
gnu/packages
benwoodcroft pushed a commit to branch master
in repository guix.
commit 45469ebe528df81e6c3a7b4aa5a42f914dc28acd
Author: Ben Woodcroft
Date: Tue Jun 28 21:28:06 2016 +1000
gnu: metabat: Update to 0.26.3.
* gnu/packages/bioinformatics.scm (metabat): Update to 0.26.3
benwoodcroft pushed a change to branch master
in repository guix.
from af45244 gnu: diamond: Update to 0.8.9.
new 45469eb gnu: metabat: Update to 0.26.3.
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benwoodcroft pushed a commit to branch master
in repository guix.
commit af45244e3662d324f37923c7fa120e49673b3ad2
Author: Ben Woodcroft
Date: Tue Jun 28 19:31:25 2016 +1000
gnu: diamond: Update to 0.8.9.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.9.
---
gnu
benwoodcroft pushed a change to branch master
in repository guix.
from 05e9f30 gnu: r: Add pango to inputs.
new af45244 gnu: diamond: Update to 0.8.9.
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benwoodcroft pushed a commit to branch master
in repository guix.
commit 9ded1457172d38960258c8a2b695ffb0d33ad8c9
Author: Ben Woodcroft
Date: Tue Jun 14 15:53:33 2016 +1000
gnu: Add python-screed.
* gnu/packages/bioinformatics.scm (python-screed, python2-screed):
New
benwoodcroft pushed a change to branch master
in repository guix.
from 095b7fe gnu: qttools: Update to 5.6.1-1.
new 9ded145 gnu: Add python-screed.
new 94ff315 gnu: Add khmer.
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benwoodcroft pushed a commit to branch master
in repository guix.
commit 94ff31572d37e9e49813b2e1fddd323cde0103e4
Author: Ben Woodcroft
Date: Wed Jun 15 12:21:20 2016 +1000
gnu: Add khmer.
* gnu/packages/bioinformatics.scm (khmer): New variable.
* gnu/packages/patches/khmer
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