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from 6e46836 gnu: imagemagick: Update to 6.9.4-9.
new d95e8e0 gnu: Add emacs-rainbow-identifiers.
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commit d95e8e0170f7d4f9c50921379e89192425a65038
Author: Roel Janssen <r...@gnu.org>
Date: Sun Jun 12 23:23:23 2016 +0200
gnu: Add emacs-rainbow-identifiers.
* gnu/packages/emacs.scm (emacs-rainbow-identifiers
roelj pushed a commit to branch master
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commit b92d02d9783f6a3f16fb4384dbc1c695f714154a
Author: Roel Janssen <r...@gnu.org>
Date: Fri Jun 10 14:45:41 2016 +0200
gnu: Add sparql-query.
* gnu/packages/databases.scm (sparql-query): New variable.
---
gnu/pa
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from aece760 gnu: qtbase: Update to 5.6.1.
new b92d02d gnu: Add sparql-query.
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commit 4791876ce15fd4dd78c6688059fc6de7b61eee02
Author: Roel Janssen <r...@gnu.org>
Date: Tue May 24 21:23:31 2016 +0200
gnu: Add texmaker.
* gnu/packages/tex.scm (texmaker): New variable.
---
gnu/packages/tex.scm
roelj pushed a commit to branch master
in repository guix.
commit 8f9ac90182c022c69600f17ef9c1149e029bc301
Author: Roel Janssen <r...@gnu.org>
Date: Tue May 24 21:18:53 2016 +0200
gnu: Rename texlive module to tex.
* gnu/local.mk (GNU_SYSTEM_MODULES): Rename texlive.scm to t
roelj pushed a change to branch master
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from 5bed95e gnu: aria2: Update to 1.23.0.
new 8f9ac90 gnu: Rename texlive module to tex.
new 4791876 gnu: Add texmaker.
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inputs]: Remove unnecessary imagemagick dependency.
[phases]: Use modify-phases.
* gnu/packages/patches/calibre-drop-unrar.patch: Update
for new version.
Signed-off-by: Roel Janssen <r...@gnu.org>
---
gnu/packages/ebook.scm| 14
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from cad7e6a system: Source /etc/environment before
$HOME/.guix-profile/etc/profile.
new b111bdb gnu: calibre: Update to 2.63.0.
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commit 091963c69b517a97aaf2cad62e700ecb6c855a93
Author: Roel Janssen <r...@gnu.org>
Date: Tue Jul 5 16:12:23 2016 +0200
gnu: Add perltidy.
* gnu/packages/perl.scm (perltidy): New variable.
---
gnu/packages/perl.scm
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from 1f1b20b gnu: Add bits.
new 091963c gnu: Add perltidy.
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commit 41184943ae77bdc097f375be5b946800b9825d64
Author: Roel Janssen <r...@gnu.org>
Date: Wed Jul 6 13:25:50 2016 +0200
gnu: Add emacs-ess.
* gnu/packages/emacs.scm (emacs-ess): New variable.
---
gnu/packages/ema
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from 4118494 gnu: Add emacs-ess.
new 8f82641 gnu: Add emacs-hl-todo.
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commit 8f82641ac97a126c799d4b807db9fb4a056f8227
Author: Roel Janssen <r...@gnu.org>
Date: Wed Jul 6 19:02:13 2016 +0200
gnu: Add emacs-hl-todo.
* gnu/packages/emacs.scm (emacs-hl-todo): New variable.
---
gnu/pa
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from 7d4224d gnu: Add r-limma.
new 744004a gnu: Add r-edger.
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from 7034791 gnu: Add emacs-eprime.
new 7d4224d gnu: Add r-limma.
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commit 744004a31f5463a1fa3cd367fee7f4a242651da8
Author: Roel Janssen <r...@gnu.org>
Date: Mon Jul 4 14:49:07 2016 +0200
gnu: Add r-edger.
* gnu/packages/bioinformatics.scm (r-edger): New variable.
---
gnu/pa
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from 42c4b24 gnu: python2-pythondialog: Update to 3.4.0.
new fa8af53 gnu: Add scrollkeeper.
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commit fa8af53e99afd932b2e534a428ea6ac62581c89d
Author: Roel Janssen <r...@gnu.org>
Date: Mon Jul 4 21:32:31 2016 +0200
gnu: Add scrollkeeper.
* gnu/packages/documentation.scm (scrollkeeper): New variable.
--
roelj pushed a commit to branch master
in repository guix.
commit 7d4224d7942868d3cdcf2438dcb5a2f9e46f2f07
Author: Roel Janssen <r...@gnu.org>
Date: Mon Jul 4 14:39:16 2016 +0200
gnu: Add r-limma.
* gnu/packages/bioinformatics.scm (r-limma): New variable.
---
gnu/pa
roelj pushed a commit to branch master
in repository guix.
commit aa3eeeb5420524a2ba23b8484534cefe5ab181a9
Author: Roel Janssen <r...@gnu.org>
Date: Mon Jan 30 12:11:04 2017 +0100
gnu: Add r-bsgenome-hsapiens-1000genomes-hs37d5.
* gnu/packages/bioinformatics.scm (r-bs
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from 01be4f9 gnu: Add light.
new aa3eeeb gnu: Add r-bsgenome-hsapiens-1000genomes-hs37d5.
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from e26bec5 gnu: epiphany: Update to 3.20.3.
new fd297f4 gnu: disk: Use license: prefix.
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commit fd297f4ae642bc29c9be30ca575ae72afadb0b9a
Author: Roel Janssen <r...@gnu.org>
Date: Sun Aug 21 22:54:29 2016 +0200
gnu: disk: Use license: prefix.
* gnu/packages/disk.scm (define-module): Import guix li
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from fd297f4 gnu: disk: Use license: prefix.
new c20e552 gnu: Add gparted.
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commit c20e552baf1ecb96f8d3d910b621d5f38e78276b
Author: Roel Janssen <r...@gnu.org>
Date: Sun Aug 21 23:39:19 2016 +0200
gnu: Add gparted.
* gnu/packages/disk.scm (gparted): New variable.
---
gnu/packages/disk.scm
roelj pushed a commit to branch master
in repository guix.
commit fd59105c49965db956fac73c68d8b00d068f5d5c
Author: Roel Janssen <r...@gnu.org>
Date: Sun Aug 28 16:22:19 2016 +0200
guix scripts: Disable grafting on dry runs.
* guix/scripts/archive.scm, guix/scripts/bui
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from d03db74 system: Do not create the home directory of "nobody".
new fd59105 guix scripts: Disable grafting on dry runs.
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commit 7500e42b3e51fa9ba5fb2ba552f168081b7f044a
Author: Roel Janssen <r...@gnu.org>
Date: Thu Oct 27 20:07:05 2016 +0200
gnu: Add r-mutationalpatterns.
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): New va
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from 327be74 gnu: jasper: Updat eto 1.900.16.
new 7500e42 gnu: Add r-mutationalpatterns.
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from e359b31 gnu: python-wsgiproxy2: Disable the test suite.
new ed8bc02 gnu: Add emacs-org-trello.
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commit ed8bc028f797604a9418d2c3d2edec19033064ce
Author: Roel Janssen <r...@gnu.org>
Date: Fri Oct 28 19:50:32 2016 +0200
gnu: Add emacs-org-trello.
* gnu/packages/emacs.scm (emacs-org-trello): New variable.
--
roelj pushed a commit to branch master
in repository guix.
commit 36e5d103875bb849d674be0cf01ee76ddfbe9a8d
Author: Roel Janssen <r...@gnu.org>
Date: Fri Oct 28 19:29:35 2016 +0200
gnu: Add emacs-request.
* gnu/packages/emacs.scm (emacs-request): New variable.
---
gnu/pa
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from fc381a3 gnu: Add qwt.
new 36e5d10 gnu: Add emacs-request.
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cal.mk (GNU_SYSTEM_MODULES): Add it.
Signed-off-by: Roel Janssen <r...@gnu.org>
---
gnu/local.mk |1 +
gnu/packages/uml.scm | 91 ++
2 files changed, 92 insertions(+)
diff --git a/gnu/local.mk b/gnu/local.mk
index aaa9f5c..3f
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from 64b8695 guix download: Add '--no-check-certificate' option.
new 842a140 gnu: Add plantuml.
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commit 2acaaee55007ddae404661e9f260ca720cbcda2d
Author: Roel Janssen <r...@gnu.org>
Date: Wed Oct 19 09:55:45 2016 +0200
gnu: Add r-getopt.
* gnu/packages/bioinformatics.scm (r-getopt): New variable.
---
gnu/pa
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from 2acaaee gnu: Add r-getopt.
new c79ad57 gnu: Add r-optparse.
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commit c79ad57a8def00a3fbefc7cac1f2306aaa1056bd
Author: Roel Janssen <r...@gnu.org>
Date: Wed Oct 19 10:48:56 2016 +0200
gnu: Add r-optparse.
* gnu/packages/bioinformatics.scm (r-optparse): New variable.
---
gnu/pa
roelj pushed a commit to branch master
in repository guix.
commit 207ce8fbe5a906789aafa4d337675c627ce592d8
Author: Roel Janssen <r...@gnu.org>
Date: Wed Oct 19 15:09:55 2016 +0200
gnu: Add r-biocviews.
* gnu/packages/bioinformatics.scm (r-biocviews): New variable.
--
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in repository guix.
from b747718 gnu: Add iperf.
new 207ce8f gnu: Add r-biocviews.
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commit 99df12cd1921dd497bb4fcdd96ee40e358d71e6d
Author: Roel Janssen <r...@gnu.org>
Date: Wed Oct 19 15:21:17 2016 +0200
gnu: Add r-biocstyle.
* gnu/packages/bioinformatics.scm (r-biocstyle): New variable.
--
roelj pushed a change to branch master
in repository guix.
from c645cef gnu: openssh: Fix CVE-2016-8858.
new 4644644 gnu: Add r-bioccheck.
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commit 4644644ace2ab64a07c075fe587c29abd3bb376a
Author: Roel Janssen <r...@gnu.org>
Date: Thu Oct 20 09:51:28 2016 +0200
gnu: Add r-bioccheck.
* gnu/packages/bioinformatics.scm (r-bioccheck): New variable.
--
roelj pushed a commit to branch master
in repository guix.
commit d6e5de1ed28c0aed2cd8f4246e053fd6cba6048b
Author: Roel Janssen <r...@gnu.org>
Date: Thu Oct 20 22:26:06 2016 +0200
gnu: Add emacs-d-mode.
* gnu/packages/emacs.scm (emacs-d-mode): New variable.
---
gnu/pa
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from 7f8393f gnu: python-mailmanclient: Fix typo.
new d6e5de1 gnu: Add emacs-d-mode.
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from 1f9803c services: static-networking: Add netmask.
new 88bdbb2 guix package: Display newline after generation diffs.
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commit 88bdbb2a0fd04e1fe5d390caf40697344d5de5b7
Author: Roel Janssen <r...@gnu.org>
Date: Thu Nov 17 23:49:29 2016 +0100
guix package: Display newline after generation diffs.
* guix/ui.scm (display-profile-conten
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from 6178274 gnu: python-urllib3: Update to 1.18.1.
new b5ce25c gnu: r: Use uname from Guix
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commit b5ce25cc0ecd1d8393f89ddca91be7000c0cc2cd
Author: Roel Janssen <r...@gnu.org>
Date: Thu Oct 27 16:36:09 2016 +0200
gnu: r: Use uname from Guix
* gnu/packages/statistics.scm (r): Use uname from Guix.
---
gnu/pa
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from 4a83865 gnu: Add r-synchronicity.
new 59523c4 gnu: Add r-bigmemory.
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commit 8af47ef603aeea6efbcfe9ab2c4adefefad2f6fb
Author: Roel Janssen <r...@gnu.org>
Date: Fri Nov 4 14:53:24 2016 +0100
gnu: r-nmf: Use bigmemory.
* gnu/packages/statistics.scm (r-nmf)[propagated-inputs]: Add
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from 59523c4 gnu: Add r-bigmemory.
new 8af47ef gnu: r-nmf: Use bigmemory.
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commit c6105d69c0a78c3b0880679370e70f17427a43e0
Author: Roel Janssen <r...@gnu.org>
Date: Fri Nov 4 14:35:04 2016 +0100
gnu: Add r-bigmemory-sri.
gnu/packages/statistics.scm (r-bigmemory-sri): New variable.
--
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from c6105d6 gnu: Add r-bigmemory-sri.
new 4a83865 gnu: Add r-synchronicity.
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commit 4a838652862cc849b799cb7f7c3d302d5337483f
Author: Roel Janssen <r...@gnu.org>
Date: Fri Nov 4 14:40:13 2016 +0100
gnu: Add r-synchronicity.
* gnu/packages/statistics.scm (r-synchronicity): New variable.
--
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from 1a79d47 gnu: xmp: Update to 4.1.0.
new c6105d6 gnu: Add r-bigmemory-sri.
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commit e95ae7c22373d2ba0e90ade2a46973ae9473d394
Author: Roel Janssen <r...@gnu.org>
Date: Wed Oct 26 14:53:29 2016 +0200
guix package: Display generation diffs.
* guix/ui.scm (display-profile-content-diff): New va
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from b2a2232 gnu: python-certifi: Update to 2016.8.31.
new e95ae7c guix package: Display generation diffs.
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commit c5173d74d67b786c36dd53930c5d4fe4805cf3e9
Author: Roel Janssen <r...@gnu.org>
Date: Thu Jan 12 10:02:57 2017 +0100
gnu: Add r-txdb-mmusculus-ucsc-mm10-knowngene.
* gnu/packages/bioinformatics.scm (r-txdb-mmu
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from eefd042 gnu: bind: Update to 9.10.4-P5 [fixes
CVE-2016-{9131,9147,9444}].
new c5173d7 gnu: Add r-txdb-mmusculus-ucsc-mm10-knowngene.
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from 409c573 build: Remove reference to 'doc/emacs.texi'.
new ac1f1e4 gnu: Add r-ggthemes.
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commit ac370a3397d6159097e70f1ebdf1d427d60a9180
Author: Roel Janssen <r...@gnu.org>
Date: Tue Jan 3 12:47:36 2017 +0100
gnu: r-genomeinfodb: Update to 1.10.2.
* gnu/packages/bioinformatics.scm (r-genomeinfodb):
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from 4fb14fa gnu: sudo: Update to 1.8.19p1.
new ac370a3 gnu: r-genomeinfodb: Update to 1.10.2.
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commit 437d064dc54353c1c52853734fd9043b9b190c28
Author: Roel Janssen <r...@gnu.org>
Date: Tue Jan 3 13:39:51 2017 +0100
gnu: r-openssl: Update to 0.9.6.
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.6.
--
roelj pushed a change to branch master
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from da13738 gnu: r-ggplot2: Update to 2.2.1.
new 596fcfa gnu: r-jsonlite: Update to 1.2.
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commit 596fcfac889ab84d97df408bdcbd18a731d1b8cf
Author: Roel Janssen <r...@gnu.org>
Date: Tue Jan 3 13:37:55 2017 +0100
gnu: r-jsonlite: Update to 1.2.
* gnu/packages/web.scm (r-jsonlite): Update to 1.2.
---
gnu/pa
roelj pushed a commit to branch master
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commit 0c74399d9812d956c9637404b0c10ca117cdca44
Author: Roel Janssen <r...@gnu.org>
Date: Tue Jan 3 13:49:18 2017 +0100
gnu: r-git2r: Update to 0.18.0.
* gnu/packages/statistics.scm (r-git2r): Update to 0.18.0.
--
roelj pushed a change to branch master
in repository guix.
from 807db78 gnu: r-hmisc: Update to 4.0-2.
new 0c74399 gnu: r-git2r: Update to 0.18.0.
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commit da13738ef06d96b3bb1f30eb3cba193eb38fb494
Author: Roel Janssen <r...@gnu.org>
Date: Tue Jan 3 13:34:53 2017 +0100
gnu: r-ggplot2: Update to 2.2.1.
* gnu/packages/statistics.scm (r-ggplot2): Update to 2.2.1.
--
roelj pushed a change to branch master
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from 407a280 gnu: r-genomicranges: Update to 1.26.2.
new da13738 gnu: r-ggplot2: Update to 2.2.1.
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commit 807db78fc9eb84d8eb2baf2f702248192c21e8be
Author: Roel Janssen <r...@gnu.org>
Date: Tue Jan 3 13:46:14 2017 +0100
gnu: r-hmisc: Update to 4.0-2.
* gnu/packages/statistics.scm (r-hmisc): Update to
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from 437d064 gnu: r-openssl: Update to 0.9.6.
new 807db78 gnu: r-hmisc: Update to 4.0-2.
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commit 407a2801034c88f38afd2293ee8eb5cdbbebb981
Author: Roel Janssen <r...@gnu.org>
Date: Tue Jan 3 13:28:35 2017 +0100
gnu: r-genomicranges: Update to 1.26.2.
* gnu/packages/bioinformatics.scm (r-genomicranges):
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from ac370a3 gnu: r-genomeinfodb: Update to 1.10.2.
new 407a280 gnu: r-genomicranges: Update to 1.26.2.
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from 596fcfa gnu: r-jsonlite: Update to 1.2.
new 437d064 gnu: r-openssl: Update to 0.9.6.
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from 0c74399 gnu: r-git2r: Update to 0.18.0.
new 7b030c9 gnu: r-plotrix: Update to 3.6-4.
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commit 7b030c9f9baf9048a9bf2daa2278c6ef4ceca6f6
Author: Roel Janssen <r...@gnu.org>
Date: Tue Jan 3 13:51:05 2017 +0100
gnu: r-plotrix: Update to 3.6-4.
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-4.
--
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from b2f1f7b gnu: emacs-guix: Update to 0.2.1.
new fb222fb gnu: Add perl-cddb-get.
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commit fb222fb2b05cedab4d2ca825933d49517ea65b93
Author: Roel Janssen <r...@gnu.org>
Date: Mon Dec 26 12:45:48 2016 +0100
gnu: Add perl-cddb-get.
* gnu/packages/perl.scm (perl-cddb-get): New variable.
---
gnu/pa
roelj pushed a commit to branch master
in repository guix.
commit 328398e7523381aa35ef5e5792c4228b075e15b1
Author: Roel Janssen <r...@gnu.org>
Date: Mon Dec 26 12:58:29 2016 +0100
gnu: Add ripit.
* gnu/packages/cdrom.scm (ripit): New variable.
---
gnu/packages/cdrom.scm
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from fb222fb gnu: Add perl-cddb-get.
new 328398e gnu: Add ripit.
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commit 193420a80319ed72db511b2d3d3cec62fc941d17
Author: Roel Janssen <r...@gnu.org>
Date: Tue Mar 21 12:14:05 2017 +0100
ftp-client: Allow custom username and password for FTP servers.
* guix/ftp-client.scm (ftp-open
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from 3b4efb1 gnu: dtc: Update to 1.4.4.
new 193420a ftp-client: Allow custom username and password for FTP
servers.
new a4f5423 download: Handle username and password properties for FTP
URIs.
The 2
roelj pushed a commit to branch master
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commit a4f542341511f33ece18d16b68118214da8143ec
Author: Roel Janssen <r...@gnu.org>
Date: Tue Mar 21 12:15:14 2017 +0100
download: Handle username and password properties for FTP URIs.
* guix/build/download.scm (ftp
roelj pushed a change to branch master
in repository guix.
from 0da4f36 gnu: Add rsnapshot.
new 64fc9f6 gexp: Expose functions to allow creating derivation
builders.
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roelj pushed a commit to branch master
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commit 64fc9f65f10b7ec584e6246914be322207162c0e
Author: Roel Janssen <r...@gnu.org>
Date: Thu Mar 9 12:37:21 2017 +0100
gexp: Expose functions to allow creating derivation builders.
* guix/gexp.scm: Add loa
roelj pushed a change to branch master
in repository guix.
from 7447aa3 utils: Make sure to use the right 'bytevector->string'.
new c49840f gnu: Add lensfun.
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commit c49840f8d44859fd5ee537d329209d8fac5dcd7d
Author: Roel Janssen <r...@gnu.org>
Date: Wed Mar 8 23:49:24 2017 +0100
gnu: Add lensfun.
* gnu/packages/photo.scm (lensfun): New variable.
---
gnu/packages/photo.sc
roelj pushed a commit to branch gnome-updates
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commit 36de968554a8b8a997c2c5de190566a54d611af1
Author: Roel Janssen <r...@gnu.org>
Date: Mon Apr 17 23:57:36 2017 +0200
gnu: glib: Update to 2.52.1.
* gnu/packages/glib.scm (glib): Update to 2.52.1.
--
roelj pushed a change to branch gnome-updates
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at 36de968 gnu: glib: Update to 2.52.1.
This branch includes the following new commits:
new 36de968 gnu: glib: Update to 2.52.1.
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from 5d7e854 graph: Provide access to the package record in the emit
functions.
new cdf124c gnu: r-foreign: Remove duplicate recipe.
new 14fce39 gnu: r-foreign: Update hash after upstream tarball change.
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from f1915a5 gnu: r-deseq2: Update to 1.16.1.
new 2f06dc0 gnu: Add r-rlang.
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roelj pushed a commit to branch master
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commit 2f06dc04356f8e6f8d210f7bbcc73a75666bc3a8
Author: Roel Janssen <r...@gnu.org>
Date: Wed Aug 2 00:57:39 2017 +0200
gnu: Add r-rlang.
* gnu/packages/statistics.scm (r-rlang): New variable.
---
gnu/pa
roelj pushed a change to branch master
in repository guix.
from a606672 guix package: Allow `guix package -u' to fuction as
before.
new 5d7e854 graph: Provide access to the package record in the emit
functions.
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roelj pushed a commit to branch master
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commit 1ff74d074ee06c1858daa7455a2103e542f14364
Author: Roel Janssen <r...@gnu.org>
Date: Wed Aug 2 00:27:57 2017 +0200
gnu: r-biocparallel: Update to 1.10.1.
* gnu/packages/bioinformatics.scm (r-biocparallel):
roelj pushed a commit to branch master
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commit 9c4348d8c4532c63879ac3ea076ac255124328fb
Author: Roel Janssen <r...@gnu.org>
Date: Wed Aug 2 00:32:11 2017 +0200
gnu: r-dnacopy: Update to 1.50.1.
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to
roelj pushed a commit to branch master
in repository guix.
commit 48f5d283b2c38e8ea3958fc141df5a630e2f267c
Author: Roel Janssen <r...@gnu.org>
Date: Wed Aug 2 00:31:08 2017 +0200
gnu: r-variantannotation: Update to 1.22.3.
* gnu/packages/bioinformatics.scm (r-variantanno
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