subject:"01\/01\: Merge branch 'master' into core\-updates"

01/01: Merge branch 'master' into core-updates

2022-06-08 Thread guix-commits

civodul pushed a commit to branch core-updates
in repository guix.

commit 8c3e9da13a3c92a7db308db8c0d81cb474ad7799
Merge: 5439c04ebd 0c5299200f
Author: Ludovic Courtès 
AuthorDate: Wed Jun 8 14:46:24 2022 +0200

Merge branch 'master' into core-updates

 .dir-locals.el | 4 +-
 .gitignore | 1 +
 Makefile.am|48 +-
 build-aux/cuirass/evaluate.scm |53 +-
 doc/build.scm  |26 +-
 doc/contributing.texi  |   104 +
 doc/guix-cookbook.texi |13 +-
 doc/guix.texi  |  1056 +-
 doc/htmlxref.cnf   | 9 +-
 doc/local.mk   |18 +-
 etc/committer.scm.in   |   197 +-
 etc/completion/bash/guix   |61 +-
 etc/news.scm   |   163 +-
 etc/release-manifest.scm   | 4 +-
 .../text-mode/guix-commit-message-remove-package   |13 +
 etc/system-tests.scm   |39 +-
 gnu/bootloader/grub.scm|34 +
 gnu/build/file-systems.scm |   118 +-
 gnu/build/image.scm|31 +-
 gnu/build/linux-container.scm  |78 +-
 gnu/build/marionette.scm   |45 +-
 gnu/build/secret-service.scm   |90 +-
 gnu/build/shepherd.scm |92 +-
 gnu/ci.scm |15 +-
 gnu/home/services.scm  |45 +-
 gnu/home/services/shells.scm   |36 +-
 gnu/home/services/shepherd.scm |44 +-
 gnu/home/services/symlink-manager.scm  |36 +-
 gnu/home/services/xdg.scm  | 5 +-
 gnu/image.scm  | 2 +-
 gnu/installer/newt/user.scm|49 +-
 gnu/local.mk   |   110 +-
 gnu/packages.scm   |53 +-
 gnu/packages/ada.scm   |29 -
 gnu/packages/admin.scm |   337 +-
 gnu/packages/agda.scm  |39 +-
 gnu/packages/algebra.scm   |12 +-
 gnu/packages/android.scm   |22 +-
 gnu/packages/antivirus.scm |   132 +-
 gnu/packages/apl.scm   |75 +-
 gnu/packages/aspell.scm| 7 +-
 gnu/packages/assembly.scm  |25 +-
 gnu/packages/astronomy.scm |53 +-
 gnu/packages/audio.scm |   435 +-
 gnu/packages/autogen.scm   | 4 +
 gnu/packages/autotools.scm |14 +-
 gnu/packages/aux-files/linux-libre/4.4-i686.conf   |  8632 ---
 gnu/packages/aux-files/linux-libre/4.4-x86_64.conf |  8441 ---
 .../linux-libre/{5.16-arm.conf => 5.17-arm.conf}   |   164 +-
 .../{5.16-arm64.conf => 5.17-arm64.conf}   |   220 +-
 .../linux-libre/{5.16-i686.conf => 5.17-i686.conf} |   184 +-
 .../{5.16-x86_64.conf => 5.17-x86_64.conf} |   203 +-
 gnu/packages/avr-xyz.scm   |97 +
 gnu/packages/backup.scm|   122 +-
 gnu/packages/base.scm  |67 +-
 gnu/packages/benchmark.scm |91 +-
 gnu/packages/bioconductor.scm  |  3042 +-
 gnu/packages/bioinformatics.scm|  1899 +-
 gnu/packages/bittorrent.scm|53 +-
 gnu/packages/boost.scm | 7 -
 gnu/packages/bootloaders.scm   |59 +-
 gnu/packages/bootstrap.scm |51 +-
 gnu/packages/browser-extensions.scm| 4 +-
 gnu/packages/build-tools.scm   | 4 +-
 gnu/packages/busybox.scm   |37 +-
 gnu/packages/c.scm |   191 +-
 gnu/packages/ccache.scm| 6 +-
 gnu/packages/certs.scm | 9 +-
 gnu/packages/check.scm |   512 +-
 gnu/packages/chemistry.scm |92 -
 gnu/packages/chez.scm  |   430 +-
 gnu/packages/chromium.scm  |   145 +-
 gnu/packages/ci.scm|17 +-
 gnu/packages/cmake.scm |12 +-
 gnu/packages/code.scm  |   124 +-
 gnu/packages/commencem

01/01: Merge branch 'master' into core-updates-frozen

2021-11-23 Thread guix-commits

civodul pushed a commit to branch core-updates-frozen
in repository guix.

commit b15e543d303ea58fdc0f0541c708389f9d513e3d
Merge: 4efc08d daf7b5e
Author: Ludovic Courtès 
AuthorDate: Tue Nov 23 11:22:30 2021 +0100

Merge branch 'master' into core-updates-frozen

 NEWS   |  11 +
 configure.ac   |   2 +-
 doc/contributing.texi  |  12 +-
 doc/guix.texi  | 223 +---
 gnu/bootloader.scm |  16 +-
 gnu/build/file-systems.scm |  36 +-
 gnu/home/services.scm  |   2 +-
 gnu/local.mk   |   5 +-
 gnu/packages/algebra.scm   |  12 +-
 gnu/packages/bioconductor.scm  |  83 +--
 gnu/packages/bioinformatics.scm|   6 +-
 gnu/packages/bittorrent.scm|  44 +-
 gnu/packages/calendar.scm  |  30 +
 gnu/packages/chromium.scm  |   8 +-
 gnu/packages/compression.scm   |  12 +
 gnu/packages/coq.scm   | 235 
 gnu/packages/crates-io.scm |  27 +-
 gnu/packages/cups.scm  |   4 +-
 gnu/packages/databases.scm |  63 ++-
 gnu/packages/education.scm |   4 +-
 gnu/packages/emacs-xyz.scm | 223 +---
 gnu/packages/embedded.scm  |  33 ++
 gnu/packages/emulators.scm |   4 +-
 gnu/packages/fonts.scm |   8 +-
 gnu/packages/game-development.scm  |  54 ++
 gnu/packages/games.scm |  12 +-
 gnu/packages/geo.scm   |  43 +-
 gnu/packages/gnome-xyz.scm |  34 ++
 gnu/packages/gnome.scm |  11 +-
 gnu/packages/gnuzilla.scm  |  39 ++
 gnu/packages/haskell-apps.scm  |   4 +-
 gnu/packages/ibus.scm  |  31 ++
 gnu/packages/linux.scm |  81 ++-
 gnu/packages/lisp-xyz.scm  | 562 ++-
 gnu/packages/messaging.scm |  42 ++
 gnu/packages/networking.scm|   4 +-
 gnu/packages/ocaml.scm | 615 +
 gnu/packages/openldap.scm  |   9 +-
 gnu/packages/package-management.scm|   6 +-
 .../ocaml-ppx-variants-ppxlib-api-change.patch |  42 --
 .../patches/ocaml-qcheck-fix-test-whitespace.patch |  24 +
 .../patches/rust-shell2batch-lint-fix.patch|  25 +
 gnu/packages/perl-check.scm|   4 +-
 gnu/packages/perl.scm  |  21 +-
 gnu/packages/python-xyz.scm| 106 +++-
 gnu/packages/scsi.scm  |   7 +-
 gnu/packages/shells.scm|   4 +-
 gnu/packages/spreadsheet.scm   | 121 
 gnu/packages/statistics.scm| 202 ++-
 gnu/packages/version-control.scm   |  30 +
 gnu/packages/video.scm |  42 +-
 gnu/packages/visidata.scm  |  64 ---
 gnu/packages/web-browsers.scm  |  12 +-
 gnu/packages/web.scm   |   4 +-
 gnu/packages/wm.scm|  90 +++
 gnu/packages/xdisorg.scm   |   4 +-
 gnu/packages/xfce.scm  |  12 +-
 gnu/packages/xfig.scm  |   9 +-
 gnu/services/base.scm  | 105 ++--
 gnu/services/docker.scm|   6 +
 gnu/system.scm |  51 +-
 gnu/system/examples/desktop.tmpl   |   7 +-
 gnu/system/file-systems.scm|  24 +-
 guix/build-system/asdf.scm |   3 +-
 guix/build/syscalls.scm|  12 +
 guix/diagnostics.scm   |  38 +-
 guix/docker.scm|   9 +-
 guix/gnupg.scm |  31 +-
 guix/import/opam.scm   |   5 +-
 guix/import/texlive.scm| 264 +
 guix/scripts/graph.scm |   2 +-
 guix/scripts/home.scm  |  10 +-
 guix/scripts/import/texlive.scm|  16 +-
 guix/svn-download.scm  |  31 +-
 nix/libutil/util.cc|   9 +-
 tests/texlive.scm  | 221 +---
 76 files changed, 32

01/01: Merge branch 'master' into core-updates-frozen

2021-10-13 Thread guix-commits

mbakke pushed a commit to branch core-updates-frozen
in repository guix.

commit 0f77e50139b023cb1a5a82ac3a0b9b7fa990c45b
Merge: 641b31d 1961b28
Author: Marius Bakke 
AuthorDate: Thu Oct 14 00:01:12 2021 +0200

Merge branch 'master' into core-updates-frozen

 gnu/local.mk   |   5 +-
 gnu/packages/admin.scm |  28 +++
 gnu/packages/c.scm |   5 +-
 gnu/packages/code.scm  |  30 +++
 gnu/packages/compression.scm   |  25 +--
 gnu/packages/databases.scm |   2 +-
 gnu/packages/django.scm|   2 +-
 gnu/packages/dns.scm   |  53 +
 gnu/packages/file-systems.scm  |   2 +-
 gnu/packages/finance.scm   |  41 ++--
 gnu/packages/fonts.scm |   2 +-
 gnu/packages/fontutils.scm |   2 +-
 gnu/packages/games.scm |   5 +-
 gnu/packages/gnome.scm |  33 +--
 gnu/packages/gnucash.scm   |   6 +-
 gnu/packages/golang.scm|  35 
 gnu/packages/haskell-apps.scm  |   4 +-
 gnu/packages/image.scm |   9 +-
 gnu/packages/linux.scm | 110 ++
 gnu/packages/lisp-xyz.scm  | 231 +
 gnu/packages/mail.scm  |  19 +-
 gnu/packages/networking.scm|   2 +-
 gnu/packages/node.scm  |   8 +-
 gnu/packages/openstack.scm |   6 +-
 gnu/packages/package-management.scm|   6 +-
 .../patches/cpufrequtils-fix-aclocal.patch |  46 
 gnu/packages/patches/ganeti-sphinx-compat.patch|  24 +++
 .../patches/libhx-fix-double-free-bug.patch|  80 +++
 gnu/packages/patches/qemu-meson-compat.patch   |  27 ---
 gnu/packages/patches/qemu-sphinx-compat.patch  |  18 --
 gnu/packages/python-compression.scm|  20 --
 gnu/packages/python-web.scm|   1 -
 gnu/packages/python-xyz.scm|  12 +-
 gnu/packages/serialization.scm |  50 +
 gnu/packages/shellutils.scm|  53 +
 gnu/packages/suckless.scm  |  31 +++
 gnu/packages/tcl.scm   |   4 +-
 gnu/packages/vim.scm   |  29 +++
 gnu/packages/virtualization.scm|  37 ++--
 gnu/packages/web.scm   |   4 +-
 gnu/system/linux-initrd.scm|   3 +
 guix/self.scm  |  22 +-
 42 files changed, 864 insertions(+), 268 deletions(-)

diff --cc gnu/local.mk
index a2201a5,8c30eaa..c1f2399
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@@ -958,9 -953,7 +958,8 @@@ dist_patch_DATA =  

%D%/packages/patches/collectd-5.11.0-noinstallvar.patch \
%D%/packages/patches/combinatorial-blas-awpm.patch  \
%D%/packages/patches/combinatorial-blas-io-fix.patch\
 +  %D%/packages/patches/coreutils-gnulib-tests.patch   \
%D%/packages/patches/coreutils-ls.patch \
-   %D%/packages/patches/cpufrequtils-fix-aclocal.patch \
%D%/packages/patches/cpuinfo-system-libraries.patch \
%D%/packages/patches/crawl-upgrade-saves.patch  \
%D%/packages/patches/crda-optional-gcrypt.patch \
@@@ -1071,8 -1065,10 +1070,9 @@@
%D%/packages/patches/ganeti-disable-version-symlinks.patch  \
%D%/packages/patches/ganeti-haskell-compat.patch\
%D%/packages/patches/ganeti-haskell-pythondir.patch \
 -  %D%/packages/patches/ganeti-preserve-PYTHONPATH.patch   \
%D%/packages/patches/ganeti-shepherd-master-failover.patch  \
%D%/packages/patches/ganeti-shepherd-support.patch  \
+   %D%/packages/patches/ganeti-sphinx-compat.patch \
%D%/packages/patches/gash-utils-ls-test.patch   \
%D%/packages/patches/gawk-shell.patch   \
%D%/packages/patches/gcc-arm-bug-71399.patch\
diff --cc gnu/packages/virtualization.scm
index 5ab95e5,0dd05a6..77b2997
--- a/gnu/packages/virtualization.scm
+++ b/gnu/packages/virtualization.scm
@@@ -523,9 -519,11 +518,10 @@@ firmware blobs.  You ca
(file-name (git-file-name name version))
(patches (search-patches "ganeti-shepherd-support.patch"
 "ganeti-shepherd-master-failover.patch"
+"ganeti-sphinx-compat.patch"
 "ganeti-haskell-comp

01/01: Merge branch 'master' into core-updates-frozen

2021-07-29 Thread guix-commits

mbakke pushed a commit to branch core-updates-frozen
in repository guix.

commit b029be2ee0f81cdcbc14240ff426408085ab0a40
Merge: bc55f30 ffb3818
Author: Marius Bakke 
AuthorDate: Thu Jul 29 22:34:57 2021 +0200

Merge branch 'master' into core-updates-frozen

 Conflicts:
gnu/packages/bioinformatics.scm
gnu/packages/cmake.scm
gnu/packages/curl.scm
gnu/packages/emacs-xyz.scm
gnu/packages/gpodder.scm
gnu/packages/music.scm
gnu/packages/patches/glibc-bootstrap-system.patch
gnu/packages/python-xyz.scm
gnu/packages/shells.scm
gnu/packages/statistics.scm

 Makefile.am| 4 -
 doc/guix.texi  |45 +-
 gnu/build/activation.scm   |38 +-
 gnu/local.mk   | 5 +
 gnu/packages/admin.scm |36 +-
 gnu/packages/algebra.scm   |20 +-
 gnu/packages/audio.scm | 8 +-
 gnu/packages/aux-files/linux-libre/5.12-arm.conf   |  9984 -
 gnu/packages/aux-files/linux-libre/5.12-arm64.conf | 10249 -
 gnu/packages/aux-files/linux-libre/5.12-i686.conf  | 10829 --
 .../aux-files/linux-libre/5.12-x86_64.conf | 10877 ---
 gnu/packages/bioconductor.scm  |46 +-
 gnu/packages/bioinformatics.scm|   359 +-
 gnu/packages/cmake.scm |10 +
 gnu/packages/code.scm  |10 +-
 gnu/packages/cran.scm  |   441 +-
 gnu/packages/crates-io.scm |   749 +-
 gnu/packages/curl.scm  |13 +
 gnu/packages/databases.scm |91 +-
 gnu/packages/ebook.scm | 4 +-
 gnu/packages/education.scm | 7 +-
 gnu/packages/emacs-xyz.scm |   365 +-
 gnu/packages/emulators.scm |58 +-
 gnu/packages/enlightenment.scm |11 +-
 gnu/packages/freedesktop.scm   |45 +-
 gnu/packages/geo.scm   |55 +-
 gnu/packages/gl.scm|25 +-
 gnu/packages/gnome.scm |70 +-
 gnu/packages/gnuzilla.scm  | 8 +-
 gnu/packages/gpodder.scm   |11 +-
 gnu/packages/graph.scm |24 +-
 gnu/packages/graphviz.scm  | 2 +-
 gnu/packages/guile.scm | 4 +-
 gnu/packages/haskell-apps.scm  | 4 +-
 gnu/packages/haskell.scm   |12 +-
 gnu/packages/java.scm  |18 +-
 gnu/packages/julia-jll.scm | 3 +
 gnu/packages/julia-xyz.scm |   302 +-
 gnu/packages/julia.scm |   431 +-
 gnu/packages/jupyter.scm   |88 +
 gnu/packages/linux.scm |   156 +-
 gnu/packages/lisp-xyz.scm  |   132 +-
 gnu/packages/lisp.scm  |   118 +-
 gnu/packages/machine-learning.scm  |51 +
 gnu/packages/mail.scm  |19 +-
 gnu/packages/maths.scm |   280 +-
 gnu/packages/messaging.scm |40 +
 gnu/packages/music.scm |   213 +-
 gnu/packages/networking.scm|11 +-
 gnu/packages/node-xyz.scm  |27 +
 gnu/packages/package-management.scm|   121 +-
 gnu/packages/patches/esmtp-add-lesmtp.patch|37 +
 .../extempore-unbundle-external-dependencies.patch |   316 +-
 gnu/packages/patches/glibc-bootstrap-system.patch  |28 +-
 gnu/packages/patches/julia-tracker-16-compat.patch |40 +
 .../patches/marble-qt-add-qt-headers.patch |   189 +
 gnu/packages/pcre.scm  |15 +
 gnu/packages/pdf.scm   |19 +-
 gnu/packages/php.scm   |16 +-
 gnu/packages/plan9.scm |66 +
 gnu/packages/python-science.scm|   210 +-
 gnu/packages/python-web.scm|25 +
 gnu/packages/python-xyz.scm|   218 +-
 gnu/packages/rdesktop.scm  | 7 +-
 gnu/packages/rdf.scm   |27 +
 gnu/packages/ruby.scm  |27 +-
 gnu/packages/rust-apps.scm | 7 +-
 gnu/packages/search.scm|53 +-
 gnu/packages/shells.s

01/01: Merge branch 'master' into core-updates

2021-06-19 Thread guix-commits

mbakke pushed a commit to branch core-updates
in repository guix.

commit 6f9a80b331ae41d142a49fbeb94b90ee587b6155
Merge: 6500c9a dece03e
Author: Marius Bakke 
AuthorDate: Sat Jun 19 17:38:47 2021 +0200

Merge branch 'master' into core-updates

Note: this merge actually changes the 'curl' and 'python-attrs' derivations,
as part of solving caf4a7a2770ef4d05a6e18f40d602e51da749ddc and
12964df69a99de6190422c752fef65ef813f3b6b respectively.

4604d43c0e (gnu: gnutls@3.6.16: Fix cross-compilation.) was ignored because 
it
cannot currently be tested.

 Conflicts:
gnu/local.mk
gnu/packages/aidc.scm
gnu/packages/boost.scm
gnu/packages/curl.scm
gnu/packages/nettle.scm
gnu/packages/networking.scm
gnu/packages/python-xyz.scm
gnu/packages/tls.scm

 Makefile.am|3 +-
 bootstrap  |6 +-
 build-aux/compile-all.scm  |9 +-
 config-daemon.ac   |2 +-
 doc/contributing.texi  |  151 +-
 doc/guix.texi  |  164 +-
 etc/completion/bash/guix   |  117 +-
 etc/indent-code.el |3 +
 etc/news.scm   |2 +-
 etc/substitutes/bordeaux.guix.gnu.org.pub  |6 +
 gnu/build/linux-boot.scm   |   10 +
 gnu/installer/newt/partition.scm   |8 +
 gnu/installer/parted.scm   |   98 +-
 gnu/local.mk   |   26 +-
 gnu/packages/admin.scm |   17 +-
 gnu/packages/aidc.scm  |2 +-
 gnu/packages/algebra.scm   |4 +-
 gnu/packages/animation.scm |4 +-
 gnu/packages/astronomy.scm |4 +-
 gnu/packages/audio.scm |   71 +-
 gnu/packages/bioconductor.scm  |   69 +-
 gnu/packages/bioinformatics.scm|  457 ++-
 gnu/packages/bittorrent.scm|2 +-
 gnu/packages/boost.scm |   88 +-
 gnu/packages/bootloaders.scm   |   43 +-
 gnu/packages/calendar.scm  |2 +-
 gnu/packages/chemistry.scm |6 +-
 gnu/packages/chromium.scm  |8 +-
 gnu/packages/ci.scm|8 +-
 gnu/packages/compression.scm   |   99 +-
 gnu/packages/connman.scm   |7 +-
 gnu/packages/coq.scm   |  140 +-
 gnu/packages/cpp.scm   |2 +-
 gnu/packages/cran.scm  |   28 +
 gnu/packages/crates-io.scm | 4340 ++--
 gnu/packages/cryptsetup.scm|2 +-
 gnu/packages/cups.scm  |   10 +-
 gnu/packages/curl.scm  |5 +-
 gnu/packages/cvassistant.scm   |2 +-
 gnu/packages/cybersecurity.scm |   51 +-
 gnu/packages/databases.scm |   38 +
 gnu/packages/datastructures.scm|4 +-
 gnu/packages/dictionaries.scm  |6 -
 gnu/packages/disk.scm  |4 +-
 gnu/packages/display-managers.scm  |2 +-
 gnu/packages/djvu.scm  |2 +-
 gnu/packages/dns.scm   |   15 +-
 gnu/packages/docker.scm|   21 +-
 gnu/packages/documentation.scm |2 +-
 gnu/packages/ebook.scm |9 +-
 gnu/packages/education.scm |   12 +-
 gnu/packages/electronics.scm   |2 +-
 gnu/packages/emacs-xyz.scm |  268 +-
 gnu/packages/emulators.scm |   12 +-
 gnu/packages/engineering.scm   |   72 +-
 gnu/packages/fcitx.scm |2 +-
 gnu/packages/fcitx5.scm|   42 +-
 gnu/packages/file-systems.scm  |   11 +-
 gnu/packages/finance.scm   |   18 +-
 gnu/packages/firmware.scm  |3 +-
 gnu/packages/flashing-tools.scm|4 +-
 gnu/packages/fonts.scm |  120 +-
 gnu/packages/fpga.scm  |2 +-
 gnu/packages/freedesktop.scm   |   28 +-
 gnu/packages/game-development.scm  |   20 +-
 gnu/packages/games.scm |   98 +-
 gnu/packages/gcc.scm

01/01: Merge branch 'master' into core-updates

2021-06-06 Thread guix-commits

mbakke pushed a commit to branch core-updates
in repository guix.

commit 8d59c262ada2e2167196a8fb8cbebd9c329a79dd
Merge: e7f0835 a068ed6
Author: Marius Bakke 
AuthorDate: Sun Jun 6 21:16:32 2021 +0200

Merge branch 'master' into core-updates

 Conflicts:
gnu/local.mk
gnu/packages/algebra.scm
gnu/packages/bioinformatics.scm
gnu/packages/curl.scm
gnu/packages/docbook.scm
gnu/packages/emacs-xyz.scm
gnu/packages/maths.scm
gnu/packages/plotutils.scm
gnu/packages/python-web.scm
gnu/packages/python-xyz.scm
gnu/packages/radio.scm
gnu/packages/readline.scm
gnu/packages/tls.scm
gnu/packages/xml.scm
gnu/packages/xorg.scm

 Makefile.am|3 +
 configure.ac   |6 +-
 doc/contributing.texi  |   36 +-
 doc/guix.texi  |   58 +-
 etc/guix-daemon.cil.in |7 +-
 etc/news.scm   |   35 +
 gnu/bootloader/u-boot.scm  |7 +-
 gnu/build/linux-boot.scm   |   16 +-
 gnu/local.mk   |   13 +-
 gnu/machine/ssh.scm|   41 +-
 gnu/packages/admin.scm |   42 +-
 gnu/packages/algebra.scm   |4 +-
 gnu/packages/animation.scm |   78 +-
 gnu/packages/aspell.scm|4 +-
 gnu/packages/astronomy.scm |4 +-
 gnu/packages/audio.scm |   32 +-
 gnu/packages/axoloti.scm   |5 +
 gnu/packages/benchmark.scm |   19 +-
 gnu/packages/bioconductor.scm  | 4065 +++-
 gnu/packages/bioinformatics.scm| 3028 +--
 gnu/packages/check.scm |9 +-
 gnu/packages/chromium.scm  |   31 +-
 gnu/packages/ci.scm|8 +-
 gnu/packages/cluster.scm   |   45 +-
 gnu/packages/compression.scm   |   14 +-
 gnu/packages/cran.scm  |  904 -
 gnu/packages/crates-graphics.scm   |  119 +-
 gnu/packages/crates-io.scm | 1664 +++-
 gnu/packages/crypto.scm|   12 +-
 gnu/packages/cryptsetup.scm|   26 +-
 gnu/packages/curl.scm  |   15 +
 gnu/packages/databases.scm |   20 +-
 gnu/packages/dictionaries.scm  |5 +-
 gnu/packages/diffoscope.scm|4 +-
 gnu/packages/disk.scm  |   50 +-
 gnu/packages/django.scm|   17 +-
 gnu/packages/dns.scm   |3 +
 gnu/packages/education.scm |   38 +
 gnu/packages/emacs-xyz.scm | 1660 
 gnu/packages/emacs.scm |   12 +-
 gnu/packages/emulators.scm |  404 +-
 gnu/packages/engineering.scm   |4 +-
 gnu/packages/entr.scm  |5 +-
 gnu/packages/file-systems.scm  |   37 +-
 gnu/packages/fltk.scm  |6 +-
 gnu/packages/fonts.scm |   28 +-
 gnu/packages/fpga.scm  |7 +-
 gnu/packages/freeipmi.scm  |6 +-
 gnu/packages/ftp.scm   |4 +-
 gnu/packages/game-development.scm  |4 +-
 gnu/packages/games.scm |   72 +-
 gnu/packages/gcc.scm   |4 +-
 gnu/packages/gnome.scm |   20 +-
 gnu/packages/gnucash.scm   |   12 +-
 gnu/packages/gnuzilla.scm  |   63 +-
 gnu/packages/guile-xyz.scm |   39 +-
 gnu/packages/guile.scm |4 +-
 gnu/packages/hardware.scm  |4 +-
 gnu/packages/i2p.scm   |   74 +-
 gnu/packages/icu4c.scm |   16 +
 gnu/packages/image-processing.scm  |5 +
 gnu/packages/image.scm |4 +-
 gnu/packages/installers.scm|3 +-
 gnu/packages/jami.scm  |   13 +-
 gnu/packages/julia-jll.scm | 2667 +
 gnu/packages/julia-xyz.scm | 1334 +--
 gnu/packages/kde.scm   |4 +-
 gnu/packages/libreoffice.scm

01/01: Merge branch 'master' into core-updates

2021-03-05 Thread guix-commits

cbaines pushed a commit to branch core-updates
in repository guix.

commit a8448da0f4a090818104e64dd79f90b0e50d5e77
Merge: 4f4b749 a714af3
Author: Christopher Baines 
AuthorDate: Fri Mar 5 22:56:40 2021 +

Merge branch 'master' into core-updates

 .guix-authorizations   | 2 +
 Makefile.am| 6 +
 doc/contributing.texi  |10 +-
 doc/guix.texi  |  1281 ++-
 etc/completion/fish/guix.fish  | 7 +-
 etc/completion/zsh/_guix   | 2 +-
 etc/news.scm   |80 +-
 gnu/build/file-systems.scm |45 +-
 gnu/image.scm  | 1 +
 gnu/local.mk   |26 +-
 gnu/machine/ssh.scm| 6 +-
 gnu/packages/admin.scm |   180 +-
 gnu/packages/algebra.scm   |28 +-
 gnu/packages/animation.scm | 6 +-
 gnu/packages/assembly.scm  |33 +-
 gnu/packages/astronomy.scm |   314 +-
 gnu/packages/audio.scm |   117 +-
 gnu/packages/authentication.scm| 4 +-
 gnu/packages/autotools.scm | 4 +-
 .../aux-files/chromium/master-preferences.json | 8 +-
 gnu/packages/aux-files/linux-libre/5.11-arm.conf   |  9944 +
 gnu/packages/aux-files/linux-libre/5.11-arm64.conf | 10140 +
 gnu/packages/aux-files/linux-libre/5.11-i686.conf  | 10792 ++
 .../aux-files/linux-libre/5.11-x86_64.conf | 10828 +++
 gnu/packages/batik.scm | 4 +-
 gnu/packages/benchmark.scm |28 +-
 gnu/packages/bioconductor.scm  |   347 +-
 gnu/packages/bioinformatics.scm|   354 +-
 gnu/packages/build-tools.scm   |50 +
 gnu/packages/calendar.scm  | 6 +-
 gnu/packages/cdrom.scm | 8 +-
 gnu/packages/check.scm | 2 +-
 gnu/packages/chromium.scm  | 8 +-
 gnu/packages/ci.scm|32 +-
 gnu/packages/cmake.scm |56 +-
 gnu/packages/compression.scm   |29 +-
 gnu/packages/compton.scm   | 2 +-
 gnu/packages/cpp.scm   |   114 +-
 gnu/packages/cran.scm  |   324 +-
 gnu/packages/crates-graphics.scm   |   344 +-
 gnu/packages/crates-gtk.scm|40 +-
 gnu/packages/crates-io.scm |  6813 ++--
 gnu/packages/crypto.scm|43 +-
 gnu/packages/cybersecurity.scm | 6 +-
 gnu/packages/databases.scm |62 +-
 gnu/packages/datastructures.scm|10 +-
 gnu/packages/dictionaries.scm  | 6 +-
 gnu/packages/diffoscope.scm| 5 +-
 gnu/packages/disk.scm  |19 +-
 gnu/packages/display-managers.scm  |31 +
 gnu/packages/distributed.scm   | 2 +-
 gnu/packages/dns.scm   |28 +-
 gnu/packages/documentation.scm | 2 +-
 gnu/packages/education.scm | 6 +-
 gnu/packages/electronics.scm   |52 +
 gnu/packages/emacs-xyz.scm |  1424 ++-
 gnu/packages/embedded.scm  |39 +-
 gnu/packages/emulators.scm |71 +-
 gnu/packages/engineering.scm   |   170 +-
 gnu/packages/file-systems.scm  |72 +-
 gnu/packages/fonts.scm |30 +-
 gnu/packages/fontutils.scm |26 +-
 gnu/packages/freedesktop.scm   |21 +-
 gnu/packages/freeipmi.scm  | 6 +-
 gnu/packages/game-development.scm  | 4 +-
 gnu/packages/games.scm |   164 +-
 gnu/packages/geo.scm   |14 +-
 gnu/packages/gimp.scm  | 2 +-
 gnu/packages/gl.scm| 4 +-
 gnu/packages/gnome.scm |91 +-
 gnu/packages/gnuzilla.scm  |14 +-
 gnu/packages/golang.scm|79 +
 gnu/packages/gps.scm   | 5 +-
 gnu/packages/graph.scm |31 +-
 gnu/packages/

01/01: Merge branch 'master' into core-updates

2021-02-11 Thread guix-commits

dannym pushed a commit to branch core-updates
in repository guix.

commit abd318ff4b741eac11227778bf2e569ee7b186ff
Merge: 71cb6df c5dc87f
Author: Danny Milosavljevic 
AuthorDate: Thu Feb 11 19:12:36 2021 +0100

Merge branch 'master' into core-updates

 Makefile.am| 6 +-
 build-aux/build-self.scm   |11 +-
 configure.ac   | 1 +
 doc/guix.texi  |13 +
 etc/guix-publish.service.in| 3 +
 etc/news.scm   |74 +
 gnu/bootloader/u-boot.scm  | 9 +-
 gnu/build/activation.scm   | 4 +-
 gnu/local.mk   | 9 +-
 gnu/packages/admin.scm |12 +-
 gnu/packages/antivirus.scm | 6 +-
 gnu/packages/astronomy.scm |34 +
 gnu/packages/aux-files/guile-launcher.c| 8 +-
 gnu/packages/aux-files/linux-libre/5.10-arm.conf   | 6 +-
 gnu/packages/aux-files/linux-libre/5.10-arm64.conf |14 +-
 gnu/packages/aux-files/linux-libre/5.10-i686.conf  |13 +-
 .../aux-files/linux-libre/5.10-x86_64.conf |35 +-
 gnu/packages/aux-files/linux-libre/5.9-arm.conf|  9791 -
 gnu/packages/aux-files/linux-libre/5.9-arm64.conf  |  9895 -
 gnu/packages/aux-files/linux-libre/5.9-i686.conf   | 10645 ---
 gnu/packages/aux-files/linux-libre/5.9-x86_64.conf | 10638 --
 gnu/packages/bioinformatics.scm| 2 +-
 gnu/packages/bootloaders.scm   |46 +-
 gnu/packages/browser-extensions.scm| 8 +-
 gnu/packages/cdrom.scm | 4 +
 gnu/packages/chromium.scm  | 9 +-
 gnu/packages/ci.scm| 6 +-
 gnu/packages/compression.scm   |11 +-
 gnu/packages/connman.scm   | 4 +-
 gnu/packages/cran.scm  |  1509 ++-
 gnu/packages/crates-graphics.scm   |24 +-
 gnu/packages/crates-io.scm |  1163 +-
 gnu/packages/databases.scm | 3 +-
 gnu/packages/debian.scm| 4 +-
 gnu/packages/dictionaries.scm  | 6 +-
 gnu/packages/diffoscope.scm| 8 +-
 gnu/packages/disk.scm  | 6 +-
 gnu/packages/docker.scm| 7 +-
 gnu/packages/documentation.scm |76 +-
 gnu/packages/emacs-xyz.scm |   844 +-
 gnu/packages/embedded.scm  |27 +
 gnu/packages/emulators.scm |16 +-
 gnu/packages/file-systems.scm  |24 +-
 gnu/packages/finance.scm   | 6 +-
 gnu/packages/firmware.scm  |78 +-
 gnu/packages/fonts.scm |35 +-
 gnu/packages/game-development.scm  |27 +-
 gnu/packages/games.scm |63 +-
 gnu/packages/geo.scm   |   143 +-
 gnu/packages/gnome-xyz.scm |41 +
 gnu/packages/gnome.scm |65 +-
 gnu/packages/gnupg.scm | 4 +-
 gnu/packages/gnuzilla.scm  | 8 +-
 gnu/packages/gtk.scm   |12 +-
 gnu/packages/guile-xyz.scm |22 +-
 gnu/packages/guile.scm | 4 +-
 gnu/packages/irc.scm   | 7 +-
 gnu/packages/linux.scm |46 +-
 gnu/packages/lisp-xyz.scm  |   744 +-
 gnu/packages/lisp.scm  | 4 +-
 gnu/packages/mail.scm  | 4 +-
 gnu/packages/mastodon.scm  | 4 +-
 gnu/packages/maths.scm |16 +-
 gnu/packages/mc.scm| 6 +-
 gnu/packages/messaging.scm |27 +-
 gnu/packages/mingw.scm |   113 +-
 gnu/packages/monitoring.scm|78 +
 gnu/packages/mpd.scm   | 4 +-
 gnu/packages/multiprecision.scm|77 +-
 gnu/packages/music.scm |   226 +-
 gnu/packages/networking.scm|10 +-
 gnu/packages/nim.scm   | 4 +-
 gnu/packages/package-management.scm|54 +-
 gnu/packages/patches/clementine-fix-sqlite.patch   |23 -
 .../clementine-remove-cryp

01/01: Merge branch 'master' into core-updates

2021-02-03 Thread guix-commits

cbaines pushed a commit to branch core-updates
in repository guix.

commit e740cc614096e768813280c718f9e96343ba41b3
Merge: 1b91868 63cf277
Author: Christopher Baines 
AuthorDate: Wed Feb 3 09:14:43 2021 +

Merge branch 'master' into core-updates

 Makefile.am|50 +-
 build-aux/build-self.scm   | 3 +
 build-aux/test-driver.scm  |   184 +-
 doc/contributing.texi  |12 +-
 doc/guix-cookbook.texi |   217 +-
 doc/guix.texi  |   733 +-
 etc/news.scm   |   141 +-
 gnu/bootloader/grub.scm|26 +-
 gnu/ci.scm | 7 +-
 gnu/installer.scm  | 2 +-
 gnu/installer/newt/keymap.scm  |21 +-
 gnu/installer/newt/services.scm| 7 +-
 gnu/local.mk   |29 +-
 gnu/packages/admin.scm |   127 +-
 gnu/packages/algebra.scm   |23 +-
 gnu/packages/animation.scm |33 +
 gnu/packages/aspell.scm| 4 +-
 gnu/packages/assembly.scm  |35 +-
 gnu/packages/astronomy.scm |   307 +-
 gnu/packages/audio.scm |71 +-
 gnu/packages/autotools.scm | 9 +-
 gnu/packages/backup.scm| 6 +-
 gnu/packages/bioinformatics.scm|   684 +-
 gnu/packages/bootloaders.scm   |   125 +-
 gnu/packages/browser-extensions.scm|10 +-
 gnu/packages/busybox.scm   | 6 +-
 gnu/packages/check.scm |90 +-
 gnu/packages/chemistry.scm |   300 +-
 gnu/packages/chromium.scm  |44 +-
 gnu/packages/ci.scm|67 +-
 gnu/packages/cmake.scm |29 +
 gnu/packages/compression.scm   |48 +-
 gnu/packages/connman.scm   | 8 +-
 gnu/packages/cpp.scm   |97 +-
 gnu/packages/cran.scm  |   693 +-
 gnu/packages/crates-graphics.scm   |   766 +-
 gnu/packages/crates-io.scm |  2039 +-
 gnu/packages/cups.scm  |72 +-
 gnu/packages/databases.scm |   125 +-
 gnu/packages/diffoscope.scm| 4 +-
 gnu/packages/disk.scm  |13 +-
 gnu/packages/dlang.scm |25 +-
 gnu/packages/dns.scm   |33 +-
 gnu/packages/education.scm |18 +-
 gnu/packages/efi.scm   |41 +-
 gnu/packages/elf.scm   | 4 +-
 gnu/packages/elixir.scm| 5 +-
 gnu/packages/emacs-xyz.scm |   509 +-
 gnu/packages/emacs.scm |22 +-
 gnu/packages/emulators.scm | 6 +-
 gnu/packages/engineering.scm   |39 +-
 gnu/packages/enlightenment.scm |13 +-
 gnu/packages/erlang.scm|15 +-
 gnu/packages/fcitx.scm |61 +-
 gnu/packages/fcitx5.scm|   102 +-
 gnu/packages/file-systems.scm  |37 +-
 gnu/packages/fonts.scm |63 +-
 gnu/packages/fpga.scm  |87 +
 gnu/packages/freedesktop.scm   | 9 +-
 gnu/packages/game-development.scm  |36 +-
 gnu/packages/games.scm |   280 +-
 gnu/packages/genimage.scm  | 3 +-
 gnu/packages/geo.scm   |27 +
 gnu/packages/gettext.scm   |42 +-
 gnu/packages/gl.scm| 7 +-
 gnu/packages/gnome-xyz.scm |51 +-
 gnu/packages/gnome.scm |38 +-
 gnu/packages/gnupg.scm |   101 +-
 gnu/packages/gnuzilla.scm  |20 +-
 gnu/packages/gps.scm   | 6 +-
 gnu/packages/graphics.scm  |55 +-
 gnu/packages/gstreamer.scm | 1 +
 gnu/packages/guile-xyz.scm |   100 +-
 gnu/packages/guile.scm | 4 +-
 gnu/packages/hardware.scm  |74 +
 gnu/packages/haskell-apps

01/01: Merge branch 'master' into core-updates

2020-06-14 Thread guix-commits

mbakke pushed a commit to branch core-updates
in repository guix.

commit 4193095e18b602705df94e38a8d60ef1fe380e49
Merge: a48a3f0 e88745a
Author: Marius Bakke 
AuthorDate: Sun Jun 14 16:24:34 2020 +0200

Merge branch 'master' into core-updates

 .dir-locals.el |8 +
 Makefile.am|   28 +-
 README |   25 +-
 build-aux/check-channel-news.scm   |   82 +
 build-aux/git-authenticate.scm |  218 +--
 build-aux/update-guix-package.scm  |3 +-
 configure.ac   |6 +-
 doc/build.scm  |   39 +-
 doc/contributing.texi  |   13 +-
 doc/guix-cookbook.texi |  179 +-
 doc/guix.texi  |  609 +--
 doc/images/gcc-core-mesboot0-graph.dot |  114 ++
 doc/images/gcc-mesboot-bag-graph.dot   |  123 --
 doc/local.mk   |2 +-
 etc/completion/bash/guix   |   74 +-
 etc/git/pre-push   |   49 +-
 etc/guix-install.sh|3 +-
 etc/news.scm   |   30 +
 gnu/bootloader.scm |   51 +-
 gnu/bootloader/depthcharge.scm |3 +-
 gnu/bootloader/extlinux.scm|3 +-
 gnu/bootloader/grub.scm|  368 ++--
 gnu/build/activation.scm   |4 +-
 gnu/build/file-systems.scm |6 +-
 gnu/build/hurd-boot.scm|  205 +++
 gnu/build/image.scm|   60 +-
 gnu/build/linux-boot.scm   |   96 +-
 gnu/build/shepherd.scm |   19 +-
 gnu/build/vm.scm   |   11 +-
 gnu/ci.scm |   20 +-
 gnu/image.scm  |   22 +-
 gnu/installer/final.scm|   22 +-
 gnu/local.mk   |   60 +-
 gnu/packages/admin.scm |  184 +-
 gnu/packages/adns.scm  |   13 +-
 gnu/packages/algebra.scm   |4 +-
 gnu/packages/aspell.scm|8 +-
 gnu/packages/assembly.scm  |8 +-
 gnu/packages/astronomy.scm |   10 +-
 gnu/packages/audio.scm |  100 +-
 gnu/packages/backup.scm|   53 +-
 gnu/packages/base.scm  |   27 +-
 gnu/packages/bash.scm  |   13 +-
 gnu/packages/benchmark.scm |4 +-
 gnu/packages/bioconductor.scm  | 1109 -
 gnu/packages/bioinformatics.scm|  669 +---
 gnu/packages/bittorrent.scm|   21 +-
 gnu/packages/boost.scm |   43 +-
 gnu/packages/bootloaders.scm   |6 +-
 gnu/packages/bootstrap.scm |8 +-
 gnu/packages/build-tools.scm   |   38 +
 gnu/packages/busybox.scm   |   20 +-
 gnu/packages/c.scm |  154 +-
 gnu/packages/calendar.scm  |   19 +-
 gnu/packages/ccache.scm|6 +-
 gnu/packages/cdrom.scm |4 +-
 gnu/packages/certs.scm |4 +-
 gnu/packages/check.scm |   38 +-
 gnu/packages/ci.scm|   10 +-
 gnu/packages/code.scm  |  110 +-
 gnu/packages/compression.scm   |   26 +-
 gnu/packages/cpp.scm   |   10 +-
 gnu/packages/cran.scm  |  613 +--
 gnu/packages/crates-io.scm |   44 +-
 gnu/packages/crypto.scm|9 +-
 gnu/packages/cryptsetup.scm|4 +-
 gnu/packages/cups.scm  |   12 +-
 gnu/packages/cybersecurity.scm |5 +-
 gnu/packages/databases.scm |  206 ++-
 gnu/packages/debug.scm |   36 +
 gnu/packages/dhall.scm |  143 ++
 gnu/packages/dictionaries.scm  |   10 +-
 gnu/packages/diffoscope.scm|  315 ++--
 gnu/packages/djvu.scm  |   26 +-
 gnu/packages/dns.scm   |   12 +-
 gnu/packages/docker.scm|   12 +-
 gnu/pack

01/01: Merge branch 'master' into core-updates

2020-05-06 Thread guix-commits

mbakke pushed a commit to branch core-updates
in repository guix.

commit c263cfdcde0402cf44be7b14841d567f00e0af11
Merge: 3b7f310 13c18af
Author: Marius Bakke 
AuthorDate: Wed May 6 23:37:40 2020 +0200

Merge branch 'master' into core-updates

 doc/guix.texi  | 4 +-
 gnu/local.mk   | 7 +-
 gnu/packages/audio.scm |   139 +-
 gnu/packages/chromium.scm  | 4 +-
 gnu/packages/disk.scm  |64 +-
 gnu/packages/emacs-xyz.scm |73 +
 gnu/packages/emacs.scm |12 +-
 gnu/packages/game-development.scm  |81 +
 gnu/packages/games.scm | 5 +-
 gnu/packages/gnome-xyz.scm |47 +
 gnu/packages/gnome.scm | 4 +-
 gnu/packages/gnuzilla.scm  |18 +-
 gnu/packages/javascript.scm| 4 +-
 gnu/packages/libedit.scm   |22 +
 gnu/packages/linux.scm |24 +-
 gnu/packages/lisp-xyz.scm  |   303 +-
 gnu/packages/package-management.scm|12 +-
 gnu/packages/password-utils.scm|41 +
 .../ableton-link-system-libraries-debian.patch |29 +
 .../gnome-todo-delete-esource-duplicate.patch  |10 +
 gnu/packages/patches/icecat-makeicecat.patch   | 4 +-
 .../icecat-use-older-reveal-hidden-html.patch  |70 +
 .../warsow-qfusion-fix-bool-return-type.patch  |22 +
 gnu/packages/patches/webkitgtk-share-store.patch   |19 +
 gnu/packages/radio.scm |65 +
 gnu/packages/text-editors.scm  |33 +
 gnu/packages/tmux.scm  | 5 +-
 gnu/packages/webkit.scm|12 +-
 gnu/services/admin.scm | 6 +-
 gnu/services/sound.scm |27 +-
 guix/build/syscalls.scm|23 +-
 po/doc/guix-manual.ru.po   | 18748 ++-
 32 files changed, 10696 insertions(+), 9241 deletions(-)

diff --cc gnu/local.mk
index be02f93,98bdf69..25b0dba
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@@ -1016,7 -1000,7 +1017,8 @@@ dist_patch_DATA =   

%D%/packages/patches/gmp-arm-asm-nothumb.patch  \
%D%/packages/patches/gmp-faulty-test.patch  \
%D%/packages/patches/gnome-shell-theme.patch\
 +  %D%/packages/patches/gnome-shell-disable-test.patch \
+   %D%/packages/patches/gnome-todo-delete-esource-duplicate.patch \
%D%/packages/patches/gnome-tweaks-search-paths.patch\
%D%/packages/patches/gnupg-default-pinentry.patch   \
%D%/packages/patches/gnutls-skip-trust-store-test.patch \
diff --cc gnu/packages/game-development.scm
index 6cae5ec,05cc152..d340271
--- a/gnu/packages/game-development.scm
+++ b/gnu/packages/game-development.scm
@@@ -2225,3 -2226,83 +2226,83 @@@ rigid body physics library written in C
  developers providing an advanced true color console, input, and lots of other
  utilities frequently used in roguelikes.")
  (license license:bsd-3)))
+ 
+ (define-public warsow-qfusion
+   ;; As of 2020-04-09, the latest stable version 2.1.0 is deprecated.
+   ;; The 2.5 beta as published on the homepage is commit
+   ;; c4de15df559410aff0ca6643724e24cddb0ecbbd
+   (let ((commit "c4de15df559410aff0ca6643724e24cddb0ecbbd"))
+ (package
+   (name "warsow-qfusion")
+   (version (git-version "2.5" "1" commit)) ; 2.5-beta
+   (source (origin
+ (method git-fetch)
+ (uri (git-reference
+   (url "https://github.com/Warsow/qfusion/";)
+   (commit commit)
+   (recursive? #t)))
+ (file-name (git-file-name name version))
+ (sha256
+  (base32
+   "0xv2yycr43p3xmq7lm6j6zb3cpcr6w00x7qg918faq0mw9j7v48g"))
+ ;; Issue reported here: 
https://github.com/Warsow/qfusion/issues/46
+ (patches (search-patches 
"warsow-qfusion-fix-bool-return-type.patch"
+   (build-system cmake-build-system)
+   (arguments
+`(#:tests? #f; No tests.
+  #:configure-flags '("-DQFUSION_GAME=Warsow")
+  #:modules
+  ((guix build utils)
+   (guix build cmake-build-system)
+   (ice-9 match))
+  #:phases
+  (modify-phases %standard-phases
+(add-after 'unpack 'change-to-build-dir
+  (lambda _
+(chdir "source")
+#t))
+(add-after 'install 'really-install
+

01/01: Merge branch 'master' into core-updates

2020-05-05 Thread guix-commits

mbakke pushed a commit to branch core-updates
in repository guix.

commit 87a40d7203a813921b3ef0805c2b46c0026d6c31
Merge: ba151b7 751d1f0
Author: Marius Bakke 
AuthorDate: Tue May 5 20:43:21 2020 +0200

Merge branch 'master' into core-updates

 .guix-authorizations   |  157 ++
 Makefile.am|7 +
 build-aux/git-authenticate.scm |  198 +-
 doc/contributing.texi  |   24 +-
 doc/guix-cookbook.texi |4 +-
 doc/guix.texi  |  136 +-
 gnu/build/bootloader.scm   |   56 +-
 gnu/build/file-systems.scm |   45 +-
 gnu/build/image.scm|  273 +++
 gnu/build/install.scm  |   21 +-
 gnu/build/vm.scm   |  175 +-
 gnu/ci.scm |   45 +-
 gnu/image.scm  |   76 +
 gnu/local.mk   |   11 +
 gnu/packages/algebra.scm   |   24 +
 gnu/packages/audio.scm |   31 +-
 gnu/packages/bioinformatics.scm|   42 +
 gnu/packages/check.scm |   25 +
 gnu/packages/chemistry.scm |  126 ++
 gnu/packages/crates-io.scm | 2108 +++-
 gnu/packages/databases.scm |6 +-
 gnu/packages/emacs-xyz.scm |   16 +-
 gnu/packages/enlightenment.scm |   76 +-
 gnu/packages/gnome.scm |1 +
 gnu/packages/heads.scm |  163 ++
 gnu/packages/image.scm |   17 +-
 gnu/packages/less.scm  |   44 +
 gnu/packages/libusb.scm|4 +-
 gnu/packages/linux.scm |   69 +-
 gnu/packages/lisp-xyz.scm  |6 +-
 gnu/packages/messaging.scm |   49 +-
 gnu/packages/monitoring.scm|   51 +-
 gnu/packages/music.scm |   22 +
 .../patches/collectd-5.11.0-noinstallvar.patch |   21 +
 .../patches/grocsvs-dont-use-admiral.patch |   69 +
 gnu/packages/patches/gromacs-tinyxml2.patch|   67 +
 gnu/packages/patches/musl-cross-locale.patch   |   20 +
 .../patches/rust-nettle-disable-vendor.patch   |   13 +
 .../patches/rust-nettle-sys-disable-vendor.patch   |   48 +
 gnu/packages/python-xyz.scm|7 +-
 gnu/packages/security-token.scm|   28 +
 gnu/packages/sequoia.scm   |  162 ++
 gnu/packages/spice.scm |   49 +
 gnu/packages/statistics.scm|   45 +-
 gnu/packages/video.scm |4 +-
 gnu/packages/virtualization.scm|4 +-
 gnu/packages/vpn.scm   |9 +-
 gnu/packages/xdisorg.scm   |   32 +
 gnu/packages/xorg.scm  |   22 +
 gnu/services/base.scm  |2 +-
 gnu/services/ssh.scm   |  106 +-
 gnu/system.scm |   50 +
 gnu/system/image.scm   |  532 +
 gnu/system/install.scm |1 +
 gnu/system/linux-initrd.scm|3 +
 gnu/system/vm.scm  |  216 +-
 gnu/tests/install.scm  |   97 +-
 guix/build/store-copy.scm  |1 +
 guix/openpgp.scm   | 1108 ++
 guix/scripts/system.scm|   13 +-
 tests/civodul.key  | 1345 +
 tests/dsa.key  |   25 +
 tests/ed25519.key  |   10 +
 tests/ed25519.sec  |   10 +
 tests/openpgp.scm  |  253 +++
 tests/rsa.key  |   18 +
 66 files changed, 7806 insertions(+), 692 deletions(-)

diff --cc gnu/local.mk
index 445c0cf,4e0521b..be02f93
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@@ -604,7 -607,7 +607,8 @@@ GNU_SYSTEM_MODULES =   
%D%/system.scm  \
%D%/system/accounts.scm \
%D%/system/file-systems.scm \
 +  %D%/system/hurd.scm \
+   %D%/system/image.scm\
%D%/system/install.scm  \
%D%/system/keyboard.scm \
%D%/system/linux-container.scm  \
@@@ -1

01/01: Merge branch 'master' into core-updates

2020-04-26 Thread guix-commits

mbakke pushed a commit to branch core-updates
in repository guix.

commit f589cbc4dc4119e3501a0c20822e72cf841d08f3
Merge: 0e72d49 2b82989
Author: Marius Bakke 
AuthorDate: Sun Apr 26 13:48:06 2020 +0200

Merge branch 'master' into core-updates

 doc/guix-cookbook.texi |  40 +++
 doc/guix.texi  | 127 +++--
 etc/news.scm   |  20 +++-
 gnu/local.mk   |   1 -
 gnu/packages/admin.scm |  48 
 gnu/packages/bootloaders.scm   |   7 +-
 gnu/packages/calcurse.scm  |   2 +-
 gnu/packages/check.scm |  13 ++-
 gnu/packages/chemistry.scm |   8 +-
 gnu/packages/compression.scm   |  37 ++
 gnu/packages/dns.scm   |  57 +
 gnu/packages/elixir.scm|   4 +-
 gnu/packages/finance.scm   |   4 +-
 gnu/packages/firmware.scm  |   6 +-
 gnu/packages/fontutils.scm |   4 +-
 gnu/packages/glib.scm  |   6 +-
 gnu/packages/linux.scm |  24 ++--
 gnu/packages/lisp-xyz.scm  |  51 +
 gnu/packages/lxde.scm  |  50 +---
 gnu/packages/mail.scm  |  33 ++
 gnu/packages/nim.scm   |   2 +-
 .../arm-trusted-firmware-disable-hdcp.patch|  82 -
 gnu/packages/pdf.scm   |  42 +--
 gnu/packages/photo.scm |   4 +-
 gnu/packages/pulseaudio.scm|   6 +-
 gnu/packages/python-web.scm|  17 +--
 gnu/packages/python-xyz.scm|  22 +++-
 gnu/packages/tex.scm   |   2 +-
 gnu/packages/video.scm |   4 +-
 gnu/packages/webkit.scm|   4 +-
 gnu/packages/wm.scm|  30 +
 gnu/system/vm.scm  |   2 -
 32 files changed, 514 insertions(+), 245 deletions(-)

diff --cc etc/news.scm
index ab09a10,10e0153..35e9a87
--- a/etc/news.scm
+++ b/etc/news.scm
@@@ -11,75 -10,9 +11,76 @@@
  (channel-news
   (version 0)
  
 + (entry (commit "a33eac038a811603c8b9ed106ae405a5f80a0e9d")
 +(title (en "GNU C Library upgraded")
 +   (de "GNU-C-Bibliothek aktualisiert")
 +   (es "Actualización de la biblioteca C de GNU")
 +   (fr "Mise à jour de la bibliothèque C de GNU")
 +   (nl "GNU C-bibliotheek bijgewerkt"))
 +(body
 + (en "The GNU C Library (glibc) has been upgraded to version 2.31.  To
 +run previously-installed programs linked against glibc 2.29, you need to
 +install locale data for version 2.29 in addition to locale data for 2.31:
 +
 +@example
 +guix install glibc-locales glibc-locales-2.29
 +@end example
 +
 +On Guix System, you can adjust the @code{locale-libcs} field of your
 +@code{operating-system} form.  Run @code{info \"(guix) Locales\"}, for more
 +info.")
 + (de "Die GNU-C-Bibliothek (glibc) wurde auf Version 2.31
 +aktualisiert. Um zuvor installierte Programme, die an glibc 2.29 gebunden
 +worden sind, weiter benutzen zu können, müssen Sie Locale-Daten für Version
 +2.29 zusätzlich zu den Locale-Daten für 2.31 installieren:
 +
 +@example
 +guix install glibc-locales glibc-locales-2.29
 +@end example
 +
 +Auf Guix System genügt es, das @code{locale-libcs}-Feld Ihrer
 +@code{operating-system}-Form anzupassen. Führen Sie @code{info \"(guix.de)
 +Locales\"} aus, um weitere Informationen dazu zu erhalten.")
 + (es "Se ha actualizado la biblioteca de C de GNU (glibc) a la versión
 +2.31. Para ejecutar programas instalados previamente que se encuentren
 +enlazados con glibc 2.29, es necesario que instale los datos de localización
 +de la versión 2.29 junto a los datos de localización de la versión 2.31:
 +
 +@example
 +guix install glibc-locales glibc-locales-2.29
 +@end example
 +
 +En el sistema Guix, puede ajustar el campo @code{locale-libcs} de su
 +declaración @code{operating-system}. Ejecute @code{info \"(guix.es)
 +Localizaciones\"} para obtener más información.")
 + (fr "La bibliothèque C de GNU (glibc) a été mise à jour en version
 +2.31.  Pour pouvoir lancer tes programmes déjà installés et liés à glibc 2.29,
 +tu dois installer les données pour la version 2.29 en plus des données de
 +régionalisation pour la version 2.31:
 +
 +@example
 +guix install glibc-locales glibc-locales-2.29
 +@end example
 +
 +Sur le système Guix, tu peux ajuster le champ @code{locale-libcs} de ta forme
 +@code{operating-system}.  Lance @code{info \"(guix.fr) Régionalisation\"} pour
 +plus de

01/01: Merge branch 'master' into core-updates

2020-04-23 Thread guix-commits

mbakke pushed a commit to branch core-updates
in repository guix.

commit 030f6f489fe9544f35ebaf95135acd1dd67ce63f
Merge: 95c1492 938df0d
Author: Marius Bakke 
AuthorDate: Thu Apr 23 13:33:09 2020 +0200

Merge branch 'master' into core-updates

 Conflicts:
etc/news.scm
gnu/local.mk
gnu/packages/bootloaders.scm
gnu/packages/linphone.scm
gnu/packages/linux.scm
gnu/packages/tls.scm
gnu/system.scm

 doc/build.scm  |2 +-
 doc/guix-cookbook.texi |   51 +
 doc/guix.texi  |  121 ++-
 etc/news.scm   |   19 +
 gnu/bootloader/u-boot.scm  |   11 +
 gnu/local.mk   |   15 +-
 gnu/packages/admin.scm |   14 +-
 gnu/packages/algebra.scm   |4 +-
 gnu/packages/bootloaders.scm   |   34 +-
 gnu/packages/chromium.scm  |8 +-
 gnu/packages/compression.scm   |   13 +
 gnu/packages/cran.scm  |   33 +-
 gnu/packages/databases.scm |   17 +-
 gnu/packages/disk.scm  |   48 +
 gnu/packages/emacs-xyz.scm |   94 +-
 gnu/packages/fonts.scm |   84 +-
 gnu/packages/genealogy.scm |2 +-
 gnu/packages/gnome.scm |  133 ++-
 gnu/packages/gps.scm   |6 +-
 gnu/packages/gtk.scm   |   28 +-
 gnu/packages/guile-xyz.scm |   68 +-
 gnu/packages/java.scm  |   57 +-
 gnu/packages/linphone.scm  |   11 +
 gnu/packages/linux.scm |   51 +-
 gnu/packages/mail.scm  |   74 +-
 gnu/packages/maths.scm |   69 +-
 gnu/packages/networking.scm|   52 +
 gnu/packages/parallel.scm  |6 +-
 .../patches/dune-istl-2.7-fix-non-mpi-tests.patch  |   82 ++
 .../patches/emacs-dired-toggle-sudo-emacs-26.patch |   49 -
 .../libqalculate-3.8.0-libcurl-ssl-fix.patch   |   53 +
 .../patches/u-boot-DT-for-Pinebook-Pro.patch   | 1132 
 .../u-boot-add-boe-nv140fhmn49-display.patch   |   29 +
 .../patches/u-boot-gpio-keys-binding-cons.patch|   37 +
 .../patches/u-boot-leds-common-binding-con.patch   |  115 ++
 .../u-boot-support-Pinebook-Pro-laptop.patch   |  367 +++
 .../patches/u-boot-video-rockchip-fix-build.patch  |   48 +
 gnu/packages/php.scm   |6 +-
 gnu/packages/python-xyz.scm|   38 +
 gnu/packages/qt.scm|2 +-
 gnu/packages/rdf.scm   |   47 +-
 gnu/packages/telephony.scm |   10 +-
 gnu/packages/tls.scm   |   19 +
 gnu/packages/version-control.scm   |   10 +-
 gnu/packages/video.scm |   33 +-
 gnu/packages/visidata.scm  |   64 ++
 gnu/packages/web-browsers.scm  |   62 ++
 gnu/packages/wget.scm  |3 +-
 gnu/packages/xdisorg.scm   |2 +-
 gnu/packages/xfce.scm  |   53 +-
 gnu/services.scm   |   17 +
 gnu/services/base.scm  |   24 +-
 gnu/services/desktop.scm   |4 +-
 gnu/services/mail.scm  |7 +-
 gnu/services/networking.scm|  119 ++
 gnu/services/shepherd.scm  |3 +-
 gnu/services/spice.scm |2 +-
 gnu/system.scm |  158 +--
 gnu/system/install.scm |4 +-
 gnu/tests/linux-modules.scm|   11 +-
 gnu/tests/ssh.scm  |5 +-
 gnu/tests/web.scm  |5 +-
 guix/build/syscalls.scm|3 +-
 guix/gexp.scm  |   12 +-
 guix/git-download.scm  |   10 +
 guix/packages.scm  |6 +-
 guix/profiles.scm  |3 +-
 guix/self.scm  |  110 +-
 tests/print.scm|   16 +-
 69 files changed, 3400 insertions(+), 505 deletions(-)

diff --cc etc/news.scm
index b498ce1,cfe2ee7..0bdde6a
--- a/etc/news.scm
+++ b/etc/news.scm
@@@ -11,15 -10,25 +11,34 @@@
  (channel-news
   (version 0)
  
+  (entry (commit "e1e6491226347d

01/01: Merge branch 'master' into core-updates

2020-04-19 Thread guix-commits

mbakke pushed a commit to branch core-updates
in repository guix.

commit 7abe35febe4234609e14e169b6fcc0cbaf4c7119
Merge: 457ded4 5c10d55
Author: Marius Bakke 
AuthorDate: Sun Apr 19 16:53:01 2020 +0200

Merge branch 'master' into core-updates

 Makefile.am|   3 +-
 build-aux/git-authenticate.scm |   7 +-
 doc/guix.texi  |  84 +-
 doc/local.mk   |   3 +-
 doc/package-hello.json |  31 +
 gnu/installer.scm  |  20 +---
 gnu/installer/connman.scm  |   1 +
 gnu/local.mk   |   1 +
 gnu/packages/admin.scm |   4 +-
 gnu/packages/aidc.scm  |  67 +--
 gnu/packages/augeas.scm|   9 +-
 gnu/packages/backup.scm|   4 +-
 gnu/packages/bioconductor.scm  |  10 ++
 gnu/packages/bioinformatics.scm|  84 +++---
 gnu/packages/calendar.scm  |  17 ++-
 gnu/packages/chromium.scm  |   4 +-
 gnu/packages/ci.scm|  12 +-
 gnu/packages/compression.scm   |   2 +-
 gnu/packages/cran.scm  |  31 -
 gnu/packages/databases.scm |   2 +-
 gnu/packages/diffoscope.scm|  12 +-
 gnu/packages/dns.scm   |   4 +-
 gnu/packages/education.scm |  41 +++
 gnu/packages/emacs-xyz.scm |   4 +-
 gnu/packages/file-systems.scm  |   4 +-
 gnu/packages/finance.scm   | 107 +++--
 gnu/packages/games.scm |   8 +-
 gnu/packages/gnome.scm |  28 +
 gnu/packages/gpodder.scm   |  22 +++-
 gnu/packages/guile-xyz.scm |  17 +--
 gnu/packages/image.scm |  19 ++--
 gnu/packages/kde-frameworks.scm|   2 +-
 gnu/packages/linux.scm |  12 +-
 gnu/packages/mail.scm  |  20 ++--
 gnu/packages/mastodon.scm  |   4 +-
 gnu/packages/networking.scm|   4 +-
 gnu/packages/node-xyz.scm  |  24 
 .../patches/python-jedi-sort-project-test.patch|  18 +++
 gnu/packages/pdf.scm   |  10 +-
 gnu/packages/python-xyz.scm|  68 +--
 gnu/packages/radio.scm | 119 +++
 gnu/packages/vim.scm   |   4 +-
 gnu/packages/xfce.scm  |  25 ++--
 gnu/packages/xorg.scm  |   6 +-
 gnu/services/base.scm  | 124 +---
 gnu/services/sddm.scm  |   2 +-
 gnu/services/shepherd.scm  | 126 -
 gnu/system/shadow.scm  |  11 +-
 guix/build/syscalls.scm|  50 +++-
 guix/gnupg.scm |  11 +-
 guix/import/json.scm   |  61 +-
 guix/import/print.scm  |  96 
 guix/import/utils.scm  |  36 --
 guix/scripts/build.scm |   7 +-
 guix/scripts/import/json.scm   |  12 +-
 guix/scripts/package.scm   |   7 +-
 guix/status.scm|   6 +-
 guix/tests/git.scm |  37 +-
 guix/ui.scm|  14 +--
 59 files changed, 1075 insertions(+), 503 deletions(-)

01/01: Merge branch 'master' into core-updates

2020-04-15 Thread guix-commits

mbakke pushed a commit to branch core-updates
in repository guix.

commit bd21acf6c390e4fe87eb6053f0b5185d6ecbcf9f
Merge: a4f1a7e b44e19a
Author: Marius Bakke 
AuthorDate: Wed Apr 15 19:26:55 2020 +0200

Merge branch 'master' into core-updates

 Makefile.am|29 +-
 NEWS   |   146 +-
 build-aux/compile-all.scm  |12 +-
 doc/guix.texi  | 5 +-
 etc/release-manifest.scm   |30 +-
 gnu/installer.scm  | 5 +-
 gnu/local.mk   | 4 +-
 gnu/packages/bioconductor.scm  |16 +-
 gnu/packages/bioinformatics.scm|14 +-
 gnu/packages/bootloaders.scm   | 4 +-
 gnu/packages/cook.scm  | 8 +
 gnu/packages/cran.scm  |   117 +-
 gnu/packages/dlang.scm |51 +-
 gnu/packages/emacs-xyz.scm |   209 +-
 gnu/packages/engineering.scm   |32 +-
 gnu/packages/games.scm |50 +
 gnu/packages/gnome.scm | 3 +-
 gnu/packages/gnuzilla.scm  | 2 +-
 gnu/packages/gpodder.scm   | 6 +-
 gnu/packages/guile-xyz.scm |88 +-
 gnu/packages/hardware.scm  |31 +
 gnu/packages/i2p.scm   | 8 +-
 gnu/packages/kawa.scm  |16 +-
 gnu/packages/linux.scm |24 +-
 gnu/packages/lisp-xyz.scm  |81 +-
 gnu/packages/lisp.scm  |39 +-
 gnu/packages/mail.scm  | 4 +-
 gnu/packages/man.scm   | 4 +-
 gnu/packages/mpd.scm   | 4 +-
 gnu/packages/networking.scm| 4 +-
 gnu/packages/package-management.scm| 8 +-
 gnu/packages/patches/gdm-default-session.patch |91 +
 .../libvpx-use-after-free-in-postproc.patch|34 -
 .../patches/python-jedi-deleted-variables.patch|38 -
 gnu/packages/patches/txr-shell.patch   |59 -
 gnu/packages/perl.scm  |   190 +
 gnu/packages/python-xyz.scm|42 +-
 gnu/packages/radio.scm |21 +-
 gnu/packages/shells.scm| 4 +-
 gnu/packages/statistics.scm|81 +-
 gnu/packages/version-control.scm   |10 +-
 gnu/packages/video.scm |23 +-
 gnu/packages/virtualization.scm|21 +-
 gnu/packages/webkit.scm| 6 +-
 gnu/services/linux.scm | 1 -
 gnu/services/shepherd.scm  | 7 +
 gnu/system/install.scm |43 +-
 guix/scripts/weather.scm   | 5 +-
 po/doc/guix-manual.de.po   | 18793 ---
 po/doc/guix-manual.es.po   | 18819 ---
 po/doc/guix-manual.ru.po   |   502 +-
 po/guix/de.po  |  1262 +-
 po/guix/es.po  |  1266 +-
 po/guix/fr.po  |  1262 +-
 po/guix/pt_BR.po   |  1266 +-
 po/packages/de.po  |  9349 
 po/packages/fr.po  | 23311 +++
 57 files changed, 42894 insertions(+), 34666 deletions(-)

diff --cc gnu/local.mk
index 0d49838,952fc55..b11876d
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@@ -941,12 -926,17 +941,13 @@@ dist_patch_DATA =   

%D%/packages/patches/gcc-8-strmov-store-file-names.patch\
%D%/packages/patches/gcc-9-asan-fix-limits-include.patch\
%D%/packages/patches/gcc-9-strmov-store-file-names.patch\
 -  %D%/packages/patches/gd-CVE-2018-5711.patch \
 -  %D%/packages/patches/gd-CVE-2018-1000222.patch  \
 -  %D%/packages/patches/gd-CVE-2019-6977.patch \
 -  %D%/packages/patches/gd-CVE-2019-6978.patch \
%D%/packages/patches/gd-fix-tests-on-i686.patch \
 -  %D%/packages/patches/gd-freetype-test-failure.patch \
 +  %D%/packages/patches/gd-brect-bounds.patch  \
+   %D%/packages/patches/gdm-default-session.patch  \
%D%/packages/patches/geoclue-config.patch   \
 -  %D%/packages/patches/ghc-8.0-fall-back-to-madv_dontneed.patch \
 -  %D%/pa

01/01: Merge branch 'master' into core-updates

2020-04-10 Thread guix-commits

mbakke pushed a commit to branch core-updates
in repository guix.

commit bdb90df764661c11b37c988ea129c8e7a01b1889
Merge: b859a1b 8ec9c5f
Author: Marius Bakke 
AuthorDate: Sat Apr 11 00:10:23 2020 +0200

Merge branch 'master' into core-updates

 doc/guix.texi  |  12 +
 etc/news.scm   |  10 +-
 gnu/build/vm.scm   |  19 ++
 gnu/installer.scm  |  14 +-
 gnu/installer/keymap.scm   |  10 +-
 gnu/installer/newt/keymap.scm  |  82 +-
 gnu/installer/record.scm   |   3 +-
 gnu/installer/tests.scm|   9 +-
 gnu/installer/utils.scm|   5 +-
 gnu/local.mk   |   9 +-
 gnu/packages/audio.scm |  36 +++
 gnu/packages/backup.scm|  16 +-
 gnu/packages/bioinformatics.scm|   2 +-
 gnu/packages/cdrom.scm |  20 +-
 gnu/packages/cpp.scm   |  10 +-
 gnu/packages/cran.scm  |   5 +-
 gnu/packages/cross-base.scm|   5 +-
 gnu/packages/databases.scm |  28 +-
 gnu/packages/disk.scm  |  50 
 gnu/packages/distributed.scm   |   4 +-
 gnu/packages/emacs-xyz.scm | 107 ---
 gnu/packages/finance.scm   |  39 +++
 gnu/packages/games.scm | 116 
 gnu/packages/graphics.scm  |  56 
 gnu/packages/ham-radio.scm | 308 -
 gnu/packages/haskell-apps.scm  |   2 +-
 gnu/packages/haskell-xyz.scm   |   2 +-
 gnu/packages/image-viewers.scm | 125 ++---
 gnu/packages/kde-pim.scm   |   2 +-
 gnu/packages/linux.scm |  12 +-
 gnu/packages/music.scm |   5 +-
 gnu/packages/nano.scm  |   4 +-
 gnu/packages/ntp.scm   |  70 -
 ...ly-relo.patch => akonadi-not-relocatable.patch} |   0
 ...atch => binutils-mingw-w64-deterministic.patch} |   0
 ...mp.patch => binutils-mingw-w64-timestamp.patch} |   0
 .../patches/kmscon-runtime-keymap-switch.patch |  27 +-
 ...BitmapTo.patch => sdl-pango-header-guard.patch} |   0
 gnu/packages/python-science.scm|   3 -
 gnu/packages/python-xyz.scm| 107 +--
 gnu/packages/sdl.scm   |  14 +-
 gnu/packages/ssh.scm   |  14 +-
 gnu/packages/video.scm |   4 +-
 gnu/packages/xfce.scm  |   4 +-
 gnu/services/desktop.scm   |   3 +-
 gnu/services/web.scm   |   4 +-
 gnu/system/vm.scm  |  37 ++-
 gnu/tests/install.scm  |   9 +-
 gnu/tests/networking.scm   |   3 +-
 guix/download.scm  |  10 +-
 guix/lint.scm  |   7 +-
 51 files changed, 1151 insertions(+), 292 deletions(-)

diff --cc etc/news.scm
index ba15f12,fd75225..61fc6b6
--- a/etc/news.scm
+++ b/etc/news.scm
@@@ -16,16 -17,13 +17,21 @@@
  service responsible for log rotation, has been added to @code{%base-services}.
  If your operating system configuration for Guix System is explicitly adding
  @code{rottlog-service-type} to the services, you should now remove it.  See
- the ``Log Rotation'' section of the manual for more information.")))
+ the ``Log Rotation'' section of the manual for more information.")
+   (de "Eine Instanz des @code{rottlog-service-type} für
+ Log-Rotation wurde zu den @code{%base-services} hinzugefügt.  Wenn der
+ Systemdienst bereits in Ihrer Konfiguration für Guix System ausdrücklich
+ genannt wurde, sollten Sie ihn jetzt daraus entfernen.  Siehe den Abschnitt
+ „Log-Rotation“ im Handbuch für weitere Informationen.")))
  
 + (entry (commit "b6bee63bed4f013064c0d902e7c8b83ed7514ade")
 +(title (en "@code{guile} package now refers to version 3.0"))
 +(body (en "The @code{guile} package has been upgraded to version 3.0
 + (instead of 2.2).  The @code{guile3.0-} packages have been renamed to their
 +original name, and @code{guile2.2-} variants of these packages have been
 +defined.  Additionally, derivations are now all built with Guile 3.0, and
 +system services also run on 3.0.")))
 +
   (entry (commit "e3e1a7ba08af2d58c47264c543617e499c239444")
  (title (en "@command{guix pull} now supports SSH authenticated
  repositories")
diff --cc gnu/local.mk
index b10c856,73f9d5d..

01/01: Merge branch 'master' into core-updates

2020-03-30 Thread guix-commits

mbakke pushed a commit to branch core-updates
in repository guix.

commit ae0badf5bb791428423a98d4e4e2b8d297a5d4be
Merge: ee401ed 927f365
Author: Marius Bakke 
AuthorDate: Mon Mar 30 12:17:33 2020 +0200

Merge branch 'master' into core-updates

 Conflicts:
gnu/packages/admin.scm
gnu/packages/commencement.scm
gnu/packages/guile.scm
gnu/packages/linux.scm
gnu/packages/package-management.scm
gnu/packages/pulseaudio.scm
gnu/packages/web.scm

 .mailmap   |   2 +-
 build-aux/git-authenticate.scm |   6 +-
 doc/guix.texi  |   6 +-
 gnu/build/vm.scm   |  11 +-
 gnu/local.mk   |   4 +-
 gnu/packages/admin.scm | 147 +-
 gnu/packages/algebra.scm   |  43 +--
 gnu/packages/assembly.scm  |   4 +-
 gnu/packages/bioconductor.scm  |   4 +-
 gnu/packages/cpp.scm   |   6 +-
 gnu/packages/cran.scm  |  38 ++-
 gnu/packages/crypto.scm|  10 +-
 gnu/packages/cybersecurity.scm |  46 +++
 gnu/packages/dictionaries.scm  |   4 +-
 gnu/packages/education.scm |   4 +-
 gnu/packages/emacs-xyz.scm | 126 
 gnu/packages/emacs.scm |   5 +-
 gnu/packages/emulators.scm |   3 +-
 gnu/packages/engineering.scm   |   3 -
 gnu/packages/finance.scm   |   3 -
 gnu/packages/firmware.scm  |   2 +-
 gnu/packages/fonts.scm |   7 +-
 gnu/packages/fpga.scm  |   7 +-
 gnu/packages/games.scm |  42 ---
 gnu/packages/gnome-xyz.scm |  17 +-
 gnu/packages/gnome.scm |  69 -
 gnu/packages/gnupg.scm |   8 +-
 gnu/packages/gnuzilla.scm  |   5 -
 gnu/packages/graph.scm |   7 +-
 gnu/packages/guile-xyz.scm |  50 +++-
 gnu/packages/haskell-apps.scm  |  40 +++
 gnu/packages/haskell-web.scm   |  41 ++-
 gnu/packages/haskell-xyz.scm   | 323 -
 gnu/packages/image.scm |   6 +-
 gnu/packages/java.scm  | 201 +++--
 gnu/packages/kde-pim.scm   |   2 +-
 gnu/packages/lean.scm  |   2 +-
 gnu/packages/libreoffice.scm   |   4 +-
 gnu/packages/linux.scm |  21 +-
 gnu/packages/lisp-xyz.scm  |  31 +-
 gnu/packages/machine-learning.scm  |  19 +-
 gnu/packages/mail.scm  |  13 +-
 gnu/packages/man.scm   |  14 +-
 gnu/packages/maths.scm |  11 +-
 gnu/packages/mpd.scm   |   4 +-
 gnu/packages/mtools.scm|   6 +-
 gnu/packages/multiprecision.scm|  46 ++-
 gnu/packages/music.scm | 106 ++-
 gnu/packages/networking.scm|  24 +-
 gnu/packages/ocr.scm   |  16 +-
 gnu/packages/package-management.scm|   6 +-
 gnu/packages/patches/gnupg-default-pinentry.patch  |  62 +++-
 .../patches/hash-extender-test-suite.patch |  13 -
 gnu/packages/pdf.scm   |  74 -
 gnu/packages/php.scm   |   3 -
 gnu/packages/plotutils.scm |   4 +-
 gnu/packages/pulseaudio.scm|   2 +-
 gnu/packages/python-xyz.scm| 110 +--
 gnu/packages/qt.scm|   6 +-
 gnu/packages/rust.scm  | 121 ++--
 gnu/packages/speech.scm|  67 +
 gnu/packages/statistics.scm|   8 +-
 gnu/packages/syndication.scm   |   8 +-
 gnu/packages/terminals.scm |   5 +-
 gnu/packages/version-control.scm   |  10 +-
 gnu/packages/video.scm |  13 +-
 gnu/packages/virtualization.scm|   3 -
 gnu/packages/vulkan.scm|   3 -
 gnu/packages/web.scm   |  43 ++-
 gnu/packages/wm.scm|   5 +-
 gnu/packages/xdisorg.scm   |  10 +-
 gnu/packages/xfce.scm  |   4 +-
 gnu/services/nfs.scm

01/01: Merge branch 'master' into core-updates

2020-03-21 Thread guix-commits

mbakke pushed a commit to branch core-updates
in repository guix.

commit d19b14c8349ce8cacb62619ab68953265daeeca7
Merge: 680b561 ee4c927
Author: Marius Bakke 
AuthorDate: Sat Mar 21 22:16:02 2020 +0100

Merge branch 'master' into core-updates

 doc/guix.texi  |   33 +-
 gnu/local.mk   |   12 +-
 gnu/packages/admin.scm |4 +-
 gnu/packages/audio.scm |4 +-
 gnu/packages/base.scm  |   10 +-
 gnu/packages/bioconductor.scm  |   21 +-
 gnu/packages/bootloaders.scm   |7 +-
 gnu/packages/build-tools.scm   |   26 +
 gnu/packages/calendar.scm  |   58 +
 gnu/packages/cedille.scm   |9 +-
 gnu/packages/chromium.scm  |8 +-
 gnu/packages/code.scm  |3 +-
 gnu/packages/cran.scm  |  208 +++-
 gnu/packages/crates-io.scm | 1114 +++-
 gnu/packages/crypto.scm|   45 +
 gnu/packages/databases.scm |   30 +-
 gnu/packages/django.scm|   26 +-
 gnu/packages/docker.scm|   11 +-
 gnu/packages/emacs-xyz.scm |  190 +---
 gnu/packages/flex.scm  |   13 -
 gnu/packages/freedesktop.scm   |   40 +-
 gnu/packages/games.scm |  130 +++
 gnu/packages/gcc.scm   |   29 +-
 gnu/packages/geo.scm   |   20 +-
 gnu/packages/gnome-xyz.scm |   42 +
 gnu/packages/gnome.scm |  358 ++-
 gnu/packages/gnupg.scm |   25 +-
 gnu/packages/graphics.scm  |2 +-
 gnu/packages/graphviz.scm  |2 +-
 gnu/packages/gtk.scm   |   30 +-
 gnu/packages/guile-xyz.scm |2 +-
 gnu/packages/haskell-apps.scm  |   26 +-
 gnu/packages/haskell-xyz.scm   |   70 +-
 gnu/packages/hyperledger.scm   |3 +-
 gnu/packages/image.scm |4 +-
 gnu/packages/java.scm  |   10 +-
 gnu/packages/kde-pim.scm   |  842 ++-
 gnu/packages/kde.scm   |   31 +
 gnu/packages/libreoffice.scm   |   72 +-
 gnu/packages/linux.scm |   62 +-
 gnu/packages/lisp-xyz.scm  |8 +-
 gnu/packages/logging.scm   |4 +-
 gnu/packages/lua.scm   |2 +-
 gnu/packages/machine-learning.scm  |   82 +-
 gnu/packages/mail.scm  |2 +-
 gnu/packages/maths.scm |2 +-
 gnu/packages/networking.scm|   43 +
 gnu/packages/ocaml.scm |   10 +-
 gnu/packages/opencl.scm|2 +-
 gnu/packages/package-management.scm|7 +
 .../patches/date-output-pkg-config-files.patch |   60 ++
 gnu/packages/patches/ffmpeg-prefer-dav1d.patch |   43 +
 gnu/packages/patches/foobillard++-pkg-config.patch |   34 +
 .../patches/hash-extender-test-suite.patch |   13 +
 ...kdepim-runtime-Fix-missing-link-libraries.patch |   42 +
 .../kdiagram-Fix-missing-link-libraries.patch  |   23 +
 .../patches/kmail-Fix-missing-link-libraries.patch |   41 +
 .../libksieve-Fix-missing-link-libraries.patch |   59 ++
 .../patches/python-faker-fix-build-32bit.patch |   36 -
 gnu/packages/perl-compression.scm  |6 +-
 gnu/packages/php.scm   |8 +-
 gnu/packages/python-crypto.scm |2 +-
 gnu/packages/python-xyz.scm|  241 +++--
 gnu/packages/rpc.scm   |  177 
 gnu/packages/rsync.scm |   10 +-
 gnu/packages/ruby.scm  |   11 +-
 gnu/packages/statistics.scm|8 +-
 gnu/packages/time.scm  |   27 +-
 gnu/packages/version-control.scm   |2 +-
 gnu/packages/video.scm |6 +
 gnu/packages/vim.scm   |4 +-
 gnu/packages/web.scm   |   20 +-
 gnu/packages/wm.scm|   11 +-
 gnu/packages/xorg.scm  |  100 ++
 gnu/system/shadow.scm  |   10 +-
 gnu/tests/install.scm  |8 +-
 guix/in

01/01: Merge branch 'master' into core-updates

2020-03-19 Thread guix-commits

mbakke pushed a commit to branch core-updates
in repository guix.

commit dd0568a77951804d97884a0a0a3a3ed38ca0a184
Merge: 142cd4d baab9ee
Author: Marius Bakke 
AuthorDate: Thu Mar 19 08:50:35 2020 +0100

Merge branch 'master' into core-updates

 build-aux/build-self.scm |  3 ++-
 doc/guix.texi|  2 +-
 gnu/packages/admin.scm   |  4 ++--
 gnu/packages/cran.scm|  4 ++--
 gnu/packages/databases.scm   |  4 ++--
 gnu/packages/dns.scm |  4 ++--
 gnu/packages/emacs-xyz.scm   |  2 +-
 gnu/packages/gnome.scm   | 15 +--
 gnu/packages/gpodder.scm |  2 +-
 gnu/packages/image-viewers.scm   |  4 ++--
 gnu/packages/jrnl.scm|  2 +-
 gnu/packages/linux.scm   |  8 
 gnu/packages/lisp-xyz.scm|  4 ++--
 gnu/packages/mail.scm| 12 +++-
 gnu/packages/messaging.scm   |  8 
 gnu/packages/music.scm   | 10 +-
 gnu/packages/networking.scm  |  5 ++---
 gnu/packages/ocaml.scm   | 10 +-
 gnu/packages/python-xyz.scm  | 24 ++--
 gnu/packages/tls.scm | 19 +++
 gnu/packages/version-control.scm |  9 +++--
 gnu/packages/video.scm   |  4 ++--
 gnu/packages/web.scm |  4 ++--
 gnu/packages/webkit.scm  |  8 
 24 files changed, 102 insertions(+), 69 deletions(-)

diff --cc gnu/packages/tls.scm
index ce8abfb,bb80d86..45ee67f
--- a/gnu/packages/tls.scm
+++ b/gnu/packages/tls.scm
@@@ -280,7 -306,8 +280,8 @@@ required structures."
  (define-public openssl
(package
 (name "openssl")
 -   (version "1.1.1c")
 +   (version "1.1.1d")
+(replacement openssl-1.1.1e)
 (source (origin
   (method url-fetch)
   (uri (list (string-append 
"https://www.openssl.org/source/openssl-";

01/01: Merge branch 'master' into core-updates

2020-03-14 Thread guix-commits

mbakke pushed a commit to branch core-updates
in repository guix.

commit 961d2ee2695b38503b463d055e9c7edbcc0bf307
Merge: 7cf79d7 aebba13
Author: Marius Bakke 
AuthorDate: Sat Mar 14 13:13:40 2020 +0100

Merge branch 'master' into core-updates

 .dir-locals.el |   1 +
 .gitignore |   1 +
 Makefile.am|   7 +-
 build-aux/check-available-binaries.scm |  78 --
 configure.ac   |   6 +-
 doc/contributing.texi  |  11 +-
 doc/guix.texi  |  36 ++-
 etc/guix-install.sh|  11 +
 etc/init.d/guix-daemon.in  |  78 ++
 etc/release-manifest.scm   | 108 
 gnu/ci.scm |   3 +-
 gnu/local.mk   |   2 +-
 gnu/packages/admin.scm |  30 ++-
 gnu/packages/algebra.scm   |   9 +-
 gnu/packages/assembly.scm  |  29 +++
 gnu/packages/audio.scm |  10 +-
 gnu/packages/autotools.scm |   2 +-
 gnu/packages/backup.scm|   5 +-
 gnu/packages/bash.scm  |   2 +-
 gnu/packages/bioconductor.scm  |  16 +-
 gnu/packages/bioinformatics.scm|  41 +++-
 gnu/packages/boost.scm |  25 +-
 gnu/packages/cdrom.scm |   2 +-
 gnu/packages/certs.scm |   4 +-
 gnu/packages/check.scm |   4 +-
 gnu/packages/code.scm  |   2 +-
 gnu/packages/compression.scm   |   7 +-
 gnu/packages/cran.scm  | 104 +---
 gnu/packages/crypto.scm|   4 +-
 gnu/packages/cups.scm  |   8 +-
 gnu/packages/databases.scm |  17 +-
 gnu/packages/digest.scm|   4 +-
 gnu/packages/disk.scm  |   9 +-
 gnu/packages/docker.scm|   6 +-
 gnu/packages/embedded.scm  |   2 +-
 gnu/packages/emulators.scm |   6 +-
 gnu/packages/engineering.scm   |   2 +-
 gnu/packages/enlightenment.scm |  17 +-
 gnu/packages/finance.scm   |   4 +-
 gnu/packages/flashing-tools.scm|   2 +-
 gnu/packages/fltk.scm  |   2 +-
 gnu/packages/fontutils.scm |   2 +-
 gnu/packages/freedesktop.scm   |  17 +-
 gnu/packages/ftp.scm   |   2 +-
 gnu/packages/games.scm |  47 +++-
 gnu/packages/gd.scm|   2 +-
 gnu/packages/gdb.scm   |  35 +--
 gnu/packages/geo.scm   |  36 ++-
 gnu/packages/gimp.scm  |   8 +-
 gnu/packages/gl.scm|  24 +-
 gnu/packages/gnome.scm |  35 ++-
 gnu/packages/golang.scm|  51 +++-
 gnu/packages/gps.scm   |  10 +-
 gnu/packages/graphics.scm  |   9 +-
 gnu/packages/graphviz.scm  |   5 +-
 gnu/packages/gtk.scm   |   6 +-
 gnu/packages/guile-xyz.scm |  32 ++-
 gnu/packages/guile.scm |   9 -
 gnu/packages/haskell-xyz.scm   |   7 +-
 gnu/packages/hyperledger.scm   | 126 +-
 gnu/packages/imagemagick.scm   |   8 +-
 gnu/packages/installers.scm|   4 +-
 gnu/packages/ipfs.scm  |   6 +-
 gnu/packages/java-compression.scm  |  59 +++--
 gnu/packages/java.scm  |   6 +-
 gnu/packages/libffcall.scm |   9 +-
 gnu/packages/libusb.scm|  41 
 gnu/packages/linux.scm |  92 +--
 gnu/packages/lisp.scm  |   4 +-
 gnu/packages/machine-learning.scm  |  43 +++-
 gnu/packages/mail.scm  |   9 +-
 gnu/packages/man.scm   |   4 +-
 gnu/packages/maths.scm | 209 
 gnu/packages/mingw.scm |   4 +-
 gnu/packages/mp3.scm   |   2 +-
 gnu/packages/mpi.scm   |   8 +-
 gnu/packages/music.scm |  42 +---
 gnu/packages/networking.scm|  64 ++---
 gnu/packages/nss.scm   |  24 +-
 gnu/packages/onc-rpc.scm   |   4 +-
 gnu/packages/password-utils.scm|  80 +-
 gnu/packages/patches/bluez-CVE-2020-0556.patch | 180 +++

01/01: Merge branch 'master' into core-updates

2020-03-10 Thread guix-commits

mbakke pushed a commit to branch core-updates
in repository guix.

commit 50b99c90c87642f664f9c9523a6e40fc8542ddcf
Merge: bda4b5e 21656ff
Author: Marius Bakke 
AuthorDate: Tue Mar 10 20:50:02 2020 +0100

Merge branch 'master' into core-updates

 Makefile.am|   8 +-
 build-aux/git-authenticate.scm |   6 +-
 build-aux/hydra/gnu-system.scm |   4 +-
 build-aux/hydra/guix-modular.scm   |   4 +-
 build-aux/run-system-tests.scm | 115 
 doc/contributing.texi  |  28 +-
 doc/fdl-1.3.texi   |   4 +-
 doc/guix.texi  |  32 +-
 etc/system-tests.scm   |  94 
 gnu/ci.scm | 125 +++--
 gnu/installer.scm  |  21 +
 gnu/installer/final.scm|  98 +++-
 gnu/installer/newt/final.scm   |  40 +-
 gnu/installer/newt/network.scm |  10 +-
 gnu/installer/newt/page.scm| 587 ++---
 gnu/installer/newt/partition.scm   |   8 +-
 gnu/installer/newt/user.scm|  64 ++-
 gnu/installer/newt/welcome.scm |  44 +-
 gnu/installer/steps.scm|  25 +-
 gnu/installer/tests.scm| 340 
 gnu/installer/utils.scm| 158 --
 gnu/local.mk   |  13 +-
 gnu/packages/admin.scm |   4 +-
 gnu/packages/assembly.scm  |   2 +-
 gnu/packages/audio.scm |  61 ++-
 gnu/packages/bioconductor.scm  |  24 +-
 gnu/packages/bioinformatics.scm|  90 +++-
 gnu/packages/ccache.scm|  23 +-
 gnu/packages/chemistry.scm |   5 +-
 gnu/packages/chromium.scm  |   4 +-
 gnu/packages/compression.scm   |  53 +-
 gnu/packages/coq.scm   |   3 +-
 gnu/packages/cpp.scm   |   2 +-
 gnu/packages/cran.scm  | 139 +++--
 gnu/packages/crates-io.scm |   4 +-
 gnu/packages/cups.scm  |   6 +-
 gnu/packages/databases.scm |  35 ++
 gnu/packages/debug.scm |  71 ++-
 gnu/packages/dictionaries.scm  |   2 +-
 gnu/packages/dns.scm   |   8 +-
 gnu/packages/education.scm |   6 +-
 gnu/packages/emacs-xyz.scm |  98 +++-
 gnu/packages/engineering.scm   |   2 +-
 gnu/packages/finance.scm   |   8 +-
 gnu/packages/fonts.scm |  47 +-
 gnu/packages/fontutils.scm | 101 ++--
 gnu/packages/freedesktop.scm   |   1 +
 gnu/packages/game-development.scm  |   2 +-
 gnu/packages/games.scm |   2 +-
 gnu/packages/geo.scm   |  64 ++-
 gnu/packages/gkrellm.scm   |   7 +-
 gnu/packages/gnome.scm | 153 --
 gnu/packages/gnuzilla.scm  |  12 +-
 gnu/packages/golang.scm|   2 +-
 gnu/packages/guile-xyz.scm |  50 +-
 gnu/packages/guile.scm |  27 +-
 gnu/packages/haskell-apps.scm  |   6 +-
 gnu/packages/idris.scm |   2 +-
 gnu/packages/image.scm |   4 +-
 gnu/packages/java.scm  |  36 +-
 gnu/packages/kde-multimedia.scm|   4 +-
 gnu/packages/kde-pim.scm   |  55 +-
 gnu/packages/kde-systemtools.scm   |  12 +-
 gnu/packages/kerberos.scm  |   2 +-
 gnu/packages/linux.scm |  35 +-
 gnu/packages/lisp-xyz.scm  | 109 +++-
 gnu/packages/machine-learning.scm  |  10 +-
 gnu/packages/mail.scm  |  12 +-
 gnu/packages/man.scm   |   4 +-
 gnu/packages/maths.scm |  50 +-
 gnu/packages/messaging.scm |   2 +-
 gnu/packages/music.scm |  60 ++-
 gnu/packages/networking.scm|   2 +-
 gnu/packages/ntp.scm   |   8 +-
 gnu/packages/package-management.scm|  10 +-
 ...i-Revert-Make-installation-properly-relo.patch} |   0
 gnu/packages/patches/anki-mpv-args.patch   |  42

01/01: Merge branch 'master' into core-updates

2020-03-04 Thread guix-commits

mbakke pushed a commit to branch core-updates
in repository guix.

commit ebb7cf9e21060105d9950dd5142c0eb918083666
Merge: 0b870f7 c2d7e80
Author: Marius Bakke 
AuthorDate: Wed Mar 4 23:16:17 2020 +0100

Merge branch 'master' into core-updates

 Makefile.am|2 +
 bootstrap  |2 +-
 build-aux/build-self.scm   |3 +-
 build-aux/git-authenticate.scm |8 +-
 doc/contributing.texi  |   62 +
 doc/guix.texi  |  145 +-
 doc/local.mk   |6 +-
 etc/copyright.el   |   34 +
 gnu/build/file-systems.scm |2 +
 gnu/build/linux-boot.scm   |4 +-
 gnu/build/marionette.scm   |8 +-
 gnu/installer.scm  |5 +-
 gnu/installer/parted.scm   |7 +-
 gnu/installer/steps.scm|1 +
 gnu/installer/utils.scm|   47 +-
 gnu/local.mk   |   18 +-
 gnu/packages/abduco.scm|5 +-
 gnu/packages/acct.scm  |3 +-
 gnu/packages/admin.scm |   77 +-
 gnu/packages/algebra.scm   |   34 +-
 gnu/packages/android.scm   |   83 +-
 gnu/packages/anthy.scm |2 +-
 gnu/packages/aspell.scm|5 +-
 gnu/packages/assembly.scm  |6 +-
 gnu/packages/audio.scm |   32 +-
 gnu/packages/autotools.scm |3 +-
 gnu/packages/aux-files/emacs/guix-emacs.el |5 +-
 gnu/packages/avr.scm   |   16 +-
 gnu/packages/backup.scm|2 +-
 gnu/packages/bdw-gc.scm|   10 +-
 gnu/packages/benchmark.scm |   31 +-
 gnu/packages/bioconductor.scm  |  161 +-
 gnu/packages/bioinformatics.scm|  246 +-
 gnu/packages/bittorrent.scm|4 +-
 gnu/packages/bootloaders.scm   |   15 +-
 gnu/packages/build-tools.scm   |6 +-
 gnu/packages/c.scm |6 +-
 gnu/packages/cedille.scm   |4 +-
 gnu/packages/certs.scm |6 +-
 gnu/packages/check.scm |6 +-
 gnu/packages/chicken.scm   |7 +-
 gnu/packages/chromium.scm  |   84 +-
 gnu/packages/compression.scm   |   47 +-
 gnu/packages/connman.scm   |7 +-
 gnu/packages/cpp.scm   |   74 +
 gnu/packages/cran.scm  | 1884 -
 gnu/packages/crates-io.scm | 7996 +---
 gnu/packages/crypto.scm|   28 +-
 gnu/packages/databases.scm |   47 +-
 gnu/packages/datamash.scm  |6 +-
 gnu/packages/dav.scm   |2 +-
 gnu/packages/debian.scm|4 +-
 gnu/packages/dictionaries.scm  |   59 +-
 gnu/packages/diffoscope.scm|6 +-
 gnu/packages/disk.scm  |   23 +-
 gnu/packages/distributed.scm   |8 +-
 gnu/packages/django.scm|8 +-
 gnu/packages/dns.scm   |  128 +-
 gnu/packages/docker.scm|6 +-
 gnu/packages/documentation.scm |   25 +
 gnu/packages/ebook.scm |2 +-
 gnu/packages/education.scm |   10 +-
 gnu/packages/efi.scm   |7 +-
 gnu/packages/elixir.scm|4 +-
 gnu/packages/emacs-xyz.scm |  417 +-
 gnu/packages/emacs.scm |   49 +-
 gnu/packages/embedded.scm  |2 +-
 gnu/packages/emulators.scm |  129 +-
 gnu/packages/enchant.scm   |4 +-
 gnu/packages/engineering.scm   |  319 +-
 gnu/packages/erlang.scm|6 +-
 gnu/packages/finance.scm   |8 +-
 gnu/packages/firmware.scm  |   16 +-
 gnu/packages/flashing-tools.scm|   10 +-
 gnu/packages/fltk.scm  |2 +-
 gnu/packages/fonts.scm |   57 +-
 gnu/packages/fontutils.s

01/01: Merge branch 'master' into core-updates

2020-02-14 Thread guix-commits

mbakke pushed a commit to branch core-updates
in repository guix.

commit 7edafc884c2a21258541b17a231051702c458263
Merge: 89da127 64fc4f3
Author: Marius Bakke 
AuthorDate: Fri Feb 14 19:05:45 2020 +0100

Merge branch 'master' into core-updates

 .mailmap   |1 +
 build-aux/git-authenticate.scm |4 +
 doc/guix.texi  |   29 +-
 etc/completion/bash/guix   |2 +-
 etc/news.scm   |   43 +-
 gnu/installer.scm  |7 +-
 gnu/installer/final.scm|   27 +-
 gnu/installer/newt/final.scm   |   21 +-
 gnu/local.mk   |   10 +-
 gnu/machine.scm|2 +-
 gnu/machine/digital-ocean.scm  |2 +-
 gnu/machine/ssh.scm|2 +-
 gnu/packages/admin.scm |   42 +-
 gnu/packages/aidc.scm  |   39 +
 gnu/packages/antivirus.scm |6 +-
 gnu/packages/backup.scm|9 +-
 gnu/packages/bioconductor.scm  |6 +-
 gnu/packages/bioinformatics.scm|   15 +-
 gnu/packages/boost.scm |4 +-
 gnu/packages/check.scm |   26 +
 gnu/packages/chicken.scm   |   68 +
 gnu/packages/chromium.scm  |9 +-
 gnu/packages/cran.scm  |   18 +-
 gnu/packages/crates-io.scm | 2516 ++--
 gnu/packages/crypto.scm|7 +-
 gnu/packages/cups.scm  |4 +-
 gnu/packages/databases.scm |4 +-
 gnu/packages/dictionaries.scm  |5 +-
 gnu/packages/diffoscope.scm|   74 +-
 gnu/packages/djvu.scm  |   54 +-
 gnu/packages/dns.scm   |1 -
 gnu/packages/docker.scm|   21 +-
 gnu/packages/dunst.scm |   14 +-
 gnu/packages/education.scm |  113 +-
 gnu/packages/elf.scm   |   24 +-
 gnu/packages/emacs-xyz.scm |  260 +-
 gnu/packages/file-systems.scm  |6 +-
 gnu/packages/finance.scm   |4 +-
 gnu/packages/fonts.scm |   22 +
 gnu/packages/fontutils.scm |2 +-
 gnu/packages/freedesktop.scm   |   17 +-
 gnu/packages/ftp.scm   |4 +-
 gnu/packages/games.scm |  443 ++-
 gnu/packages/gdb.scm   |   10 +
 gnu/packages/gimp.scm  |4 +-
 gnu/packages/gl.scm|   19 +
 gnu/packages/gnome-xyz.scm |   34 +
 gnu/packages/gnome.scm |   51 +-
 gnu/packages/gnunet.scm|2 +-
 gnu/packages/gnuzilla.scm  |   12 +-
 gnu/packages/golang.scm|  416 +-
 gnu/packages/gpodder.scm   |6 +-
 gnu/packages/graph.scm |   29 +
 gnu/packages/graphics.scm  |   13 +-
 gnu/packages/gstreamer.scm |   34 +
 gnu/packages/ham-radio.scm |   51 +-
 gnu/packages/haskell-xyz.scm   |  109 +
 gnu/packages/i2p.scm   |2 +-
 gnu/packages/kde-internet.scm  |2 +-
 gnu/packages/libreoffice.scm   |   34 +-
 gnu/packages/libusb.scm|   12 +-
 gnu/packages/linux.scm |   81 +-
 gnu/packages/lisp-xyz.scm  |  767 +++-
 gnu/packages/lisp.scm  |4 +-
 gnu/packages/lua.scm   |  159 +-
 gnu/packages/lxde.scm  |2 +-
 gnu/packages/lxqt.scm  |   10 +
 gnu/packages/mail.scm  |   11 +-
 gnu/packages/man.scm   |6 +-
 gnu/packages/maths.scm |6 +-
 gnu/packages/messaging.scm |2 +-
 gnu/packages/music.scm |   29 +-
 gnu/packages/musl.scm  |2 +-
 gnu/packages/nano.scm  |6 +-
 gnu/packages/networking.scm|   83 +
 gnu/packages/node.scm  |4 +
 gnu/packages/opencl.scm

01/01: Merge branch 'master' into core-updates

2020-01-14 Thread guix-commits

mbakke pushed a commit to branch core-updates
in repository guix.

commit 3cfe76bec06fbd8bb7e7cb3387866fefbcad674f
Merge: ec836b4 574a71a
Author: Marius Bakke 
AuthorDate: Wed Jan 15 00:09:46 2020 +0100

Merge branch 'master' into core-updates

 doc/build.scm  |   7 +-
 doc/htmlxref.cnf   |  45 +-
 gnu/installer/newt/final.scm   |   8 +-
 gnu/installer/newt/page.scm|  78 ++--
 gnu/local.mk   |   5 +-
 gnu/packages/audio.scm |  21 +-
 gnu/packages/certs.scm |   4 +-
 gnu/packages/check.scm |  13 +
 gnu/packages/chez.scm  |  13 +-
 gnu/packages/cmake.scm |  14 +-
 gnu/packages/crates-io.scm | 109 +++--
 gnu/packages/crypto.scm|  29 +-
 gnu/packages/databases.scm |  12 +-
 gnu/packages/disk.scm  |   2 +-
 gnu/packages/emacs-xyz.scm |  33 +-
 gnu/packages/entr.scm  |  10 +-
 gnu/packages/freedesktop.scm   |  29 +-
 gnu/packages/games.scm |  40 +-
 gnu/packages/geo.scm   | 125 +-
 gnu/packages/gnome.scm | 457 +
 gnu/packages/graphviz.scm  |   4 +-
 gnu/packages/gstreamer.scm |  11 +-
 gnu/packages/gtk.scm   |  10 +
 gnu/packages/guile-xyz.scm |  58 ++-
 gnu/packages/guile.scm |  29 +-
 gnu/packages/kde.scm   |   4 +-
 gnu/packages/linux.scm |  30 +-
 gnu/packages/lisp-xyz.scm  |  45 ++
 gnu/packages/maths.scm |  10 +-
 gnu/packages/messaging.scm |   7 +-
 gnu/packages/mpi.scm   |   3 +-
 gnu/packages/music.scm |   7 +-
 .../audacity-build-with-system-portaudio.patch |  16 +-
 .../patches/jsoncpp-fix-inverted-case.patch|  22 +
 gnu/packages/patches/spice-fix-test-armhf.patch|  19 +
 gnu/packages/patches/wavpack-CVE-2018-6767.patch   | 119 --
 gnu/packages/patches/wavpack-CVE-2018-7253.patch   |  29 --
 gnu/packages/patches/wavpack-CVE-2018-7254.patch   |  62 ---
 gnu/packages/popt.scm  |   9 +-
 gnu/packages/python-crypto.scm | 101 -
 gnu/packages/python-xyz.scm|  73 ++--
 gnu/packages/qt.scm|   4 +-
 gnu/packages/rsync.scm |   4 +-
 gnu/packages/serialization.scm |   1 +
 gnu/packages/spice.scm |   1 +
 gnu/packages/version-control.scm   |   8 +-
 gnu/services/databases.scm |   2 +-
 gnu/system.scm |   1 -
 guix/build/asdf-build-system.scm   |   9 +
 guix/deprecation.scm   |   8 +-
 guix/lint.scm  |   1 +
 nix/libstore/gc.cc |  18 +-
 nix/libutil/util.cc|  10 +-
 nix/libutil/util.hh|   6 +-
 54 files changed, 1231 insertions(+), 564 deletions(-)

diff --cc gnu/local.mk
index 4677c42,cb46ee7..62ea29c
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@@ -1455,11 -1458,7 +1457,8 @@@ dist_patch_DATA =  

%D%/packages/patches/vsearch-unbundle-cityhash.patch\
%D%/packages/patches/vte-CVE-2012-2738-pt1.patch\
%D%/packages/patches/vte-CVE-2012-2738-pt2.patch\
-   %D%/packages/patches/wavpack-CVE-2018-6767.patch\
-   %D%/packages/patches/wavpack-CVE-2018-7253.patch\
-   %D%/packages/patches/wavpack-CVE-2018-7254.patch\
%D%/packages/patches/weasyprint-library-paths.patch \
 +  %D%/packages/patches/webkitgtk-icu-65.patch \
%D%/packages/patches/websocketpp-fix-for-boost-1.70.patch   \
%D%/packages/patches/wicd-bitrate-none-fix.patch\
%D%/packages/patches/wicd-get-selected-profile-fix.patch\
diff --cc gnu/packages/cmake.scm
index 556e98a,2d2827f..e24b6de
--- a/gnu/packages/cmake.scm
+++ b/gnu/packages/cmake.scm
@@@ -163,7 -159,7 +164,18 @@@
  (native-search-paths
   (list (search-path-specification
  (variable "CMAKE_PREFIX_PATH")
--(files '("")
++(files '("")))
++   ;; "cmake-curl-certificates.patch" changes CMake to honor 
'SSL_CERT_DIR'
++   ;; an

01/01: Merge branch 'master' into core-updates

2020-01-11 Thread guix-commits

mbakke pushed a commit to branch core-updates
in repository guix.

commit b7bf02a418e946b610ef68e8c5131f2350835956
Merge: 233c1be 13efb24
Author: Marius Bakke 
AuthorDate: Sat Jan 11 22:38:24 2020 +0100

Merge branch 'master' into core-updates

 HACKING|   56 +-
 build-aux/git-authenticate.scm |4 +-
 doc/contributing.texi  |  178 +-
 doc/guix.texi  |  170 +-
 gnu/bootloader/extlinux.scm|4 +-
 gnu/bootloader/grub.scm|   10 +-
 gnu/build/activation.scm   |   26 +-
 gnu/build/file-systems.scm |   62 +-
 gnu/installer.scm  |6 +-
 gnu/installer/newt/partition.scm   |3 +-
 gnu/installer/parted.scm   |   17 +-
 gnu/local.mk   |   31 +-
 gnu/packages.scm   |6 +-
 gnu/packages/abiword.scm   |8 +-
 gnu/packages/admin.scm |   64 +-
 gnu/packages/algebra.scm   |4 +-
 gnu/packages/assembly.scm  |  105 +-
 gnu/packages/astronomy.scm |6 +-
 gnu/packages/audio.scm |   41 +-
 gnu/packages/bioinformatics.scm|  326 +-
 gnu/packages/bittorrent.scm|6 +-
 gnu/packages/bootloaders.scm   |   62 +-
 gnu/packages/cdrom.scm |   18 +-
 gnu/packages/check.scm |   34 +-
 gnu/packages/chromium.scm  |   57 +-
 gnu/packages/clojure.scm   |   25 +
 gnu/packages/cluster.scm   |4 +-
 gnu/packages/code.scm  |6 +-
 gnu/packages/commencement.scm  |4 +-
 gnu/packages/compression.scm   |6 +-
 gnu/packages/coq.scm   |  170 +-
 gnu/packages/cran.scm  |  255 +-
 gnu/packages/crates-io.scm | 8494 ++--
 gnu/packages/crypto.scm|   10 +
 gnu/packages/cups.scm  |   11 +-
 gnu/packages/databases.scm |   52 +-
 gnu/packages/disk.scm  |6 +-
 gnu/packages/electronics.scm   |   14 +-
 gnu/packages/emacs-xyz.scm |  420 +-
 gnu/packages/emulators.scm |   47 +
 gnu/packages/engineering.scm   |   41 +-
 gnu/packages/file-systems.scm  |   76 +
 gnu/packages/finance.scm   |  114 +-
 gnu/packages/firmware.scm  |   10 +-
 gnu/packages/fonts.scm |   42 +-
 gnu/packages/freedesktop.scm   |4 +-
 gnu/packages/game-development.scm  |  145 +-
 gnu/packages/games.scm |   49 +-
 gnu/packages/geo.scm   |9 +-
 gnu/packages/gl.scm|   50 +-
 gnu/packages/glib.scm  |1 +
 gnu/packages/gnome.scm |  270 +-
 gnu/packages/gnucash.scm   |   27 +-
 gnu/packages/gnuzilla.scm  |   14 +-
 gnu/packages/golang.scm|   90 +-
 gnu/packages/gprolog.scm   |   68 -
 gnu/packages/gstreamer.scm |   38 +-
 gnu/packages/gtk.scm   |   16 +-
 gnu/packages/guile-xyz.scm |   68 +-
 gnu/packages/guile.scm |4 +-
 gnu/packages/ham-radio.scm |   13 +-
 gnu/packages/hardware.scm  |6 +-
 gnu/packages/haskell-apps.scm  |5 +-
 gnu/packages/haskell-xyz.scm   |  103 +
 gnu/packages/ibus.scm  |   78 +-
 gnu/packages/image.scm |3 +-
 gnu/packages/imagemagick.scm   |4 +-
 gnu/packages/irc.scm   |   10 +-
 gnu/packages/javascript.scm|   48 -
 gnu/packages/kde.scm   |7 +-
 gnu/packages/language.scm  |   25 +
 gnu/packages/lean.scm  |   65 +
 gnu/packages/license.scm   |   13 +-
 gnu/packages/linux.scm |   68 +-
 gnu/packages/lisp-xyz.scm  | 1957 -
 gnu/packages/lisp.scm  |  225 +-
 gnu/packages/lua.scm

01/01: Merge branch 'master' into core-updates

2019-10-07 Thread guix-commits

civodul pushed a commit to branch core-updates
in repository guix.

commit 4d8d2fbaf3025337f7feff627282447db82a99d5
Merge: e08902d fa984fa
Author: Ludovic Courtès 
Date:   Mon Oct 7 17:06:13 2019 +0200

Merge branch 'master' into core-updates

 gnu/local.mk   |   1 -
 gnu/packages/audio.scm |  42 +++---
 gnu/packages/bioconductor.scm  |  13 +-
 gnu/packages/bioinformatics.scm|  13 +-
 gnu/packages/bittorrent.scm|  13 +-
 gnu/packages/cran.scm  |  49 +++
 gnu/packages/emacs-xyz.scm |  75 ---
 gnu/packages/java.scm  |  15 ++-
 gnu/packages/linux.scm |   8 +-
 gnu/packages/lisp.scm  | 178 -
 gnu/packages/openldap.scm  |   6 +-
 gnu/packages/patches/aria2-CVE-2019-3500.patch |  55 
 gnu/packages/statistics.scm|   4 +-
 13 files changed, 315 insertions(+), 157 deletions(-)

diff --cc gnu/local.mk
index 898d22f,ffe697c..39b8e00
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@@ -693,9 -695,7 +693,8 @@@ dist_patch_DATA =  

%D%/packages/patches/antlr3-3_1-fix-java8-compilation.patch \
%D%/packages/patches/antlr3-3_3-fix-java8-compilation.patch \
%D%/packages/patches/apr-skip-getservbyname-test.patch  \
-   %D%/packages/patches/aria2-CVE-2019-3500.patch  \
%D%/packages/patches/aspell-default-dict-dir.patch  \
 +  %D%/packages/patches/aspell-gcc-compat.patch\
%D%/packages/patches/ath9k-htc-firmware-binutils.patch  \
%D%/packages/patches/ath9k-htc-firmware-gcc.patch   \
%D%/packages/patches/ath9k-htc-firmware-objcopy.patch   \

01/01: Merge branch 'master' into core-updates

2019-10-06 Thread guix-commits

rekado pushed a commit to branch core-updates
in repository guix.

commit e08902d3cbb307e1523485becbbdaf9aed56ac4a
Merge: 1714edc f587024
Author: Ricardo Wurmus 
Date:   Sun Oct 6 22:02:20 2019 +0200

Merge branch 'master' into core-updates

 Makefile.am| 5 +
 doc/guix.texi  |26 +-
 gnu/local.mk   | 1 +
 gnu/packages/admin.scm |   115 +-
 .../aux-files/linux-libre/5.3-arm-veyron.conf  |  4997 +
 gnu/packages/aux-files/linux-libre/5.3-arm.conf|  9316 +
 gnu/packages/aux-files/linux-libre/5.3-arm64.conf  |  9246 +
 gnu/packages/aux-files/linux-libre/5.3-i686.conf   | 10271 +++
 gnu/packages/aux-files/linux-libre/5.3-x86_64.conf | 10227 ++
 gnu/packages/axoloti.scm   |35 +-
 gnu/packages/bioinformatics.scm| 7 +
 gnu/packages/conky.scm | 6 +-
 gnu/packages/cran.scm  |69 +-
 gnu/packages/crates-io.scm |41 +-
 gnu/packages/cryptsetup.scm|52 +-
 gnu/packages/dav.scm   |11 +-
 gnu/packages/dictionaries.scm  | 4 +-
 gnu/packages/emacs-xyz.scm |   108 +-
 gnu/packages/enlightenment.scm |   124 +-
 gnu/packages/finance.scm   | 5 +-
 gnu/packages/games.scm |37 +-
 gnu/packages/gl.scm| 3 +-
 gnu/packages/graphics.scm  |18 +-
 gnu/packages/guile-xyz.scm | 6 +-
 gnu/packages/java.scm  |13 +-
 gnu/packages/license.scm   |49 +-
 gnu/packages/linux.scm |51 +-
 gnu/packages/lisp.scm  |   234 +-
 gnu/packages/lua.scm   | 8 +-
 gnu/packages/machine-learning.scm  |   130 +
 gnu/packages/mail.scm  | 8 +-
 gnu/packages/messaging.scm |26 +-
 gnu/packages/monitoring.scm| 4 +-
 gnu/packages/music.scm |40 +
 gnu/packages/nano.scm  | 4 +-
 gnu/packages/networking.scm|63 +-
 gnu/packages/ocaml.scm | 8 +-
 gnu/packages/perl-check.scm| 4 +-
 gnu/packages/perl.scm  |16 +-
 gnu/packages/plotutils.scm | 4 +-
 gnu/packages/python-check.scm  | 8 +-
 gnu/packages/python-xyz.scm|60 +-
 gnu/packages/screen.scm| 4 +-
 gnu/packages/serialization.scm |44 +-
 gnu/packages/statistics.scm|17 +-
 gnu/packages/sync.scm  | 4 +-
 gnu/packages/tigervnc.scm  |   232 +
 gnu/packages/tls.scm   | 4 +-
 gnu/packages/video.scm | 4 +-
 gnu/packages/web-browsers.scm  |46 +-
 gnu/packages/web.scm   |17 +-
 gnu/packages/wm.scm|33 +-
 gnu/packages/xfce.scm  |   802 +-
 gnu/packages/xml.scm   | 4 +-
 gnu/services/base.scm  |   185 +-
 gnu/services/shepherd.scm  |77 +-
 gnu/services/web.scm   | 2 +-
 gnu/system.scm | 7 +-
 guix/gexp.scm  |49 +-
 guix/import/crate.scm  |29 +-
 guix/inferior.scm  | 4 +-
 guix/scripts/environment.scm   |19 +-
 guix/scripts/import/crate.scm  |36 +-
 guix/scripts/pull.scm  | 2 +-
 tests/guix-environment-container.sh| 5 +
 65 files changed, 46448 insertions(+), 638 deletions(-)

diff --cc gnu/packages/java.scm
index fe745a5,3b74049..495e6bb
--- a/gnu/packages/java.scm
+++ b/gnu/packages/java.scm
@@@ -201,12 -193,8 +204,13 @@@ language."
  (inputs
   `(("classpath" ,classpath-bootstrap)
 ("jikes" ,jikes)
+("libffi" ,libffi)
 ("zlib" ,zlib)))
 +;; When built with a recent GCC and glibc the configure step of icedtea-6
 +;; fails with an invalid instruction error.
 +(native-inputs
 + `(("gcc" ,gcc-5)
 +   ("libc" ,glibc-2.28)))
  (home-page "http://jamvm.

01/01: Merge branch 'master' into core-updates

2019-10-01 Thread guix-commits

civodul pushed a commit to branch core-updates
in repository guix.

commit 0cf2b6f2dbcd299f7a4b7a563cf34ae5de154b15
Merge: 8d564b8 717b6ba
Author: Ludovic Courtès 
Date:   Tue Oct 1 11:49:17 2019 +0200

Merge branch 'master' into core-updates

 doc/guix.texi  |  51 ---
 gnu/local.mk   |   3 +-
 gnu/packages/admin.scm |   7 +-
 gnu/packages/algebra.scm   |  10 +-
 gnu/packages/bioinformatics.scm|  23 ++--
 gnu/packages/cpp.scm   |   4 +-
 gnu/packages/cran.scm  |  88 ++--
 gnu/packages/emacs-xyz.scm | 147 -
 gnu/packages/embedded.scm  |  26 ++--
 gnu/packages/emulators.scm |   8 +-
 gnu/packages/games.scm |   4 +-
 gnu/packages/gnome.scm |  35 +++--
 gnu/packages/gnupg.scm |  10 +-
 gnu/packages/gpodder.scm   |   8 +-
 gnu/packages/gps.scm   |   6 +-
 gnu/packages/guile-xyz.scm |  29 ++--
 gnu/packages/guile.scm |  17 ++-
 gnu/packages/java.scm  |  66 -
 gnu/packages/linux.scm |  48 +++
 gnu/packages/lisp.scm  |   4 +-
 gnu/packages/mail.scm  |   5 +-
 gnu/packages/markup.scm|  19 +--
 gnu/packages/maths.scm |  26 ++--
 gnu/packages/messaging.scm |   4 +-
 gnu/packages/networking.scm|   4 +-
 gnu/packages/patches/abcl-fix-build-xml.patch  |  50 +++
 gnu/packages/patches/dealii-mpi-deprecations.patch |  28 
 gnu/packages/patches/mame-rapidjson-fix.patch  |  37 --
 gnu/packages/pdf.scm   |  44 +-
 gnu/packages/perl.scm  |   5 +-
 gnu/packages/ssh.scm   |   7 +-
 gnu/packages/statistics.scm|  35 ++---
 gnu/packages/textutils.scm |   8 +-
 gnu/packages/tls.scm   |   5 +-
 gnu/packages/video.scm |   4 +-
 gnu/packages/virtualization.scm|   7 +-
 gnu/packages/xdisorg.scm   |  42 ++
 gnu/packages/xorg.scm  |   5 +-
 guix/build/compile.scm |   9 +-
 guix/scripts/offload.scm   |   3 +-
 guix/scripts/pull.scm  |   2 +-
 guix/ui.scm|  40 --
 nix/libstore/build.cc  |   2 +-
 43 files changed, 642 insertions(+), 343 deletions(-)

diff --cc gnu/local.mk
index 18a25e6,d056a25..9f8ce84
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@@ -674,8 -674,11 +674,9 @@@ dist_patch_DATA = 

%D%/packages/patches/a2ps-CVE-2001-1593.patch   \
%D%/packages/patches/a2ps-CVE-2014-0466.patch   \
%D%/packages/patches/a2ps-CVE-2015-8107.patch   \
+   %D%/packages/patches/abcl-fix-build-xml.patch   \
%D%/packages/patches/abiword-explictly-cast-bools.patch \
%D%/packages/patches/abiword-black-drawing-with-gtk322.patch\
 -  %D%/packages/patches/acl-fix-perl-regex.patch   \
 -  %D%/packages/patches/acl-hurd-path-max.patch\
%D%/packages/patches/adb-add-libraries.patch\
%D%/packages/patches/aegis-constness-error.patch\
%D%/packages/patches/aegis-perl-tempdir1.patch  \
@@@ -762,9 -764,7 +763,8 @@@
%D%/packages/patches/cvs-CVE-2017-12836.patch   \
%D%/packages/patches/darkice-workaround-fpermissive-error.patch \
%D%/packages/patches/dbus-helper-search-path.patch  \
 -  %D%/packages/patches/dbus-CVE-2019-12749.patch  \
 +  %D%/packages/patches/dbus-c++-gcc-compat.patch  \
 +  %D%/packages/patches/dbus-c++-threading-mutex.patch \
-   %D%/packages/patches/dealii-mpi-deprecations.patch  \
%D%/packages/patches/debops-constants-for-external-program-names.patch \
%D%/packages/patches/debops-debops-defaults-fall-back-to-less.patch \
%D%/packages/patches/deja-dup-use-ref-keyword-for-iter.patch\

01/01: Merge branch 'master' into core-updates

2019-09-27 Thread guix-commits

mbakke pushed a commit to branch core-updates
in repository guix.

commit e7f62a41b245ca30404c54f3f77930336627c2f7
Merge: 1fdab9d b48eb1e
Author: Marius Bakke 
Date:   Fri Sep 27 19:11:27 2019 +0200

Merge branch 'master' into core-updates

 doc/build.scm  |   59 +-
 doc/guix.texi  |  107 +-
 gnu/build/linux-boot.scm   |5 +-
 gnu/build/linux-initrd.scm |4 +-
 gnu/build/shepherd.scm |6 +-
 gnu/installer/newt/partition.scm   |9 +-
 gnu/installer/parted.scm   |   48 +-
 gnu/local.mk   |   19 +-
 gnu/packages/admin.scm |   98 ++
 gnu/packages/bootloaders.scm   |9 +-
 gnu/packages/cluster.scm   |   10 +-
 gnu/packages/compression.scm   |   50 +-
 gnu/packages/cran.scm  |   27 +
 gnu/packages/disk.scm  |5 +-
 gnu/packages/distributed.scm   |   95 ++
 gnu/packages/emacs-xyz.scm |  616 ++---
 gnu/packages/embedded.scm  |   81 +-
 gnu/packages/game-development.scm  |2 +-
 gnu/packages/geo.scm   |4 +-
 gnu/packages/gl.scm|   80 ++
 gnu/packages/glib.scm  |   35 +
 gnu/packages/graphics.scm  |   92 +-
 gnu/packages/gstreamer.scm |5 +
 gnu/packages/guile-xyz.scm |6 +-
 gnu/packages/haskell-xyz.scm   |   37 +
 gnu/packages/idris.scm |9 +-
 gnu/packages/image-processing.scm  |4 +
 gnu/packages/image.scm |  111 +-
 gnu/packages/license.scm   |   10 +-
 gnu/packages/linux.scm |   39 +-
 gnu/packages/maths.scm |6 +-
 gnu/packages/music.scm |   17 +-
 gnu/packages/networking.scm|8 +-
 gnu/packages/patches/beets-python-3.7-fix.patch|   57 -
 ...bops-constants-for-external-program-names.patch |  276 
 .../debops-debops-defaults-fall-back-to-less.patch |   45 +
 gnu/packages/patches/freeimage-CVE-2015-0852.patch |  129 --
 gnu/packages/patches/freeimage-CVE-2016-5684.patch |   34 -
 .../patches/freeimage-fix-build-with-gcc-5.patch   | 1453 
 gnu/packages/patches/freeimage-unbundle.patch  |  167 ++-
 .../patches/glm-restore-install-target.patch   |  574 
 gnu/packages/patches/idris-test-no-node.patch  |   61 -
 gnu/packages/patches/ilmbase-fix-tests.patch   |   12 +-
 .../patches/ilmbase-openexr-pkg-config.patch   |   40 +
 gnu/packages/patches/p11-kit-jks-timestamps.patch  |   42 -
 gnu/packages/plotutils.scm |6 +-
 gnu/packages/pretty-print.scm  |4 +-
 gnu/packages/python-xyz.scm|   29 +-
 gnu/packages/regex.scm |4 +-
 gnu/packages/tbb.scm   |   11 +
 gnu/packages/texinfo.scm   |   14 +-
 gnu/packages/tls.scm   |   13 +-
 gnu/packages/video.scm |   69 +-
 gnu/packages/virtualization.scm|4 +-
 gnu/packages/vulkan.scm|7 +-
 gnu/packages/web-browsers.scm  |7 +-
 gnu/packages/web.scm   |  110 +-
 gnu/packages/webkit.scm|   73 +-
 gnu/packages/wm.scm|8 +-
 gnu/packages/xdisorg.scm   |   12 +-
 gnu/packages/xml.scm   |4 +-
 gnu/packages/xorg.scm  |   21 +-
 gnu/services/guix.scm  |  212 +++
 gnu/tests/guix.scm |  173 +++
 guix/colors.scm|   18 +-
 guix/scripts/download.scm  |   15 +
 guix/scripts/package.scm   |   21 +
 guix/scripts/pull.scm  |2 +-
 guix/self.scm  |6 +-
 tests/guix-package.sh  |6 +-
 70 files changed, 3083 insertions(+), 2369 deletions(-)

diff --cc gnu/local.mk
index bee5b70,a6fe439..9bd1e88
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@@ -760,9 -763,10 +762,11 @@@ dist_patch_DATA =

%D%/packages/patches/cvs-CVE-2017-12836.patch   \
%D%/packages/patches/darkice-workaround-fpermissive-error.patch \

01/01: Merge branch 'master' into core-updates

2019-09-24 Thread guix-commits

civodul pushed a commit to branch core-updates
in repository guix.

commit 11da634a6e64afa2904542e2174aa2a185f9ac3a
Merge: e5efdbc 7b3f56f
Author: Ludovic Courtès 
Date:   Tue Sep 24 10:11:38 2019 +0200

Merge branch 'master' into core-updates

 .dir-locals.el |   1 +
 .gitignore |  31 +-
 .guix-channel  |   5 +
 Makefile.am|  12 +-
 bootstrap  |  12 +-
 doc/guix-cookbook.texi | 821 +
 doc/guix.texi  | 180 -
 doc/local.mk   |   9 +-
 etc/news.scm   |  30 +
 gnu/installer/newt/partition.scm   |   6 +-
 gnu/local.mk   |   4 +-
 gnu/packages/admin.scm |  64 +-
 gnu/packages/android.scm   |  58 ++
 gnu/packages/audio.scm |   2 +-
 gnu/packages/aux-files/linux-libre/4.19-arm.conf   |  39 +-
 gnu/packages/aux-files/linux-libre/4.19-arm64.conf |  43 +-
 gnu/packages/aux-files/linux-libre/4.19-i686.conf  |  35 +-
 .../aux-files/linux-libre/4.19-x86_64.conf |  35 +-
 gnu/packages/aux-files/linux-libre/5.2-arm.conf|  32 +-
 gnu/packages/aux-files/linux-libre/5.2-arm64.conf  |  42 +-
 gnu/packages/aux-files/linux-libre/5.2-i686.conf   |  28 +-
 gnu/packages/aux-files/linux-libre/5.2-x86_64.conf |  28 +-
 gnu/packages/ci.scm|   6 +-
 gnu/packages/crates-io.scm | 638 +++-
 gnu/packages/datamash.scm  |   6 +-
 gnu/packages/diffoscope.scm| 279 +++
 gnu/packages/dns.scm   |   8 +-
 gnu/packages/elixir.scm|  27 +-
 gnu/packages/emacs-xyz.scm | 572 +-
 gnu/packages/enchant.scm   |   4 +-
 gnu/packages/engineering.scm   | 217 ++
 gnu/packages/enlightenment.scm |   4 +-
 gnu/packages/gdb.scm   |   6 +-
 gnu/packages/gnome.scm |   4 +-
 gnu/packages/graphics.scm  |  47 ++
 gnu/packages/guile-xyz.scm |  76 +-
 gnu/packages/haskell-xyz.scm   |   2 +-
 gnu/packages/javascript.scm|   4 +-
 gnu/packages/jupyter.scm   | 189 +
 gnu/packages/libevent.scm  |   4 +-
 gnu/packages/linux.scm |  12 +-
 gnu/packages/lisp.scm  | 434 ++-
 gnu/packages/llvm.scm  |  19 +-
 gnu/packages/mail.scm  |  10 +-
 gnu/packages/maths.scm |   7 +-
 gnu/packages/messaging.scm |   6 +-
 gnu/packages/mpd.scm   |   4 +-
 gnu/packages/node.scm  |   1 -
 gnu/packages/package-management.scm| 187 +
 gnu/packages/parallel.scm  |   4 +-
 gnu/packages/patches/emacs-unpackaged-req.patch|  24 -
 gnu/packages/patches/enjarify-setup-py.patch   |  19 +
 .../python-slugify-depend-on-unidecode.patch   |   4 +-
 gnu/packages/perl.scm  |   6 +-
 gnu/packages/python-crypto.scm |   6 +-
 gnu/packages/python-web.scm|  19 +-
 gnu/packages/python-xyz.scm| 139 +++-
 gnu/packages/qt.scm| 174 +
 gnu/packages/samba.scm |   4 +-
 gnu/packages/scheme.scm|   4 +-
 gnu/packages/serialization.scm |  33 +-
 gnu/packages/speech.scm| 237 ++
 gnu/packages/sphinx.scm|   2 +-
 gnu/packages/statistics.scm|   2 +-
 gnu/packages/sync.scm  |   4 +-
 gnu/packages/syncthing.scm |   2 +-
 gnu/packages/telephony.scm |   2 +-
 gnu/packages/terminals.scm |   9 +-
 gnu/packages/tex.scm   | 451 +--
 gnu/packages/text-editors.scm  |   2 +-
 gnu/packages/tor.scm   |   4 +-
 gnu/packages/usb-modeswitch.scm|   2 +-
 gnu/packages/video.scm |   9 +-
 gnu/packages/web-browsers.scm  |  43 +-
 gnu/packages/web.scm   |  40 +
 gnu/packages/xdisorg.scm   |  34 +-
 gnu/packages/xml.scm

01/01: Merge branch 'master' into core-updates

2019-09-17 Thread guix-commits

civodul pushed a commit to branch core-updates
in repository guix.

commit 9ff87bb99614923fa3336ab4bbf22e3444709b48
Merge: ae71bef 9e8e252
Author: Ludovic Courtès 
Date:   Tue Sep 17 16:17:20 2019 +0200

Merge branch 'master' into core-updates

 Makefile.am|   2 +
 build-aux/pre-inst-env.in  |  14 +-
 config-daemon.ac   |  11 -
 doc/build.scm  |  32 +-
 doc/contributing.texi  |  16 +-
 doc/guix.texi  | 713 +++--
 etc/guix-daemon.cil.in |   4 -
 gnu/build/linux-container.scm  |   7 +-
 gnu/build/shepherd.scm |   8 +-
 gnu/local.mk   |   2 +-
 gnu/packages/admin.scm |   4 +-
 gnu/packages/algebra.scm   |   4 +-
 gnu/packages/audio.scm |  20 +-
 gnu/packages/authentication.scm|  41 ++
 gnu/packages/bioconductor.scm  | 615 +-
 gnu/packages/bioinformatics.scm|  32 +-
 gnu/packages/check.scm |  12 +-
 gnu/packages/cluster.scm   |  35 +
 gnu/packages/cmake.scm |  12 +
 gnu/packages/cran.scm  | 476 --
 gnu/packages/crates-io.scm |   4 +-
 gnu/packages/cups.scm  |   4 +-
 gnu/packages/dictionaries.scm  |   6 +-
 gnu/packages/education.scm | 102 ++-
 gnu/packages/emacs-xyz.scm | 170 +++--
 gnu/packages/emulators.scm |   8 +-
 gnu/packages/engineering.scm   |  69 ++
 gnu/packages/finance.scm   |  31 +-
 gnu/packages/freedesktop.scm   |   8 +-
 gnu/packages/game-development.scm  |  10 +
 gnu/packages/games.scm |  19 +-
 gnu/packages/gnome.scm |  72 ++-
 gnu/packages/gnupg.scm |  32 +-
 gnu/packages/graph.scm |   4 +-
 gnu/packages/graphics.scm  |  41 ++
 gnu/packages/guile-xyz.scm |  28 +-
 gnu/packages/guile.scm |  12 +-
 gnu/packages/haskell-apps.scm  |  18 +-
 gnu/packages/haskell-xyz.scm   |  37 +-
 gnu/packages/haskell.scm   |   8 +-
 gnu/packages/image.scm |  73 +++
 gnu/packages/irc.scm   |  20 +-
 gnu/packages/javascript.scm| 139 ++--
 gnu/packages/kde.scm   |  32 +-
 gnu/packages/language.scm  | 481 +-
 gnu/packages/linux.scm |  40 +-
 gnu/packages/lisp.scm  |  73 +++
 gnu/packages/lua.scm   |  66 +-
 gnu/packages/lxqt.scm  |   3 +-
 gnu/packages/maths.scm |  43 +-
 gnu/packages/mes.scm   |  31 +-
 gnu/packages/music.scm |  69 +-
 gnu/packages/networking.scm|   8 +-
 gnu/packages/ntp.scm   |   8 +-
 gnu/packages/ocr.scm   |  75 +++
 gnu/packages/package-management.scm| 102 ++-
 gnu/packages/patches/cmake-curl-certificates.patch |  40 ++
 gnu/packages/patches/tipp10-fix-compiling.patch|   3 +-
 gnu/packages/patches/weechat-python.patch  |  40 --
 gnu/packages/perl-compression.scm  |   5 +-
 gnu/packages/python-check.scm  |  23 +-
 gnu/packages/python-xyz.scm| 213 --
 gnu/packages/python.scm|   6 +-
 gnu/packages/ruby.scm  |  30 +
 gnu/packages/shellutils.scm| 103 ++-
 gnu/packages/sphinx.scm|  21 +-
 gnu/packages/statistics.scm|  36 +-
 gnu/packages/suckless.scm  |  28 +
 gnu/packages/sync.scm  |   4 +-
 gnu/packages/terminals.scm |   7 +-
 gnu/packages/tex.scm   |   9 +-
 gnu/packages/textutils.scm |  51 +-
 gnu/packages/tls.scm   |  19 +
 gnu/packages/video.scm |   4 +-
 gnu/packages/vim.scm   |  13 +-
 gnu/packages/virtualization.scm|  17 +-
 gnu/packages/vpn.scm

01/01: Merge branch 'master' into core-updates

2019-09-06 Thread guix-commits

mhw pushed a commit to branch core-updates
in repository guix.

commit 65542a8852759f35e19959149ac92297c8b54be5
Merge: bc60349 f66aee3
Author: Mark H Weaver 
Date:   Fri Sep 6 20:46:00 2019 -0400

Merge branch 'master' into core-updates

 Makefile.am| 3 +
 README |36 +-
 doc/build.scm  |   115 +-
 doc/guix.texi  |   100 +-
 etc/guix-install.sh|11 +
 gnu/bootloader.scm |36 +-
 gnu/local.mk   | 2 -
 gnu/packages/admin.scm | 4 +-
 gnu/packages/agda.scm  | 2 +-
 gnu/packages/audio.scm | 4 +-
 .../aux-files/chromium/master-preferences.json | 3 -
 gnu/packages/aux-files/linux-libre/5.2-arm64.conf  | 2 +-
 gnu/packages/base.scm  | 4 +-
 gnu/packages/bioconductor.scm  |   246 +-
 gnu/packages/bioinformatics.scm|88 +-
 gnu/packages/bootloaders.scm   | 6 +-
 gnu/packages/cdrom.scm |12 +-
 gnu/packages/cedille.scm   | 1 +
 gnu/packages/commencement.scm  |11 +-
 gnu/packages/conky.scm | 6 +-
 gnu/packages/cran.scm  |   212 +-
 gnu/packages/crates-io.scm |  1400 ++-
 gnu/packages/cups.scm  |71 +-
 gnu/packages/databases.scm | 4 +-
 gnu/packages/dictionaries.scm  | 4 +-
 gnu/packages/docker.scm|46 +-
 gnu/packages/education.scm | 4 +-
 gnu/packages/emacs-xyz.scm |   553 +-
 gnu/packages/emacs.scm | 8 +-
 gnu/packages/emulators.scm |16 +-
 gnu/packages/engineering.scm   |40 +-
 gnu/packages/enlightenment.scm | 4 +-
 gnu/packages/games.scm | 1 +
 gnu/packages/ghostscript.scm   | 2 +-
 gnu/packages/gnome.scm |53 +-
 gnu/packages/gnucash.scm   |24 +-
 gnu/packages/gnuzilla.scm  | 4 +-
 gnu/packages/golang.scm|66 +-
 gnu/packages/gps.scm   | 4 +-
 gnu/packages/graphics.scm  | 2 +-
 gnu/packages/guile-wm.scm  | 4 +-
 gnu/packages/guile-xyz.scm | 9 +-
 gnu/packages/haskell-apps.scm  |   313 +-
 gnu/packages/haskell-check.scm |27 +-
 gnu/packages/haskell-web.scm   |54 +
 gnu/packages/haskell-xyz.scm   | 11722 ++-
 gnu/packages/haskell.scm   | 11292 +-
 gnu/packages/idris.scm | 2 +-
 gnu/packages/image.scm |85 +-
 gnu/packages/julia.scm | 4 +
 gnu/packages/libreoffice.scm   |11 +-
 gnu/packages/libusb.scm|16 +-
 gnu/packages/linux.scm |54 +-
 gnu/packages/lisp.scm  |   161 +-
 gnu/packages/mail.scm  | 4 +-
 gnu/packages/maths.scm |38 +-
 gnu/packages/mp3.scm   | 4 +-
 gnu/packages/music.scm |54 +-
 gnu/packages/ocaml.scm |   257 +-
 gnu/packages/package-management.scm|11 +-
 .../patches/twinkle-include-qregexpvalidator.patch |   123 -
 .../patches/xfce4-session-fix-xflock4.patch|31 -
 gnu/packages/photo.scm | 4 +-
 gnu/packages/php.scm   | 2 +-
 gnu/packages/python-xyz.scm|23 +-
 gnu/packages/qt.scm| 6 +
 gnu/packages/rust.scm  |19 +-
 gnu/packages/samba.scm |12 +-
 gnu/packages/statistics.scm|22 +-
 gnu/packages/sync.scm  |10 +-
 gnu/packages/syncthing.scm | 6 +-
 gnu/packages/telephony.scm |80 +-
 gnu/packages/terminals.scm | 4 +-
 gnu/packages/tex.scm   |   394 +-
 gnu/packages/textutils.scm |18 +-
 gnu/pack

01/01: Merge branch 'master' into core-updates

2019-08-29 Thread guix-commits

mhw pushed a commit to branch core-updates
in repository guix.

commit 0481289cbccba2646bf654f0ae49ac9c45602d5d
Merge: c55fae4 9fbf4d2
Author: Mark H Weaver 
Date:   Thu Aug 29 17:19:18 2019 -0400

Merge branch 'master' into core-updates

 Makefile.am|   33 +
 doc/guix.texi  |   75 +-
 gnu/build/accounts.scm |2 +-
 gnu/build/cross-toolchain.scm  |6 +-
 gnu/ci.scm |8 +-
 gnu/installer.scm  |   21 +-
 gnu/installer/newt/page.scm|9 +-
 gnu/installer/newt/user.scm|7 +-
 gnu/installer/newt/wifi.scm|4 +-
 gnu/local.mk   |8 +-
 gnu/packages/agda.scm  |   46 +
 gnu/packages/astronomy.scm |4 +-
 gnu/packages/audio.scm |9 +-
 gnu/packages/bittorrent.scm|8 +-
 gnu/packages/cedille.scm   |  124 +
 gnu/packages/chromium.scm  |4 +-
 gnu/packages/ci.scm|6 +-
 gnu/packages/cran.scm  |   39 +
 gnu/packages/crates-io.scm | 2252 +--
 gnu/packages/cups.scm  |6 +-
 gnu/packages/cvassistant.scm   |   90 +
 gnu/packages/databases.scm |   14 +-
 gnu/packages/disk.scm  |4 +-
 gnu/packages/education.scm |   40 +
 gnu/packages/emacs-xyz.scm |  129 +-
 gnu/packages/emulators.scm |   32 +-
 gnu/packages/enlightenment.scm |   31 +-
 gnu/packages/fpga.scm  |8 +-
 gnu/packages/ghostscript.scm   |   27 +-
 gnu/packages/glib.scm  |   38 +
 gnu/packages/gnome.scm |   10 +-
 gnu/packages/gnunet.scm|7 +-
 gnu/packages/golang.scm|   24 +
 gnu/packages/gsasl.scm |2 +-
 gnu/packages/gtk.scm   |4 +-
 gnu/packages/guile-xyz.scm |  165 +-
 gnu/packages/guile.scm |   11 +-
 gnu/packages/ipfs.scm  |4 +-
 gnu/packages/linux.scm |   38 +-
 gnu/packages/lisp.scm  |   98 +-
 gnu/packages/mail.scm  |5 +-
 gnu/packages/make-bootstrap.scm|  154 +-
 gnu/packages/maths.scm |4 +-
 gnu/packages/mingw.scm |6 +-
 gnu/packages/nano.scm  |4 +-
 gnu/packages/package-management.scm|  161 +-
 gnu/packages/parallel.scm  |4 +-
 gnu/packages/password-utils.scm|   24 +-
 .../patches/bash-4.4-linux-pgrp-pipe.patch |   30 +
 .../patches/enlightenment-fix-setuid-path.patch|   74 +-
 gnu/packages/patches/libextractor-exiv2.patch  |  124 +
 .../patches/mingw-w64-5.0rc2-gcc-4.9.3.patch   |  218 --
 gnu/packages/patches/mingw-w64-6.0.0-gcc.patch |   65 +
 gnu/packages/perl.scm  |7 +-
 gnu/packages/python-web.scm|   23 +-
 gnu/packages/python-xyz.scm|   94 +-
 gnu/packages/qt.scm|3 +
 gnu/packages/rednotebook.scm   |   91 +
 gnu/packages/ruby.scm  |  129 +-
 gnu/packages/security-token.scm|4 +-
 gnu/packages/terminals.scm |   56 +
 gnu/packages/text-editors.scm  |   53 +
 gnu/packages/textutils.scm |  109 +-
 gnu/packages/tls.scm   |8 +-
 gnu/packages/video.scm |   23 +-
 gnu/packages/web-browsers.scm  |  181 +-
 gnu/packages/web.scm   |   34 +
 gnu/packages/webkit.scm|6 +-
 gnu/packages/wine.scm  |4 +-
 gnu/packages/wm.scm|4 +-
 gnu/services/cuirass.scm   |   29 +-
 gnu/services/cups.scm  |   21 +-
 gnu/services/desktop.scm   |   40 +-
 gnu/services/pm.scm|7 +-
 gnu/tests/docker.scm   |   13 +-
 guix/build/cargo-build-system.scm  |   19 +-
 guix/build/make-bootstrap.scm

01/01: Merge branch 'master' into core-updates

2019-08-22 Thread guix-commits

mhw pushed a commit to branch core-updates
in repository guix.

commit 893c2df00daa4e6dd6a7ff3813d7df5329877f9e
Merge: 04b9b7b 0ccc9a0
Author: Mark H Weaver 
Date:   Thu Aug 22 15:53:27 2019 -0400

Merge branch 'master' into core-updates

 doc/guix.texi  |  18 +
 gnu/build/cross-toolchain.scm  |  15 +-
 gnu/build/linux-boot.scm   |   9 +-
 gnu/build/linux-modules.scm| 147 +-
 gnu/ci.scm |   3 +-
 gnu/local.mk   |   6 +-
 gnu/machine.scm|  27 +-
 gnu/machine/ssh.scm| 150 +-
 gnu/packages/admin.scm |  26 +-
 gnu/packages/astronomy.scm |   6 +-
 gnu/packages/audio.scm |  10 +-
 gnu/packages/bioconductor.scm  |  79 
 gnu/packages/bioinformatics.scm|  12 +-
 gnu/packages/bootstrap.scm |   2 +
 gnu/packages/ccache.scm|  15 +-
 gnu/packages/ci.scm|   8 +-
 gnu/packages/compression.scm   |  46 ++
 gnu/packages/cran.scm  | 168 ++-
 gnu/packages/cross-base.scm|   6 +-
 gnu/packages/databases.scm |   4 +-
 gnu/packages/dns.scm   |   8 +-
 gnu/packages/elm.scm   |  81 
 gnu/packages/emacs-xyz.scm | 518 -
 gnu/packages/emulators.scm |   4 +-
 gnu/packages/finance.scm   |  42 +-
 gnu/packages/fonts.scm |   5 +-
 gnu/packages/freeipmi.scm  |   4 +-
 gnu/packages/games.scm |  16 +-
 gnu/packages/genealogy.scm |   4 +-
 gnu/packages/gnome.scm |  45 +-
 gnu/packages/graphics.scm  |  47 ++
 gnu/packages/guile-xyz.scm |   2 +-
 gnu/packages/haskell.scm   |   6 +-
 gnu/packages/image-processing.scm  | 328 -
 gnu/packages/image-viewers.scm |  11 +-
 gnu/packages/libreoffice.scm   |   4 +-
 gnu/packages/linux.scm |  55 ++-
 gnu/packages/lisp.scm  |   6 +-
 gnu/packages/lxqt.scm  |  33 ++
 gnu/packages/mail.scm  |  13 +-
 gnu/packages/man.scm   |  12 +
 gnu/packages/maths.scm |   4 +-
 gnu/packages/mingw.scm | 111 +++--
 gnu/packages/mpd.scm   |   4 +-
 gnu/packages/music.scm |  10 +-
 gnu/packages/networking.scm|  92 +++-
 gnu/packages/package-management.scm|  10 +-
 .../patches/elm-compiler-disable-reactor.patch |  71 +++
 .../patches/elm-compiler-fix-map-key.patch |  38 ++
 .../patches/elm-compiler-relax-glsl-bound.patch|  19 +
 gnu/packages/python-web.scm|  29 +-
 gnu/packages/python-xyz.scm|  31 ++
 gnu/packages/ruby.scm  |  70 +++
 gnu/packages/sync.scm  |  14 +-
 gnu/packages/tmux.scm  |   6 +-
 gnu/packages/tor.scm   |  25 +-
 gnu/packages/version-control.scm   |   6 +-
 gnu/packages/video.scm |  44 +-
 gnu/packages/web.scm   |  14 +-
 gnu/packages/wine.scm  |   7 +-
 gnu/packages/xdisorg.scm   |   8 +-
 gnu/packages/xorg.scm  |  10 +-
 gnu/services.scm   |  56 +--
 gnu/services/base.scm  |   9 +-
 gnu/system/linux-initrd.scm|   5 +-
 guix/build-system/r.scm|  20 +-
 guix/channels.scm  |  28 +-
 guix/derivations.scm   |   6 +-
 guix/import/cran.scm   |  46 +-
 guix/import/gnome.scm  |  35 +-
 guix/remote.scm|  72 +--
 guix/scripts/deploy.scm|  25 +-
 guix/scripts/describe.scm  |  27 +-
 guix/scripts/refresh.scm   |  45 +-
 guix/ssh.scm   |  56 ++-
 guix/upstream.scm  |   9 +-
 m4/guix.m4 |   5 +-
 test

01/01: Merge branch 'master' into core-updates

2019-07-31 Thread guix-commits

mbakke pushed a commit to branch core-updates
in repository guix.

commit 6a2e54236e1b2c428c8fd478ee0f3bd8130703fa
Merge: 2cf1e37 3d88855
Author: Marius Bakke 
Date:   Wed Jul 31 14:28:56 2019 +0200

Merge branch 'master' into core-updates

 Makefile.am| 109 ++--
 configure.ac   |   4 +-
 doc/guix.texi  |  32 +-
 gnu/installer.scm  |   4 +-
 gnu/installer/locale.scm   |  21 +-
 gnu/local.mk   |   3 +
 gnu/machine/ssh.scm| 189 +--
 gnu/packages/admin.scm |  54 +-
 gnu/packages/bioconductor.scm  | 359 
 gnu/packages/bioinformatics.scm|   2 +-
 gnu/packages/ci.scm|   2 +-
 gnu/packages/compression.scm   |   4 +-
 gnu/packages/cran.scm  | 362 
 gnu/packages/crypto.scm|  11 +-
 gnu/packages/dictionaries.scm  |   4 +-
 gnu/packages/dns.scm   |   5 +-
 gnu/packages/ebook.scm |  27 +-
 gnu/packages/emacs-xyz.scm | 237 +++-
 gnu/packages/enlightenment.scm |   4 +-
 gnu/packages/games.scm |  35 +-
 gnu/packages/gnome.scm |   3 +
 gnu/packages/golang.scm| 605 +
 gnu/packages/graphics.scm  |  12 +-
 gnu/packages/guile-xyz.scm |   6 +-
 gnu/packages/guile.scm |   4 +
 gnu/packages/image-viewers.scm |   4 +-
 gnu/packages/image.scm |   4 +-
 gnu/packages/julia.scm | 262 ++---
 gnu/packages/kodi.scm  |   4 +-
 gnu/packages/linux.scm |  32 +-
 gnu/packages/lisp.scm  |  31 ++
 gnu/packages/llvm.scm  |  25 +-
 gnu/packages/mail.scm  | 145 -
 gnu/packages/networking.scm|  24 +
 gnu/packages/package-management.scm|   4 +-
 .../patches/dkimproxy-add-ipv6-support.patch   |  75 +++
 .../patches/libvirt-remove-ATTRIBUTE_UNUSED.patch  |  34 ++
 gnu/packages/python-xyz.scm|  33 +-
 gnu/packages/sdl.scm   |   4 +-
 gnu/packages/spice.scm |  21 +-
 gnu/packages/syncthing.scm | 155 +++---
 gnu/packages/telephony.scm |   7 +-
 gnu/packages/terminals.scm |  30 +
 gnu/packages/text-editors.scm  | 131 +
 gnu/packages/textutils.scm |  47 +-
 gnu/packages/tls.scm   |  28 +-
 gnu/packages/video.scm |  86 ++-
 gnu/packages/virtualization.scm|  42 +-
 gnu/packages/web.scm   |  87 ++-
 gnu/packages/xorg.scm  |   4 +-
 gnu/services/herd.scm  |   6 +
 gnu/system/vm.scm  |   2 +-
 gnu/tests/reconfigure.scm  | 262 +
 guix/build/go-build-system.scm |   3 +
 guix/discovery.scm |   8 +-
 guix/docker.scm|  19 +-
 guix/gexp.scm  |  49 +-
 guix/git-download.scm  |   4 +-
 guix/git.scm   |  69 ++-
 guix/import/cpan.scm   |  14 +-
 guix/import/crate.scm  |   6 +-
 guix/import/gem.scm|  10 +-
 guix/import/github.scm |  13 +-
 guix/import/json.scm   |  11 +-
 guix/import/launchpad.scm  |  13 +-
 guix/import/pypi.scm   |   8 +-
 guix/import/stackage.scm   |   4 +-
 guix/import/utils.scm  |  25 +-
 guix/scripts/build.scm |  13 +-
 guix/scripts/deploy.scm|  14 +-
 guix/scripts/import/json.scm   |   2 +-
 guix/scripts/pack.scm  |   2 +-
 guix/scripts/system.scm| 181 ++
 guix/scripts/system/reconfigure.scm| 237 
 guix/self.scm  |   2 +-
 guix/swh.scm   |  35 +-
 m4/guix.m4

01/01: Merge branch 'master' into core-updates

2019-07-22 Thread guix-commits

mbakke pushed a commit to branch core-updates
in repository guix.

commit ccad0e4d6973da7af8badfb7125f35f7e51eb2d7
Merge: d478cc0 2698654
Author: Marius Bakke 
Date:   Mon Jul 22 18:58:48 2019 +0200

Merge branch 'master' into core-updates

 Makefile.am|   1 +
 doc/guix.texi  |   2 +-
 gnu/local.mk   |   1 +
 gnu/packages/audio.scm |  33 ++
 gnu/packages/backup.scm|   2 +-
 gnu/packages/bioinformatics.scm|   8 +-
 gnu/packages/chromium.scm  |   6 +-
 gnu/packages/compression.scm   |  34 +-
 gnu/packages/emacs-xyz.scm |  31 +-
 gnu/packages/geo.scm   |  19 +
 gnu/packages/haskell.scm   | 416 
 gnu/packages/libreoffice.scm   |  10 +
 gnu/packages/linux.scm | 551 -
 gnu/packages/logging.scm   |  10 +
 gnu/packages/networking.scm|   4 +-
 .../darkice-workaround-fpermissive-error.patch |  62 +++
 gnu/packages/perl-check.scm|   4 +-
 gnu/packages/perl.scm  |  14 +-
 gnu/packages/python-xyz.scm|  21 +-
 gnu/packages/qt.scm|   4 +-
 gnu/packages/serialization.scm |   4 +-
 gnu/packages/shells.scm|   4 +-
 gnu/packages/sync.scm  |   2 +-
 gnu/packages/tor.scm   |   2 +-
 gnu/packages/video.scm |  14 +-
 gnu/packages/virtualization.scm|  17 +-
 gnu/packages/web.scm   |   4 +-
 gnu/system/file-systems.scm|   4 +-
 gnu/system/linux-container.scm |  49 +-
 guix/channels.scm  |  94 ++--
 guix/discovery.scm |   6 +-
 guix/lint.scm  |  25 +-
 guix/scripts/archive.scm   |   1 +
 guix/scripts/lint.scm  |   7 +-
 guix/scripts/pack.scm  |   7 +-
 guix/swh.scm   |  10 +-
 guix/ui.scm|  41 +-
 tests/channels.scm |  72 ++-
 tests/containers.scm   |  50 ++
 tests/guix-build.sh|  31 +-
 tests/lint.scm |  31 +-
 tests/swh.scm  |  76 +++
 42 files changed, 1495 insertions(+), 289 deletions(-)

diff --cc gnu/local.mk
index c95a5c8,eb3b0dc..5be252c
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@@ -747,7 -748,9 +747,8 @@@ dist_patch_DATA =  

%D%/packages/patches/cube-nocheck.patch \
%D%/packages/patches/cursynth-wave-rand.patch   \
%D%/packages/patches/cvs-CVE-2017-12836.patch   \
+   %D%/packages/patches/darkice-workaround-fpermissive-error.patch \
%D%/packages/patches/dbus-helper-search-path.patch  \
 -  %D%/packages/patches/dbus-CVE-2019-12749.patch  \
%D%/packages/patches/dealii-mpi-deprecations.patch  \
%D%/packages/patches/deja-dup-use-ref-keyword-for-iter.patch\
%D%/packages/patches/dfu-programmer-fix-libusb.patch\
diff --cc gnu/packages/linux.scm
index a7d4872,5288328..8ae64a3
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@@ -232,27 -510,38 +510,38 @@@ corresponding UPSTREAM-SOURCE (an origi
  (description "Headers of the Linux-Libre kernel.")
  (license license:gpl2)))
  
- (define %boot-logo-patch
-   ;; Linux-Libre boot logo featuring Freedo and a gnu.
-   (origin
- (method url-fetch)
- (uri (string-append "http://www.fsfla.org/svn/fsfla/software/linux-libre/";
- "lemote/gnewsense/branches/3.16/100gnu+freedo.patch"))
- (sha256
-  (base32
-   "1hk9swxxc80bmn2zd2qr5ccrjrk28xkypwhl4z0qx4hbivj7qm06"
+ (define-public linux-libre-headers-5.2
+   (make-linux-libre-headers* linux-libre-5.2-version
+  linux-libre-5.2-source))
  
- (define %linux-libre-arm-export-__sync_icache_dcache-patch
-   (origin
- (method url-fetch)
- (uri (string-append
-   "https://salsa.debian.org/kernel-team/linux";
-   "/raw/34a7d9011fcfcfa38b68282fd2b1a8797e6834f0"
-   "/debian/patches/bugfix/arm/"
-   "arm-mm-export-__sync_icache_dcache-for-xen-privcmd.patch"))
- (file-name "linux-libre-arm-export-__sync_icache_dcache.patch")
- (sha256
-  (base32 "1ifnfhpakzffn4b8n7

01/01: Merge branch 'master' into core-updates

2019-07-18 Thread guix-commits

mbakke pushed a commit to branch core-updates
in repository guix.

commit 2ee70a5b11e83e1abe4b749a21f15852f7fcf5e1
Merge: 96783ed 4678cc4
Author: Marius Bakke 
Date:   Fri Jul 19 01:15:59 2019 +0200

Merge branch 'master' into core-updates

 doc/guix.texi|   7 +-
 gnu/local.mk |   2 +-
 gnu/machine/ssh.scm  |   4 +-
 gnu/packages/astronomy.scm   |  35 ++
 gnu/packages/chromium.scm|  33 +-
 gnu/packages/debug.scm   |   9 +-
 gnu/packages/dns.scm |   4 +-
 gnu/packages/emacs-xyz.scm   | 136 ++-
 gnu/packages/games.scm   |  31 --
 gnu/packages/geo.scm |  68 
 gnu/packages/gnupg.scm   |  11 +-
 gnu/packages/i2p.scm | 105 +
 gnu/packages/logging.scm |  30 +
 gnu/packages/patches/glog-gcc-5-demangling.patch |  64 ---
 gnu/packages/python-xyz.scm  |   2 +-
 gnu/packages/rdf.scm |   8 +-
 gnu/packages/web.scm |  35 ++
 guix/scripts/pull.scm|  13 +--
 18 files changed, 461 insertions(+), 136 deletions(-)

diff --cc gnu/local.mk
index e97ff50,c2b6f14..01ec944
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@@ -881,15 -879,9 +882,14 @@@ dist_patch_DATA =

%D%/packages/patches/glibc-versioned-locpath.patch  \
%D%/packages/patches/glibc-2.27-git-fixes.patch \
%D%/packages/patches/glibc-2.28-git-fixes.patch \
 +  %D%/packages/patches/glibc-2.28-supported-locales.patch \
 +  %D%/packages/patches/glibc-2.29-git-updates.patch   \
 +  %D%/packages/patches/glibc-supported-locales.patch  \
 +  %D%/packages/patches/glibc-2.27-supported-locales.patch \
%D%/packages/patches/glusterfs-use-PATH-instead-of-hardcodes.patch  
\
-   %D%/packages/patches/glog-gcc-5-demangling.patch\
%D%/packages/patches/gmp-arm-asm-nothumb.patch  \
%D%/packages/patches/gmp-faulty-test.patch  \
 +  %D%/packages/patches/gnome-control-center-udisks.patch  \
%D%/packages/patches/gnome-shell-theme.patch\
%D%/packages/patches/gnome-tweaks-search-paths.patch\
%D%/packages/patches/gnutls-skip-trust-store-test.patch \

01/01: Merge branch 'master' into core-updates

2019-06-27 Thread guix-commits

civodul pushed a commit to branch core-updates
in repository guix.

commit 5cc1075a76392666d3d733837f5c6252b1e48002
Merge: 9c2563a c30d117
Author: Ludovic Courtès 
Date:   Thu Jun 27 23:33:48 2019 +0200

Merge branch 'master' into core-updates

 build-aux/compile-all.scm  |  59 +-
 doc/guix.texi  |  34 +-
 gnu/build/accounts.scm |  14 +-
 gnu/build/linux-container.scm  |  16 +-
 gnu/local.mk   |  10 +-
 gnu/packages.scm   |   8 +-
 gnu/packages/admin.scm |   4 +-
 gnu/packages/algebra.scm   |  47 +-
 gnu/packages/android.scm   |  12 +
 gnu/packages/apl.scm   |   8 +-
 gnu/packages/astronomy.scm |  99 +++-
 gnu/packages/bash.scm  |   8 +-
 gnu/packages/bioconductor.scm  |  24 +
 gnu/packages/bioinformatics.scm|  12 +-
 gnu/packages/calcurse.scm  |   4 +-
 gnu/packages/check.scm |  11 +-
 gnu/packages/chromium.scm  |   5 +
 gnu/packages/databases.scm |  22 +-
 gnu/packages/disk.scm  |  13 +-
 gnu/packages/emacs-xyz.scm | 541 +-
 gnu/packages/emulators.scm |   4 +-
 gnu/packages/enchant.scm   |   5 +-
 gnu/packages/finance.scm   |   4 +-
 gnu/packages/freedesktop.scm   |   4 +-
 gnu/packages/game-development.scm  |  34 +-
 gnu/packages/games.scm |  73 ++-
 gnu/packages/genealogy.scm | 112 
 gnu/packages/geo.scm   |  33 ++
 gnu/packages/gl.scm|  25 +
 gnu/packages/gnome.scm |  15 +-
 gnu/packages/gnupg.scm |  18 +-
 gnu/packages/gnuzilla.scm  |   4 +-
 gnu/packages/gtk.scm   |  37 +-
 gnu/packages/guile-xyz.scm |  66 ++-
 gnu/packages/image.scm |  28 +-
 gnu/packages/java.scm  |  44 ++
 gnu/packages/linux.scm |  20 +-
 gnu/packages/lisp.scm  | 627 +
 gnu/packages/llvm.scm  |  41 +-
 gnu/packages/mail.scm  |   8 +-
 gnu/packages/mastodon.scm  |   6 +
 gnu/packages/mate.scm  |  11 +-
 gnu/packages/maths.scm |   4 +-
 gnu/packages/mc.scm|   4 +-
 gnu/packages/messaging.scm |  62 +-
 gnu/packages/mpi.scm   |   4 +-
 gnu/packages/music.scm |  43 +-
 .../patches/emacs-zones-called-interactively.patch |  18 +-
 gnu/packages/patches/khmer-use-libraries.patch |  16 -
 .../patches/lcalc-default-parameters-1.patch   |  26 +
 .../patches/lcalc-default-parameters-2.patch   |  58 ++
 gnu/packages/patches/lcalc-lcommon-h.patch |  13 +
 .../patches/lcalc-using-namespace-std.patch|  43 ++
 gnu/packages/patches/leela-zero-gtest.patch|  40 ++
 gnu/packages/patches/lrcalc-includes.patch |  92 +++
 .../patches/python-pyatspi-python-37.patch |  82 +++
 gnu/packages/pdf.scm   |   4 +-
 gnu/packages/perl.scm  |  60 +-
 gnu/packages/python-check.scm  | 135 +
 gnu/packages/python-compression.scm|  33 +-
 gnu/packages/python-crypto.scm |   5 +-
 gnu/packages/python-xyz.scm| 299 --
 gnu/packages/sagemath.scm  | 123 +++-
 gnu/packages/sawfish.scm   |  34 +-
 gnu/packages/sync.scm  |  18 +-
 gnu/packages/tcl.scm   |  42 +-
 gnu/packages/text-editors.scm  |  49 ++
 gnu/packages/video.scm |   4 +-
 gnu/packages/virtualization.scm|  48 +-
 gnu/packages/web.scm   |  10 +-
 gnu/packages/wine.scm  |   6 +-
 gnu/packages/xdisorg.scm   |   7 +-
 gnu/packages/xfce.scm  |   4 +-
 gnu/packages/xorg.scm  |  21 +-
 gnu/services/networking.scm|  18 +-
 gnu/system/linux-initrd.scm|   7 +-
 gnu/tests/base.scm |   4 +-
 gnu/

01/01: Merge branch 'master' into core-updates

2019-02-09 Thread guix-commits

mbakke pushed a commit to branch core-updates
in repository guix.

commit ebbb7286b91e21cb26153e3d0a3ea8017cf16224
Merge: d41f639 aefa291
Author: Marius Bakke 
Date:   Sat Feb 9 21:11:00 2019 +0100

Merge branch 'master' into core-updates

 Makefile.am|2 +-
 doc/guix.texi  |   44 +-
 gnu/local.mk   |   40 +-
 gnu/packages/abiword.scm   |5 +-
 gnu/packages/accessibility.scm |2 +-
 gnu/packages/admin.scm |  193 ++--
 gnu/packages/audio.scm |2 +-
 gnu/packages/avr.scm   |   23 +-
 gnu/packages/base.scm  |   38 +-
 gnu/packages/bioinformatics.scm|   17 +-
 gnu/packages/boost.scm |   26 +-
 gnu/packages/build-tools.scm   |4 +-
 gnu/packages/cdrom.scm |   14 +-
 gnu/packages/certs.scm |4 +-
 gnu/packages/check.scm |2 +-
 gnu/packages/chemistry.scm |   27 +-
 gnu/packages/cmake.scm |4 +-
 gnu/packages/compression.scm   |   12 +-
 gnu/packages/compton.scm   |   22 +-
 gnu/packages/coq.scm   |   48 +
 gnu/packages/cups.scm  |8 +-
 gnu/packages/curl.scm  |   18 +-
 gnu/packages/cyrus-sasl.scm|9 +-
 gnu/packages/databases.scm |   13 +-
 gnu/packages/ebook.scm |   23 +-
 gnu/packages/emacs-xyz.scm |  158 +--
 gnu/packages/engineering.scm   |   22 +
 gnu/packages/enlightenment.scm |1 +
 gnu/packages/finance.scm   |   52 +-
 gnu/packages/freedesktop.scm   |8 +-
 gnu/packages/game-development.scm  |6 +-
 gnu/packages/games.scm |   24 +-
 gnu/packages/geo.scm   |3 +-
 gnu/packages/ghostscript.scm   |8 +-
 gnu/packages/gl.scm|   31 +-
 gnu/packages/glib.scm  |   27 +-
 gnu/packages/gnome.scm |   58 +-
 gnu/packages/gnuzilla.scm  |   10 +-
 gnu/packages/gstreamer.scm |   32 +-
 gnu/packages/gtk.scm   |   48 +-
 gnu/packages/guile-xyz.scm |   43 +-
 gnu/packages/icu4c.scm |4 +-
 gnu/packages/image.scm |   12 +-
 gnu/packages/imagemagick.scm   |4 +-
 gnu/packages/libevent.scm  |4 +-
 gnu/packages/libreoffice.scm   |   45 +-
 gnu/packages/libusb.scm|   53 +-
 gnu/packages/linux.scm |   82 +-
 gnu/packages/mail.scm  |   21 +-
 gnu/packages/maths.scm |  512 +-
 gnu/packages/mpd.scm   |2 +-
 gnu/packages/mpi.scm   |   38 +-
 gnu/packages/music.scm |   10 +-
 gnu/packages/nettle.scm|4 +-
 gnu/packages/ocaml.scm | 1077 ++--
 gnu/packages/openldap.scm  |   10 +-
 gnu/packages/package-management.scm|   26 +-
 ...r.patch => allegro-mesa-18.2.5-and-later.patch} |0
 patch => allegro4-mesa-18.2.5-and-later.patch} |   14 +-
 gnu/packages/patches/cairo-CVE-2016-9082.patch |  122 ---
 gnu/packages/patches/cairo-setjmp-wrapper.patch|   78 --
 .../cool-retro-term-dont-check-uninit-member.patch |   33 -
 .../patches/cool-retro-term-fix-array-size.patch   |   25 -
 .../patches/cool-retro-term-memory-leak-1.patch|   32 -
 .../patches/cyrus-sasl-CVE-2013-4122.patch |  130 ---
 gnu/packages/patches/efl-mesa-compat.patch |   21 +
 gnu/packages/patches/fbreader-curl-7.62.patch  |   30 +
 .../patches/ghostscript-CVE-2018-16509.patch   |  193 
 gnu/packages/patches/ghostscript-bug-699708.patch  |  160 ---
 .../patches/glib-networking-connection.patch   |   51 +
 .../patches/glib-networking-ssl-cert-file.patch|   29 -
 .../patches/gnutls-skip-pkgconfig-test.patch   |   24 -
 .../patches/gst-plugins-good-libvpx-compat.patch   |   58 ++
 .../patches/hdf5-1.8-mpi-deprecations.patch|  169 +++
 gnu/packages/patches/hdf5-mpi-deprecations.patch   |   61 ++
 .../patches/inkscape-poppler-compat3.patch |  499 +
 .../patches/js

01/01: Merge branch 'master' into core-updates

2019-02-06 Thread guix-commits

rekado pushed a commit to branch core-updates
in repository guix.

commit ba88eea2b3a8a33ecd7fc0ec64e3917c6c2fe21d
Merge: f380f9d 4aeb7f3
Author: Ricardo Wurmus 
Date:   Wed Feb 6 13:03:26 2019 +0100

Merge branch 'master' into core-updates

 .dir-locals.el | 1 +
 .mailmap   | 1 +
 Makefile.am| 8 +-
 README | 2 +-
 TODO   |39 +
 build-aux/build-self.scm   |70 +-
 build-aux/hydra/evaluate.scm   |55 +-
 build-aux/hydra/gnu-system.scm |   466 +-
 build-aux/pre-inst-env.in  | 7 +-
 build-aux/run-system-tests.scm | 6 +-
 build-aux/test-env.in  |22 +-
 configure.ac   |21 +-
 doc/contributing.texi  |   483 +-
 doc/guix.texi  | 13857 +++--
 etc/guix-install.sh| 9 +-
 gnu/bootloader.scm |13 +-
 gnu/build/file-systems.scm |14 +-
 gnu/build/linux-modules.scm|28 +
 build-aux/hydra/gnu-system.scm => gnu/ci.scm   |   199 +-
 gnu/installer.scm  |   359 +
 gnu/installer/aux-files/SUPPORTED  |   484 +
 gnu/installer/aux-files/logo.txt   |19 +
 gnu/installer/connman.scm  |   400 +
 gnu/installer/final.scm|36 +
 gnu/installer/hostname.scm |23 +
 gnu/installer/keymap.scm   |   172 +
 gnu/installer/locale.scm   |   210 +
 gnu/installer/newt.scm |   128 +
 gnu/installer/newt/ethernet.scm|81 +
 gnu/installer/newt/final.scm   |86 +
 gnu/installer/newt/hostname.scm|26 +
 gnu/installer/newt/keymap.scm  |   122 +
 gnu/installer/newt/locale.scm  |   217 +
 gnu/installer/newt/menu.scm|44 +
 gnu/installer/newt/network.scm |   173 +
 gnu/installer/newt/page.scm|   530 +
 gnu/installer/newt/partition.scm   |   766 +
 gnu/installer/newt/services.scm|48 +
 gnu/installer/newt/timezone.scm|83 +
 gnu/installer/newt/user.scm|   175 +
 gnu/installer/newt/utils.scm   |43 +
 gnu/installer/newt/welcome.scm |   118 +
 gnu/installer/newt/wifi.scm|   243 +
 gnu/installer/parted.scm   |  1312 ++
 gnu/installer/record.scm   |84 +
 gnu/installer/services.scm |59 +
 gnu/installer/steps.scm|   237 +
 gnu/installer/timezone.scm |   127 +
 gnu/installer/user.scm |50 +
 gnu/installer/utils.scm|63 +
 gnu/local.mk   |   134 +-
 gnu/packages.scm   |   259 +-
 gnu/packages/accessibility.scm |35 +
 gnu/packages/ada.scm   | 3 +-
 gnu/packages/admin.scm |42 +-
 gnu/packages/adns.scm  |32 +
 gnu/packages/algebra.scm   |85 +-
 gnu/packages/android.scm   |12 +-
 gnu/packages/animation.scm |42 +
 gnu/packages/anthy.scm | 2 +-
 gnu/packages/antivirus.scm | 4 +-
 gnu/packages/apl.scm   | 4 +-
 gnu/packages/aspell.scm| 8 +-
 gnu/packages/assembly.scm  |87 +-
 gnu/packages/astronomy.scm |20 +-
 gnu/packages/audio.scm |   108 +-
 gnu/packages/autotools.scm | 6 +-
 gnu/packages/aux-files/linux-libre/4.19-arm64.conf | 2 +-
 .../linux-libre/{4.19-arm64.conf => 4.20-arm.conf} |  2966 +--
 .../{4.19-arm64.conf => 4.20-arm64.conf}   |   144 +-
 .../{4.19-arm64.conf => 4.20-i686.conf}|  7327 ---
 .../{4.19-arm64.conf => 4.20-x86_64.conf}  |  7123 ---
 gnu/packages/avahi.scm | 2 +-
 gnu/packages/axoloti.scm   |28 +-
 gnu/packages/backup.scm|35 +-
 gnu/packages/base.scm

01/01: Merge branch 'master' into core-updates

2018-11-29 Thread guix-commits

mbakke pushed a commit to branch core-updates
in repository guix.

commit 25ca46985ccb26880f98b479d2a3ac862b20006e
Merge: e2b9ed7 7af6e5d
Author: Marius Bakke 
Date:   Thu Nov 29 15:56:49 2018 +0100

Merge branch 'master' into core-updates

 Makefile.am|   2 +
 doc/guix.texi  |  18 +-
 gnu/local.mk   |   5 +
 gnu/packages/audio.scm |  36 ++
 gnu/packages/bioconductor.scm  |  38 ++
 gnu/packages/code.scm  |   7 +-
 gnu/packages/databases.scm |   4 +-
 gnu/packages/elf.scm   |   4 +-
 gnu/packages/emacs.scm | 158 +++---
 gnu/packages/enlightenment.scm |  11 +-
 gnu/packages/guile.scm |   6 +-
 gnu/packages/kodi.scm  |   4 +-
 gnu/packages/linux.scm |  18 +-
 gnu/packages/lisp.scm  | 257 +-
 gnu/packages/llvm.scm  |  74 ++-
 gnu/packages/machine-learning.scm  |   7 +-
 gnu/packages/mail.scm  |   8 +-
 gnu/packages/maths.scm |  17 +-
 gnu/packages/mtools.scm|   4 +-
 gnu/packages/ocaml.scm |  30 +-
 gnu/packages/package-management.scm|   9 +-
 gnu/packages/parallel.scm  |   4 +-
 .../libopenshot-tests-with-system-libs.patch   |  95 
 gnu/packages/patches/scribus-poppler.patch |  72 +++
 gnu/packages/patches/x265-arm-flags.patch  |  36 ++
 gnu/packages/phabricator.scm   | 124 +
 gnu/packages/python.scm|  48 +-
 gnu/packages/qt.scm|  11 +-
 gnu/packages/scheme.scm| 182 +++
 gnu/packages/scribus.scm   |   4 +-
 gnu/packages/version-control.scm   |  64 +++
 gnu/packages/video.scm | 183 ++-
 gnu/packages/vim.scm   |  12 +-
 gnu/packages/virtualization.scm|  56 +++
 gnu/packages/web-browsers.scm  |  39 ++
 gnu/packages/web.scm   |   6 +-
 gnu/packages/wine.scm  |   6 +-
 gnu/services/ssh.scm   |  10 +-
 gnu/system/examples/bare-bones.tmpl|   4 +-
 guix/channels.scm  |  12 +
 guix/derivations.scm   |  30 +-
 guix/docker.scm|   9 +-
 guix/download.scm  |  24 +-
 guix/gexp.scm  |   5 +-
 guix/git-download.scm  |  70 ++-
 guix/grafts.scm|   7 +-
 guix/inferior.scm  |  70 ++-
 guix/scripts/describe.scm  |   4 +-
 guix/scripts/hash.scm  |   5 +-
 guix/scripts/pack.scm  |  19 +
 guix/scripts/repl.scm  |   5 +-
 guix/ssh.scm   |   6 +-
 guix/status.scm|  14 +-
 guix/swh.scm   | 560 +
 guix/ui.scm|  26 +-
 nix/nix-daemon/nix-daemon.cc   |   6 +
 po/doc/local.mk|  12 +-
 tests/derivations.scm  |  10 +
 tests/gexp.scm |  10 +-
 tests/grafts.scm   |  13 +-
 tests/inferior.scm |   9 +
 61 files changed, 2228 insertions(+), 371 deletions(-)

diff --cc gnu/packages/llvm.scm
index 0d3bff9,dace546..8a9d1d3
--- a/gnu/packages/llvm.scm
+++ b/gnu/packages/llvm.scm
@@@ -7,7 -7,8 +7,9 @@@
  ;;; Copyright © 2017 Roel Janssen 
  ;;; Copyright © 2018 Marius Bakke 
  ;;; Copyright © 2018 Tobias Geerinckx-Rice 
 +;;; Copyright © 2018 Efraim Flashner 
+ ;;; Copyright © 2018 Tim Gesthuizen 
+ ;;; Copyright © 2018 Pierre Neidhardt 
  ;;;
  ;;; This file is part of GNU Guix.
  ;;;
diff --cc gnu/packages/machine-learning.scm
index 7b9b28a,a7df9dc..5fb375c
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@@ -331,9 -332,8 +332,9 @@@ algorithm."
   (origin
 (method url-fetch)
 (uri (string-append
-  "http://www.imbs-luebeck.de/imbs/sites/default/files/u59/";
-  "randomjungle-" version ".tar_.gz"))
+  "https://www.imbs.uni-luebeck.de/fileadmin/files/Software";
+  "/randomjungle/

01/01: Merge branch 'master' into core-updates

2018-11-24 Thread guix-commits

mbakke pushed a commit to branch core-updates
in repository guix.

commit 4820b75de0688ed3df3a94d69240f41984d1fb3c
Merge: 1261804 1b30832
Author: Marius Bakke 
Date:   Sat Nov 24 19:44:05 2018 +0100

Merge branch 'master' into core-updates

 gnu/local.mk  |   1 +
 gnu/packages/clojure.scm  | 293 ++
 gnu/packages/file-systems.scm |  49 ++
 gnu/packages/freedesktop.scm  |   6 +-
 gnu/packages/gnome.scm|   2 +-
 gnu/packages/linux.scm|  16 +-
 gnu/packages/lisp.scm | 354 +++---
 gnu/packages/ocaml.scm|   1 -
 gnu/packages/scheme.scm   |  51 ++
 guix/build-system/clojure.scm |   2 +-
 10 files changed, 431 insertions(+), 344 deletions(-)

01/01: Merge branch 'master' into core-updates

2018-11-23 Thread guix-commits

mbakke pushed a commit to branch core-updates
in repository guix.

commit 4d8f4a3f00268230f879a81f32524fd7c3576ad0
Merge: c491f7f dc48510
Author: Marius Bakke 
Date:   Sat Nov 24 01:58:18 2018 +0100

Merge branch 'master' into core-updates

 Makefile.am|7 +-
 NEWS   |   46 +
 README |2 +-
 doc/guix.texi  |   46 +-
 etc/guix-daemon.conf.in|2 +-
 etc/guix-daemon.service.in |4 +-
 etc/guix-install.sh|   21 +-
 etc/guix-publish.conf.in   |2 +-
 etc/guix-publish.service.in|4 +-
 gnu/bootloader/u-boot.scm  |6 +
 gnu/local.mk   |6 +
 gnu/packages/algebra.scm   |   40 +-
 gnu/packages/audio.scm |4 +-
 gnu/packages/bittorrent.scm|   59 +-
 gnu/packages/bootloaders.scm   |   16 +
 gnu/packages/emacs.scm |   97 +-
 gnu/packages/lisp.scm  |   16 +-
 gnu/packages/maths.scm |   16 +-
 gnu/packages/messaging.scm |4 +-
 .../patches/u-boot-pinebook-a64-update-dts.patch   | 1485 
 gnu/packages/patches/u-boot-pinebook-dts.patch |  388 +
 .../patches/u-boot-pinebook-mmc-calibration.patch  |   98 ++
 .../patches/u-boot-pinebook-r_i2c-controller.patch |   70 +
 .../patches/u-boot-pinebook-syscon-node.patch  |   38 +
 .../patches/u-boot-pinebook-video-bridge.patch |   50 +
 gnu/packages/photo.scm |4 +-
 gnu/packages/python-crypto.scm |   31 +
 gnu/packages/python.scm|4 +-
 gnu/packages/xorg.scm  |4 +-
 gnu/system/install.scm |6 +
 guix/scripts/describe.scm  |   98 +-
 guix/scripts/pack.scm  |   20 +-
 guix/status.scm|3 +
 guix/store/database.scm|2 +-
 m4/guix.m4 |2 +-
 tests/guix-pack-localstatedir.sh   |   69 +
 36 files changed, 2666 insertions(+), 104 deletions(-)

01/01: Merge branch 'master' into core-updates

2018-11-21 Thread guix-commits

mbakke pushed a commit to branch core-updates
in repository guix.

commit ec8130eb23b79c2b8b61043f25dafcefd0daafe7
Merge: 437c78b d422cbb
Author: Marius Bakke 
Date:   Thu Nov 22 00:10:44 2018 +0100

Merge branch 'master' into core-updates

 gnu/build/linux-initrd.scm |  22 +++-
 gnu/packages/build-tools.scm   |  37 ---
 gnu/packages/games.scm | 116 ++---
 gnu/packages/gnome.scm |  18 ++--
 gnu/packages/image-viewers.scm |   4 +-
 gnu/packages/image.scm |  56 ++
 .../patches/teeworlds-use-latest-wavpack.patch |  72 ++---
 gnu/packages/terminals.scm |   4 +-
 gnu/packages/tls.scm   |   4 +-
 gnu/packages/version-control.scm   |   6 +-
 gnu/packages/web.scm   |  32 ++
 gnu/packages/webkit.scm|   4 +-
 gnu/system.scm |  11 +-
 gnu/system/linux-initrd.scm|   9 +-
 gnu/system/vm.scm  |   2 +-
 guix/scripts/system.scm|   2 +-
 16 files changed, 291 insertions(+), 108 deletions(-)

01/01: Merge branch 'master' into core-updates

2018-11-19 Thread Marius Bakke

mbakke pushed a commit to branch core-updates
in repository guix.

commit 4f70db97a040b35f125484ce8885766ca5807dd4
Merge: 2d54685 9acfe27
Author: Marius Bakke 
Date:   Tue Nov 20 01:14:12 2018 +0100

Merge branch 'master' into core-updates

 Makefile.am|2 +
 config-daemon.ac   |4 +-
 doc/contributing.texi  |3 +-
 doc/guix.texi  |   81 +-
 gnu/bootloader/extlinux.scm|6 +-
 gnu/bootloader/grub.scm|  104 +-
 gnu/bootloader/u-boot.scm  |5 -
 gnu/build/activation.scm   |   17 +-
 gnu/local.mk   |6 +
 gnu/packages/algebra.scm   |   36 +-
 gnu/packages/antivirus.scm |  156 ++
 gnu/packages/audio.scm |  122 +-
 gnu/packages/bioinformatics.scm|  111 +-
 gnu/packages/bootloaders.scm   |6 +-
 gnu/packages/cran.scm  |   24 +-
 gnu/packages/emacs.scm |6 +-
 gnu/packages/game-development.scm  |4 +-
 gnu/packages/games.scm |4 +-
 gnu/packages/gl.scm|3 +-
 gnu/packages/guile.scm |6 +-
 gnu/packages/image.scm |4 +-
 gnu/packages/java.scm  |  145 --
 gnu/packages/linux.scm |   16 +-
 gnu/packages/lisp.scm  |  276 ++-
 gnu/packages/llvm.scm  |   35 +-
 gnu/packages/machine-learning.scm  |5 +-
 gnu/packages/man.scm   |   14 +-
 gnu/packages/maths.scm |  127 +-
 gnu/packages/mpi.scm   |   42 +
 gnu/packages/multiprecision.scm|   66 +
 gnu/packages/ocaml.scm | 2328 ++--
 gnu/packages/package-management.scm|7 +-
 gnu/packages/patches/clamav-config-llvm-libs.patch |   14 +
 .../patches/clamav-system-tomsfastmath.patch   |  102 +
 .../patches/emacs-realgud-fix-configure-ac.patch   |   27 +
 ...ml-bisect-fix-camlp4-in-another-directory.patch |  246 ++-
 gnu/packages/patches/tomsfastmath-constness.patch  |   76 +
 gnu/packages/python.scm|   73 +-
 gnu/packages/simulation.scm|  490 +++-
 gnu/packages/statistics.scm|8 +-
 gnu/packages/version-control.scm   |   52 +
 gnu/packages/web.scm   |4 +-
 gnu/system.scm |  166 +-
 gnu/system/linux-initrd.scm|   13 +-
 gnu/system/vm.scm  |  210 +-
 gnu/tests/base.scm |   11 +-
 guix/build-system/clojure.scm  |  195 ++
 guix/build-system/ocaml.scm|   24 +-
 guix/build/clojure-build-system.scm|  110 +
 guix/build/clojure-utils.scm   |  265 +++
 guix/build/ocaml-build-system.scm  |   45 +-
 guix/download.scm  |   35 +-
 guix/progress.scm  |   28 +-
 guix/scripts/system.scm|  115 +-
 nix/libstore/local-store.cc|   17 +-
 nix/local.mk   |7 +-
 nix/nix-daemon/guix-daemon.cc  |   12 -
 .../{guix-authenticate.in => authenticate.in}  |0
 58 files changed, 4688 insertions(+), 1428 deletions(-)

diff --cc gnu/local.mk
index 447f08d,d2f085e..3582227
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@@ -608,14 -610,14 +610,16 @@@ dist_patch_DATA =   

%D%/packages/patches/catdoc-CVE-2017-0.patch\
%D%/packages/patches/cdparanoia-fpic.patch  \
%D%/packages/patches/cdrtools-3.01-mkisofs-isoinfo.patch\
 +  %D%/packages/patches/ceph-detect-rocksdb.patch  \
%D%/packages/patches/ceph-disable-cpu-optimizations.patch   \
 -  %D%/packages/patches/ceph-rocksdb-compat.patch  \
%D%/packages/patches/ceph-skip-collect-sys-info-test.patch  \
%D%/packages/patches/ceph-skip-unittest_blockdev.patch  \
 +  %D%/packages/patches/ceph-volume-respect-PATH.patch \
%D%/packages/patches/chmlib-inttypes.patch  \
+   %D%/packages/patches/clamav-config-llvm-libs.patch  \
+   %D%/packages/patches/clamav-system-tomsfastmath.patch   \
%D%/packages/patches/clang-3.5-libc-search-path.patch   \
 +  %D%/packages/patches/cla

01/01: Merge branch 'master' into core-updates

2018-11-14 Thread Marius Bakke

mbakke pushed a commit to branch core-updates
in repository guix.

commit 79ee97a144890be0724aaf796e2a771179d7
Merge: 7d9d521 e921993
Author: Marius Bakke 
Date:   Wed Nov 14 21:20:46 2018 +0100

Merge branch 'master' into core-updates

 doc/guix.texi |  47 +-
 gnu/local.mk  |   2 +-
 gnu/packages/admin.scm|   4 +-
 gnu/packages/audio.scm| 192 +++---
 gnu/packages/backup.scm   |  19 +-
 gnu/packages/bioconductor.scm |  61 ++
 gnu/packages/bioinformatics.scm   | 127 +++-
 gnu/packages/compression.scm  |  27 +-
 gnu/packages/cran.scm | 451 +-
 gnu/packages/crypto.scm   |  53 +-
 gnu/packages/databases.scm|  21 +-
 gnu/packages/datastructures.scm   |  24 +
 gnu/packages/emacs.scm|  32 +-
 gnu/packages/embedded.scm |  13 +-
 gnu/packages/game-development.scm |  11 +-
 gnu/packages/geo.scm  |   4 +-
 gnu/packages/gnustep.scm  |  19 +-
 gnu/packages/gnuzilla.scm |  78 +--
 gnu/packages/golang.scm   |  49 +-
 gnu/packages/gtk.scm  |   8 +-
 gnu/packages/guile.scm|  74 ++-
 gnu/packages/ibus.scm | 683 +-
 gnu/packages/image-viewers.scm|   4 +-
 gnu/packages/imagemagick.scm  |   5 +-
 gnu/packages/linux.scm|  49 +-
 gnu/packages/llvm.scm |  23 +-
 gnu/packages/lxde.scm |   9 +-
 gnu/packages/mail.scm |  52 +-
 gnu/packages/messaging.scm|  62 +-
 gnu/packages/mtools.scm   |   6 +-
 gnu/packages/music.scm| 126 ++--
 gnu/packages/nano.scm |   4 +-
 gnu/packages/package-management.scm   |   6 +-
 gnu/packages/patches/icecat-CVE-2018-12383.patch  | 103 
 gnu/packages/patches/poppler-CVE-2018-19149.patch |  80 +++
 gnu/packages/pdf.scm  |  34 +-
 gnu/packages/php.scm  |   9 +-
 gnu/packages/python.scm   |  19 +
 gnu/packages/rdf.scm  |  20 +-
 gnu/packages/samba.scm|   5 +-
 gnu/packages/serialization.scm|   8 -
 gnu/packages/shells.scm   |   7 +-
 gnu/packages/shellutils.scm   |   5 +-
 gnu/packages/spice.scm|   2 +-
 gnu/packages/ssh.scm  |   8 +-
 gnu/packages/statistics.scm   |  50 +-
 gnu/packages/syncthing.scm|  31 +-
 gnu/packages/telephony.scm|  21 +-
 gnu/packages/textutils.scm|  51 +-
 gnu/packages/tls.scm  |   6 +-
 gnu/packages/tor.scm  |   9 +-
 gnu/packages/video.scm|   4 +-
 gnu/packages/vim.scm  |   4 +-
 gnu/packages/web.scm  |   6 +-
 gnu/packages/webkit.scm   |  46 +-
 gnu/packages/wine.scm |   6 +-
 gnu/packages/xdisorg.scm  |  16 +-
 gnu/packages/xorg.scm |   4 +-
 gnu/services/base.scm |  54 +-
 gnu/services/mail.scm |  51 +-
 gnu/services/mcron.scm|   2 +-
 gnu/tests/base.scm|  14 +
 guix/build/go-build-system.scm|   3 +
 guix/ci.scm   |  74 ++-
 guix/gexp.scm |   7 +-
 guix/gnu-maintenance.scm  | 115 +++-
 guix/grafts.scm   |   8 +-
 guix/nar.scm  |  13 +-
 guix/scripts/package.scm  |  10 +-
 guix/scripts/system.scm   |   7 +
 guix/store.scm|  68 ++-
 guix/store/database.scm   |   6 +
 guix/store/deduplication.scm  |  12 +-
 guix/tests.scm|  34 ++
 tests/challenge.scm   |   8 -
 tests/debug-link.scm  |   8 -
 tests/gexp.scm|   5 -
 tests/guix-package.sh |   4 +
 tests/nar.scm

01/01: Merge branch 'master' into core-updates

2018-11-09 Thread Marius Bakke

mbakke pushed a commit to branch core-updates
in repository guix.

commit 64461ba20a07a0cf3197de3e97cb44e0f66cebdc
Merge: 55174e6 cee9ab2
Author: Marius Bakke 
Date:   Fri Nov 9 17:02:08 2018 +0100

Merge branch 'master' into core-updates

 doc/guix.texi  |   6 +
 gnu/local.mk   |   2 +-
 gnu/packages/bioinformatics.scm| 512 ++---
 gnu/packages/c.scm |   5 +-
 gnu/packages/cups.scm  |   6 +-
 gnu/packages/databases.scm |   4 +-
 gnu/packages/emacs.scm |  75 +++
 gnu/packages/gtk.scm   |  27 ++
 gnu/packages/guile.scm |   6 +-
 gnu/packages/kodi.scm  |  70 ++-
 gnu/packages/maths.scm |  10 +-
 gnu/packages/music.scm |  79 ++--
 .../patches/hplip-remove-imageprocessor.patch  | 232 ++
 .../patches/vsearch-unbundle-cityhash.patch|   6 +-
 ...xmaxima-do-not-use-old-gnuplot-parameters.patch |  26 --
 gnu/packages/python.scm|  29 +-
 gnu/packages/statistics.scm|  17 +-
 gnu/packages/xml.scm   |  38 ++
 gnu/services/desktop.scm   |   8 +-
 guix/scripts/pull.scm  |   2 +-
 20 files changed, 781 insertions(+), 379 deletions(-)

01/01: Merge branch 'master' into core-updates

2018-11-07 Thread Marius Bakke

mbakke pushed a commit to branch core-updates
in repository guix.

commit 55174e668f2985d1c4efda4fbf58f4061dde0db2
Merge: 1badc85 b31e156
Author: Marius Bakke 
Date:   Wed Nov 7 21:09:57 2018 +0100

Merge branch 'master' into core-updates

 Makefile.am|   5 +-
 doc/guix.texi  |  22 +-
 etc/completion/bash/guix   |   4 +-
 .../substitutes/berlin.guixsd.org.pub  |   0
 .../substitutes/hydra.gnu.org.pub  |   0
 gnu/build/install.scm  |  77 +--
 gnu/build/linux-initrd.scm |   8 +-
 gnu/build/vm.scm   |  19 +-
 gnu/local.mk   |   3 +-
 gnu/packages/benchmark.scm |   6 +-
 gnu/packages/bioconductor.scm  | 134 ++--
 gnu/packages/bioinformatics.scm| 761 +++--
 gnu/packages/ci.scm|   6 +-
 gnu/packages/cran.scm  | 156 -
 gnu/packages/gnupg.scm |   4 +-
 gnu/packages/graph.scm |   4 +-
 gnu/packages/guile.scm |  40 +-
 gnu/packages/kodi.scm  |   4 +-
 gnu/packages/libreoffice.scm   |   4 +-
 gnu/packages/maths.scm |  19 +
 gnu/packages/music.scm |   2 +-
 gnu/packages/patches/gemma-intel-compat.patch  |  44 --
 gnu/packages/patches/jq-CVE-2015-8863.patch|  45 --
 gnu/packages/patches/libgit2-oom-test.patch|  62 ++
 gnu/packages/slang.scm |  14 +-
 gnu/packages/statistics.scm|  39 +-
 gnu/packages/syncthing.scm |   4 +-
 gnu/packages/terminals.scm | 178 ++---
 gnu/packages/terraform.scm |  11 +-
 gnu/packages/version-control.scm   |   3 +-
 gnu/packages/video.scm |   8 +-
 gnu/packages/web.scm   |  18 +-
 gnu/packages/xorg.scm  |  52 ++
 gnu/services/base.scm  |  11 +-
 gnu/services/cuirass.scm   |   6 +-
 gnu/services/dns.scm   |   4 +-
 guix/build-system/r.scm|   2 +-
 guix/build/store-copy.scm  |  28 +
 guix/docker.scm|  16 +-
 guix/import/cran.scm   |   4 +-
 guix/scripts/pack.scm  | 415 ++-
 guix/scripts/pull.scm  |  17 +-
 guix/self.scm  |  47 +-
 guix/ssh.scm   |   2 +-
 po/guix/de.po  |  20 +-
 tests/guix-pack-relocatable.sh |  61 ++
 tests/guix-pack.sh |  28 +-
 tests/pack.scm | 156 -
 48 files changed, 1594 insertions(+), 979 deletions(-)

diff --cc gnu/local.mk
index 86f081f,9a8330a..90dbe94
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@@ -836,9 -830,9 +835,8 @@@ dist_patch_DATA =  

%D%/packages/patches/java-xerces-bootclasspath.patch\
%D%/packages/patches/java-xerces-build_dont_unzip.patch \
%D%/packages/patches/java-xerces-xjavac_taskdef.patch   \
 -  %D%/packages/patches/jemalloc-arm-address-bits.patch\
%D%/packages/patches/jbig2dec-ignore-testtest.patch \
%D%/packages/patches/json-glib-fix-tests-32bit.patch\
-   %D%/packages/patches/jq-CVE-2015-8863.patch \
%D%/packages/patches/kdbusaddons-kinit-file-name.patch  \
%D%/packages/patches/khmer-use-libraries.patch\
%D%/packages/patches/libziparchive-add-includes.patch   \
@@@ -880,8 -874,8 +878,9 @@@
%D%/packages/patches/libevent-2.1-skip-failing-test.patch   \
%D%/packages/patches/libexif-CVE-2016-6328.patch\
%D%/packages/patches/libexif-CVE-2017-7544.patch\
 +  %D%/packages/patches/libgcrypt-make-yat2m-reproducible.patch\
%D%/packages/patches/libgit2-mtime-0.patch  \
+   %D%/packages/patches/libgit2-oom-test.patch \
%D%/packages/patches/libgdata-fix-tests.patch   \
%D%/packages/patches/libgdata-glib-duplicate-tests.patch\
%D%/packages/patches/libgnome-encoding.patch\

01/01: Merge branch 'master' into core-updates

2018-10-21 Thread Marius Bakke

mbakke pushed a commit to branch core-updates
in repository guix.

commit ffddb42d6c510456997ee6de1c1b8026c9ce6d14
Merge: e381ae3 3a69b59
Author: Marius Bakke 
Date:   Sun Oct 21 18:06:02 2018 +0200

Merge branch 'master' into core-updates

 .dir-locals.el |1 +
 doc/guix.texi  |   61 +-
 gnu/local.mk   |2 +-
 gnu/packages/audio.scm |   29 +-
 gnu/packages/aux-files/linux-libre/4.18-arm64.conf |4 +-
 gnu/packages/bioinformatics.scm|  318 ++--
 gnu/packages/crypto.scm|   34 +
 gnu/packages/databases.scm |   27 +-
 gnu/packages/emacs.scm |   38 +-
 gnu/packages/games.scm |   16 +-
 gnu/packages/glib.scm  |4 +-
 gnu/packages/gnome.scm |   83 +-
 gnu/packages/java.scm  |   79 +-
 gnu/packages/kodi.scm  |5 +
 gnu/packages/linux.scm |   16 +-
 gnu/packages/lisp.scm  | 2005 +++-
 gnu/packages/mail.scm  |4 +-
 gnu/packages/maths.scm |4 +-
 gnu/packages/music.scm |2 +-
 .../patches/grub-check-error-efibootmgr.patch  |   23 +-
 gnu/packages/patches/libgxps-CVE-2017-11590.patch  |   48 -
 .../patches/libssh-hostname-parser-bug.patch   |   22 +-
 .../soundconverter-remove-gconf-dependency.patch   |   83 +
 gnu/packages/photo.scm |4 +-
 gnu/packages/python.scm|4 +-
 gnu/packages/regex.scm |4 +-
 gnu/packages/ssh.scm   |   64 +-
 gnu/packages/tex.scm   |  245 +++
 gnu/packages/tmux.scm  |4 +-
 gnu/packages/version-control.scm   |4 +-
 gnu/packages/video.scm |4 +-
 gnu/packages/vulkan.scm|8 +-
 gnu/packages/wm.scm|   41 +
 gnu/services/desktop.scm   |4 +-
 gnu/services/networking.scm|   18 +-
 gnu/system/examples/bare-bones.tmpl|2 +-
 gnu/system/examples/beaglebone-black.tmpl  |2 +-
 gnu/system/shadow.scm  |7 +-
 gnu/tests/base.scm |2 +-
 gnu/tests/databases.scm|4 +-
 gnu/tests/dict.scm |2 +-
 gnu/tests/mail.scm |6 +-
 gnu/tests/messaging.scm|4 +-
 gnu/tests/monitoring.scm   |2 +-
 gnu/tests/networking.scm   |4 +-
 gnu/tests/nfs.scm  |2 +-
 gnu/tests/rsync.scm|2 +-
 gnu/tests/ssh.scm  |2 +-
 gnu/tests/version-control.scm  |6 +-
 gnu/tests/virtualization.scm   |2 +-
 gnu/tests/web.scm  |   12 +-
 guix/build-system/python.scm   |2 +-
 guix/gexp.scm  |8 +
 guix/import/pypi.scm   |2 +-
 guix/scripts/pack.scm  |7 +-
 guix/tests.scm |   37 +-
 tests/guix-pack.sh |   30 +-
 tests/guix-system.sh   |4 +-
 tests/pack.scm |   75 +-
 tests/pypi.scm |2 +-
 60 files changed, 3099 insertions(+), 441 deletions(-)

diff --cc gnu/local.mk
index 4b8c4c3,1c48fd3..befe3c4
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@@ -886,7 -882,7 +886,6 @@@ dist_patch_DATA =  

%D%/packages/patches/libgdata-glib-duplicate-tests.patch\
%D%/packages/patches/libgnome-encoding.patch\
%D%/packages/patches/libgnomeui-utf8.patch  \
-   %D%/packages/patches/libgxps-CVE-2017-11590.patch   \
 -  %D%/packages/patches/libgpg-error-aarch64-logging-fix.patch \
%D%/packages/patches/libffi-3.2.1-complex-alpha.patch   \
%D%/packages/patches/libjxr-fix-function-signature.patch\
%D%/packages/patches/libjxr-fix-typos.patch \
@@@ -1148,8 -1148,8 +1147,9 @@@
%D%/packages/patches/slim-sigusr1.patch \
%D%/packages/patches/slim-reset.patch   \
%D%/packages/patches/slim-login.patch

01/01: Merge branch 'master' into core-updates

2018-10-05 Thread Marius Bakke

mbakke pushed a commit to branch core-updates
in repository guix.

commit cf6db76d2af2f287f12928df160447ab4165b3e5
Merge: e65b218 a679821
Author: Marius Bakke 
Date:   Fri Oct 5 19:15:39 2018 +0200

Merge branch 'master' into core-updates

 .dir-locals.el |1 +
 Makefile.am|2 +
 doc/guix.texi  |  110 +-
 gnu/local.mk   |7 +-
 gnu/packages/admin.scm |   11 +-
 gnu/packages/agda.scm  |   51 +-
 gnu/packages/audio.scm |   27 +-
 gnu/packages/aux-files/linux-libre/4.18-i686.conf  |6 +-
 .../aux-files/linux-libre/4.18-x86_64.conf |6 +-
 gnu/packages/bioinformatics.scm|  219 +-
 gnu/packages/ci.scm|6 +-
 gnu/packages/code.scm  |   13 +-
 gnu/packages/cran.scm  |  361 
 gnu/packages/cups.scm  |   10 +-
 gnu/packages/databases.scm |   14 +-
 gnu/packages/dico.scm  |   11 +-
 gnu/packages/dictionaries.scm  |3 +-
 gnu/packages/disk.scm  |5 +-
 gnu/packages/dns.scm   |   75 +-
 gnu/packages/emacs.scm |  124 +-
 gnu/packages/embedded.scm  |   39 +
 gnu/packages/emulators.scm |   17 +-
 gnu/packages/enlightenment.scm |   29 +-
 gnu/packages/file-systems.scm  |4 +-
 gnu/packages/fonts.scm |4 +-
 gnu/packages/freedesktop.scm   |4 +-
 gnu/packages/game-development.scm  |   17 +-
 gnu/packages/games.scm |   81 +-
 gnu/packages/geo.scm   |  230 ++-
 gnu/packages/gnome.scm |6 +-
 gnu/packages/gnuzilla.scm  |   98 +-
 gnu/packages/golang.scm|4 +-
 gnu/packages/graph.scm |1 +
 gnu/packages/gtk.scm   |   58 +-
 gnu/packages/guile.scm |   16 +-
 gnu/packages/hardware.scm  |  114 +-
 gnu/packages/haskell-check.scm |  107 +-
 gnu/packages/haskell-crypto.scm|  127 +-
 gnu/packages/haskell-web.scm   |  169 +-
 gnu/packages/haskell.scm   | 2177 
 gnu/packages/hexedit.scm   |   23 +-
 gnu/packages/idris.scm |   62 +-
 gnu/packages/image-processing.scm  |8 +-
 gnu/packages/java.scm  |  128 ++
 gnu/packages/kde.scm   |4 +-
 gnu/packages/libreoffice.scm   |   10 +-
 gnu/packages/license.scm   |4 +-
 gnu/packages/linux.scm |   47 +-
 gnu/packages/mail.scm  |   15 +-
 gnu/packages/maths.scm |   17 +-
 gnu/packages/messaging.scm |4 +-
 gnu/packages/mpi.scm   |5 +-
 gnu/packages/mtools.scm|5 +-
 gnu/packages/music.scm |4 +-
 gnu/packages/networking.scm|8 +-
 gnu/packages/nickle.scm|4 +-
 gnu/packages/opencl.scm|8 +-
 gnu/packages/package-management.scm|   38 +-
 .../patches/ghc-haddock-library-unbundle.patch |   86 +
 .../patches/icecat-avoid-bundled-libraries.patch   |   14 +
 .../icecat-use-system-graphite2+harfbuzz.patch |  226 ++
 .../patches/icecat-use-system-graphite2.patch  |  248 ---
 .../patches/icecat-use-system-harfbuzz.patch   |  279 ---
 .../patches/icecat-use-system-media-libs.patch |  381 
 ...pat-getopt-fix-option-with-nondigit-param.patch |   45 +
 .../quilt-compat-getopt-fix-second-separator.patch |   58 +
 gnu/packages/patches/quilt-test-fix-regex.patch|   41 +
 gnu/packages/patchutils.scm|   22 +-
 gnu/packages/python.scm|2 +-
 gnu/packages/re2c.scm  |5 +-
 gnu/packages/sdl.scm   |   92 +
 gnu/packages/syncthing.scm |   62 +-
 gnu/packages/syndication.scm   |4 +-
 gnu/packages/textutils.scm |4 +-
 gnu/packages/tls.scm   |   36 +-
 gnu/packages/version-control.scm   |   61 +-
 gnu/packages/video.scm

01/01: Merge branch 'master' into core-updates

2018-09-20 Thread Marius Bakke

mbakke pushed a commit to branch core-updates
in repository guix.

commit 2817ac3c18c1b1a6291c052bc61edd0947890a82
Merge: ecd1301 3e12df7
Author: Marius Bakke 
Date:   Thu Sep 20 13:37:58 2018 +0200

Merge branch 'master' into core-updates

 build-aux/hydra/gnu-system.scm |  11 +-
 doc/guix.texi  |  85 +
 gnu/bootloader/u-boot.scm  |   6 +-
 gnu/local.mk   |   3 +-
 gnu/packages/admin.scm |  10 +-
 gnu/packages/bioinformatics.scm|  24 +++
 gnu/packages/bootloaders.scm   |   4 +-
 gnu/packages/busybox.scm   |   4 +-
 gnu/packages/cdrom.scm |  12 +-
 gnu/packages/cinnamon.scm  |  10 +-
 gnu/packages/cran.scm  |  78 
 gnu/packages/cups.scm  |   4 +-
 gnu/packages/electronics.scm   |   4 +-
 gnu/packages/emacs.scm |  36 +++-
 gnu/packages/enlightenment.scm |   8 +-
 gnu/packages/games.scm |   6 +-
 gnu/packages/gnome.scm |   6 +-
 gnu/packages/golang.scm|   4 +-
 gnu/packages/guile.scm |  27 +++
 gnu/packages/image-viewers.scm |   4 +-
 gnu/packages/image.scm |  17 +-
 gnu/packages/libreoffice.scm   |  16 +-
 gnu/packages/linux.scm |  16 +-
 gnu/packages/lisp.scm  | 114 ++--
 gnu/packages/llvm.scm  |  10 +-
 gnu/packages/mail.scm  |  15 +-
 gnu/packages/maths.scm |  37 ++--
 gnu/packages/mpd.scm   |  20 +-
 gnu/packages/mtools.scm|   4 +-
 gnu/packages/nutrition.scm |   7 +-
 gnu/packages/ocaml.scm |  33 ++--
 ...hash-in.patch => openssl-1.1-c-rehash-in.patch} |   6 +-
 .../patches/xf86-video-ast-remove-mibstore.patch   |  90 -
 gnu/packages/perl.scm  |  24 +++
 gnu/packages/php.scm   |   5 +-
 gnu/packages/python.scm| 111 ++--
 gnu/packages/rails.scm |  14 +-
 gnu/packages/ruby.scm  | 201 -
 gnu/packages/rust.scm  |  17 +-
 gnu/packages/scheme.scm|  19 +-
 gnu/packages/scsi.scm  |  31 ++--
 gnu/packages/security-token.scm|  10 +-
 gnu/packages/shells.scm|  24 +--
 gnu/packages/telephony.scm |  46 ++---
 gnu/packages/time.scm  |   4 +-
 gnu/packages/tls.scm   |  34 +++-
 gnu/packages/version-control.scm   |   7 +
 gnu/packages/video.scm |  14 +-
 gnu/packages/virtualization.scm|   4 +-
 gnu/packages/wine.scm  |  10 +-
 gnu/packages/xdisorg.scm   |  16 +-
 gnu/packages/xiph.scm  |   4 +-
 gnu/packages/xorg.scm  |  48 +++--
 gnu/services/base.scm  |  45 ++---
 gnu/services/networking.scm|  56 +-
 gnu/system/install.scm |   6 +-
 gnu/tests/networking.scm   | 129 -
 guix/build/lisp-utils.scm  |  63 ---
 guix/channels.scm  |  16 +-
 guix/git-download.scm  |  36 ++--
 guix/git.scm   |   3 +-
 guix/gnupg.scm |  58 --
 guix/scripts/describe.scm  |   6 +-
 guix/scripts/graph.scm |  12 +-
 guix/scripts/pull.scm  |  35 ++--
 guix/scripts/refresh.scm   |  13 +-
 guix/store.scm |   3 +
 tests/pack.scm |   7 +-
 68 files changed, 1302 insertions(+), 560 deletions(-)

diff --cc gnu/local.mk
index 6a48782,0ead43a..c10894c
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@@ -1012,7 -1009,9 +1012,7 @@@ dist_patch_DATA =   

%D%/packages/patches/openocd-nrf52.patch\
%D%/packages/patches/opensmtpd-fix-crash.patch  \
%D%/packages/patches/openssl-runpath.patch  \
-   %D%/packages/patches/openssl-1.1.0-c-rehash-in.pa

01/01: Merge branch 'master' into core-updates

2018-08-01 Thread Marius Bakke

mbakke pushed a commit to branch core-updates
in repository guix.

commit 4214066d45ec7030405577f225a9db0be04da1fd
Merge: 07ca716 ae66fda
Author: Marius Bakke 
Date:   Wed Aug 1 15:53:17 2018 +0200

Merge branch 'master' into core-updates

 doc/guix.texi  |  32 +-
 gnu/build/linux-modules.scm|  36 +++
 gnu/local.mk   |   6 +-
 gnu/packages/agda.scm  |  30 ++
 gnu/packages/android.scm   | 106 +-
 gnu/packages/base.scm  |  17 +
 gnu/packages/bioinformatics.scm|  68 ++--
 gnu/packages/bootloaders.scm   |   5 +-
 gnu/packages/c.scm |  55 
 gnu/packages/check.scm |  26 +-
 gnu/packages/ci.scm|   4 +-
 gnu/packages/cran.scm  |  35 +-
 gnu/packages/databases.scm |  28 +-
 gnu/packages/disk.scm  | 198 +++-
 gnu/packages/docker.scm|  43 ++-
 gnu/packages/elf.scm   |   4 +-
 gnu/packages/emacs.scm | 125 ---
 gnu/packages/finance.scm   |  41 ++-
 gnu/packages/fonts.scm |  31 +-
 gnu/packages/freedesktop.scm   |  38 ++-
 gnu/packages/game-development.scm  |  28 +-
 gnu/packages/games.scm |  87 +++--
 gnu/packages/gcc.scm   |   4 +-
 gnu/packages/gnome.scm |  69 ++--
 gnu/packages/haskell.scm   |  45 ---
 gnu/packages/image.scm |  31 +-
 gnu/packages/imagemagick.scm   |   4 +-
 gnu/packages/java.scm  |   5 +
 gnu/packages/libreoffice.scm   |  13 +-
 gnu/packages/linux.scm |  34 +-
 gnu/packages/maths.scm |  16 +-
 gnu/packages/messaging.scm |  29 +-
 gnu/packages/parallel.scm  |   6 +-
 gnu/packages/patches/libreoffice-glm.patch |  58 
 gnu/packages/patches/lvm2-static-link.patch|  11 +
 gnu/packages/patches/mariadb-gcc-ice.patch |  24 ++
 .../patches/python-dendropy-fix-tests.patch|  41 ---
 .../patches/qtwebkit-pbutils-include.patch |  15 +
 gnu/packages/patches/x265-arm-asm-primitives.patch | 360 +
 gnu/packages/patches/xdotool-fix-makefile.patch|  16 -
 gnu/packages/perl.scm  |  24 --
 gnu/packages/python.scm|  75 +++--
 gnu/packages/qt.scm| 100 ++
 gnu/packages/regex.scm |   4 +-
 gnu/packages/sdl.scm   |  15 +-
 gnu/packages/search.scm|   6 +-
 gnu/packages/ssh.scm   |   4 +-
 gnu/packages/tls.scm   |   4 +-
 gnu/packages/version-control.scm   |   6 +-
 gnu/packages/video.scm |   8 +-
 gnu/packages/virtualization.scm|  53 ++-
 gnu/packages/xdisorg.scm   |  41 ++-
 gnu/services/ssh.scm   |  22 ++
 gnu/system/linux-initrd.scm|  26 +-
 gnu/system/mapped-devices.scm  |  29 +-
 guix/import/cabal.scm  |  15 +-
 guix/import/hackage.scm|  53 ++-
 guix/ssh.scm   |  11 +-
 58 files changed, 1681 insertions(+), 639 deletions(-)

01/01: Merge branch 'master' into core-updates

2018-07-24 Thread Marius Bakke

mbakke pushed a commit to branch core-updates
in repository guix.

commit 706ae8e15c8d36b0aee7c19c54c143d3e17f5784
Merge: 3e95125 8440db4
Author: Marius Bakke 
Date:   Tue Jul 24 19:56:35 2018 +0200

Merge branch 'master' into core-updates

 .mailmap   |2 +
 HACKING|2 +-
 Makefile.am|   12 +-
 NEWS   | 1066 ++-
 doc/contributing.texi  |7 +-
 doc/guix.texi  |  305 +-
 doc/htmlxref.cnf   |6 +-
 etc/completion/bash/guix   |   12 +
 etc/snippets/scheme-mode/guix-package  |4 +-
 .../guix-commit-message-use-https-home-page|9 +
 gnu/build/vm.scm   |8 +-
 gnu/local.mk   |   40 +-
 gnu/packages/admin.scm |8 +-
 gnu/packages/algebra.scm   |   19 +-
 gnu/packages/aspell.scm|   18 +-
 gnu/packages/astronomy.scm |6 +-
 gnu/packages/audio.scm |4 +-
 gnu/packages/aux-files/linux-libre/4.1-i686.conf   | 8316 
 gnu/packages/aux-files/linux-libre/4.1-x86_64.conf | 8116 ---
 gnu/packages/base.scm  |   28 +-
 gnu/packages/bioconductor.scm  |  129 +-
 gnu/packages/bioinformatics.scm|  103 +-
 gnu/packages/bittorrent.scm|4 +-
 gnu/packages/bootloaders.scm   |   18 +-
 gnu/packages/build-tools.scm   |4 +-
 gnu/packages/busybox.scm   |   13 +-
 gnu/packages/cdrom.scm |   28 +-
 gnu/packages/certs.scm |4 +-
 gnu/packages/chemistry.scm |  125 +
 gnu/packages/ci.scm|7 +-
 gnu/packages/cluster.scm   |4 +-
 gnu/packages/commencement.scm  |3 +
 gnu/packages/compression.scm   |   51 +-
 gnu/packages/cran.scm  |  159 +-
 gnu/packages/crypto.scm|  117 +-
 gnu/packages/curl.scm  |8 +-
 gnu/packages/databases.scm |   13 +-
 gnu/packages/dav.scm   |   40 +-
 gnu/packages/debian.scm|   15 +-
 gnu/packages/dictionaries.scm  |4 +-
 gnu/packages/digest.scm|   16 +-
 gnu/packages/disk.scm  |4 +-
 gnu/packages/display-managers.scm  |9 +-
 gnu/packages/dns.scm   |  101 +-
 gnu/packages/dunst.scm |2 +-
 gnu/packages/ebook.scm |4 +-
 gnu/packages/elixir.scm|6 +-
 gnu/packages/emacs.scm |  651 +-
 gnu/packages/embedded.scm  |   11 +-
 gnu/packages/emulators.scm |   26 +-
 gnu/packages/engineering.scm   |   18 +-
 gnu/packages/erlang.scm|7 +-
 gnu/packages/finance.scm   |  220 +-
 gnu/packages/fltk.scm  |   26 +-
 gnu/packages/fontutils.scm |   31 +-
 gnu/packages/fpga.scm  |8 +-
 gnu/packages/freedesktop.scm   |   11 +-
 gnu/packages/ftp.scm   |   41 +-
 gnu/packages/game-development.scm  |   87 +-
 gnu/packages/games.scm |  336 +-
 gnu/packages/gcc.scm   |2 +-
 gnu/packages/geo.scm   |2 +-
 gnu/packages/ghostscript.scm   |   11 +
 gnu/packages/gimp.scm  |   18 +-
 gnu/packages/gl.scm|   29 +-
 gnu/packages/glib.scm  |4 +-
 gnu/packages/gnome.scm |   57 +-
 gnu/packages/gnu-pw-mgr.scm|4 +-
 gnu/packages/gnunet.scm|4 +-
 gnu/packages/gnupg.scm |4 +-
 gnu/packages/gnuzilla.scm  |4 +-
 gnu/packages/golang.scm|  565 ++
 gnu/packages/gps.scm   |6 +-
 gnu/packages/graphics.scm  |   92 +-
 gnu/packages/graphviz.scm  |4 +-
 gnu/packages/gtk.scm   |   21 +-
 gnu/package

01/01: Merge branch 'master' into core-updates

2018-06-29 Thread Ricardo Wurmus

rekado pushed a commit to branch core-updates
in repository guix.

commit f1728d43460e63b106dd446e70001d8e100eaf6d
Merge: cda7f4b 373cc3b
Author: Ricardo Wurmus 
Date:   Fri Jun 29 22:51:23 2018 +0200

Merge branch 'master' into core-updates

 .gitignore | 2 +-
 Makefile.am|28 +-
 NEWS   |26 +-
 README | 3 +-
 build-aux/build-self.scm   |   126 +-
 build-aux/compile-as-derivation.scm| 5 +-
 build-aux/hydra/gnu-system.scm | 3 +-
 build-aux/hydra/guix-modular.scm   | 1 +
 build-aux/pre-inst-env.in  | 6 +-
 configure.ac   |14 +-
 doc/contributing.fr.texi   |   191 +-
 doc/contributing.texi  |21 +-
 doc/guix.fr.texi   |  6439 ++--
 doc/guix.texi  |   239 +-
 etc/completion/bash/guix-daemon|30 +
 gnu/bootloader/grub.scm|10 +-
 gnu/build/install.scm  |59 +-
 gnu/build/linux-modules.scm| 1 +
 gnu/build/vm.scm   |   104 +-
 gnu/local.mk   |37 +-
 gnu/packages/admin.scm |   207 +-
 gnu/packages/aidc.scm  | 5 +-
 gnu/packages/algebra.scm   |10 +-
 gnu/packages/animation.scm |17 +-
 gnu/packages/astronomy.scm | 4 +-
 gnu/packages/audio.scm |43 +-
 gnu/packages/backup.scm|   193 +-
 gnu/packages/base.scm  |11 +
 gnu/packages/benchmark.scm |10 +-
 gnu/packages/bioconductor.scm  |   308 +-
 gnu/packages/bioinformatics.scm|   174 +-
 gnu/packages/bootloaders.scm   |25 +-
 gnu/packages/busybox.scm   |20 +-
 gnu/packages/check.scm |19 +-
 gnu/packages/cluster.scm   |81 +
 gnu/packages/code.scm  | 6 +-
 gnu/packages/compression.scm   |77 +-
 gnu/packages/cran.scm  |   421 +-
 gnu/packages/crypto.scm|27 +-
 gnu/packages/cups.scm  |75 +-
 gnu/packages/databases.scm |12 +-
 gnu/packages/dav.scm   | 5 +-
 gnu/packages/debian.scm| 5 +-
 gnu/packages/dns.scm   |19 +-
 gnu/packages/documentation.scm |15 +-
 gnu/packages/electronics.scm   | 5 +-
 gnu/packages/elf.scm   | 4 +-
 gnu/packages/elixir.scm|36 +-
 gnu/packages/emacs.scm |   931 +-
 gnu/packages/emulators.scm |   192 +
 gnu/packages/engineering.scm   |   268 +-
 gnu/packages/enlightenment.scm | 4 +-
 gnu/packages/erlang.scm|24 +
 gnu/packages/fcitx.scm |18 +-
 gnu/packages/file-systems.scm  |11 +-
 gnu/packages/firmware.scm  |97 +-
 gnu/packages/fltk.scm  |19 +-
 gnu/packages/fonts.scm |24 +-
 gnu/packages/fontutils.scm |18 +-
 gnu/packages/fpga.scm  | 4 +-
 gnu/packages/freedesktop.scm   | 7 +-
 gnu/packages/ftp.scm   | 4 +-
 gnu/packages/game-development.scm  |40 +-
 gnu/packages/games.scm |   369 +-
 gnu/packages/gcc.scm   |15 +
 gnu/packages/geo.scm   | 4 +-
 gnu/packages/gettext.scm   |16 +-
 gnu/packages/gimp.scm  |14 +-
 gnu/packages/gnome.scm |49 +-
 gnu/packages/gnu-pw-mgr.scm|14 +-
 gnu/packages/gnupg.scm |32 +-
 gnu/packages/gnuzilla.scm  |52 +-
 gnu/packages/golang.scm|   188 +-
 gnu/packages/gps.scm   | 2 +-
 gnu/packages/graphics.scm  | 4 +-
 gnu/packages/groovy.scm

01/01: Merge branch 'master' into core-updates

2018-06-06 Thread Ricardo Wurmus

rekado pushed a commit to branch core-updates
in repository guix.

commit 116ca65b583ba4e404289f1481dc3a3ffef1c3dd
Merge: 477ee22 25133ca
Author: Ricardo Wurmus 
Date:   Wed Jun 6 22:43:37 2018 +0200

Merge branch 'master' into core-updates

 gnu/packages/admin.scm  | 23 +++---
 gnu/packages/astronomy.scm  | 25 +---
 gnu/packages/crypto.scm |  9 +++---
 gnu/packages/databases.scm  |  4 +--
 gnu/packages/debian.scm |  4 +--
 gnu/packages/emulators.scm  |  8 ++---
 gnu/packages/engineering.scm| 30 ---
 gnu/packages/games.scm  | 12 
 gnu/packages/gnome.scm  | 16 +-
 gnu/packages/package-management.scm |  4 +--
 gnu/packages/photo.scm  |  4 +--
 gnu/packages/ruby.scm   | 17 ++-
 gnu/packages/scribus.scm| 60 -
 gnu/packages/syncthing.scm  | 10 +++
 gnu/packages/video.scm  |  6 ++--
 gnu/packages/vulkan.scm |  8 ++---
 gnu/packages/web-browsers.scm   |  5 ++--
 gnu/packages/web.scm| 39 ++--
 gnu/packages/wine.scm   |  2 +-
 gnu/packages/xdisorg.scm| 32 ++--
 20 files changed, 126 insertions(+), 192 deletions(-)

diff --cc gnu/packages/syncthing.scm
index b650bed,1da0ace..f43c517
--- a/gnu/packages/syncthing.scm
+++ b/gnu/packages/syncthing.scm
@@@ -37,12 -37,11 +37,12 @@@
"/syncthing-source-v" version ".tar.gz"))
(sha256
 (base32
- "1wz6cwq3la5676z1c20sh4fykmjwhs410xzcnb2jfyzaldf57cwj"))
+ "0bxkm5jlj6l4gai23bg0y31brr80r9qllh1rdg29pahjn0c2b4ml"))
(modules '((guix build utils)))
;; Delete bundled ("vendored") free software source code.
 -  (snippet
 -'(delete-file-recursively "vendor"
 +  (snippet '(begin
 +  (delete-file-recursively "vendor")
 +  #t
  (build-system go-build-system)
  ;; The primary Syncthing executable goes to "out", while the auxiliary
  ;; server programs and utility tools go to "utils".  This reduces the size

01/01: Merge branch 'master' into core-updates

2018-06-05 Thread Ricardo Wurmus

rekado pushed a commit to branch core-updates
in repository guix.

commit ca8de35e9060f0c8cdf4bb5cc2a3313e730af30d
Merge: 396aab8 42639cc
Author: Ricardo Wurmus 
Date:   Tue Jun 5 23:44:11 2018 +0200

Merge branch 'master' into core-updates

 Makefile.am|   8 +-
 doc/guix.texi  |  59 +++-
 .../linux-libre/{4.16-arm.conf => 4.17-arm.conf}   | 342 +
 .../{4.16-arm64.conf => 4.17-arm64.conf}   | 265 
 .../linux-libre/{4.16-i686.conf => 4.17-i686.conf} | 302 ++
 .../{4.16-x86_64.conf => 4.17-x86_64.conf} | 303 +++---
 gnu/packages/bioinformatics.scm|  51 +++
 gnu/packages/linux.scm |  12 +-
 gnu/packages/music.scm |  22 +-
 gnu/services/dns.scm   |  79 -
 10 files changed, 698 insertions(+), 745 deletions(-)

01/01: Merge branch 'master' into core-updates

2018-06-05 Thread Ricardo Wurmus

rekado pushed a commit to branch core-updates
in repository guix.

commit d7e6fb6d7ebdd5b700b2a89b3902904fe459abdf
Merge: 66ece08 71c495c
Author: Ricardo Wurmus 
Date:   Tue Jun 5 11:09:39 2018 +0200

Merge branch 'master' into core-updates

 gnu/packages/bioinformatics.scm | 12 ++--
 gnu/packages/cran.scm   | 12 ++--
 gnu/packages/statistics.scm |  4 ++--
 3 files changed, 14 insertions(+), 14 deletions(-)

01/01: Merge branch 'master' into core-updates

2018-06-05 Thread Ricardo Wurmus

rekado pushed a commit to branch core-updates
in repository guix.

commit 66ece08d05825aaa52404b43b5083a0895d284be
Merge: 8b71684 0ebef06
Author: Ricardo Wurmus 
Date:   Tue Jun 5 09:59:27 2018 +0200

Merge branch 'master' into core-updates

 gnu/packages/admin.scm  | 32 ++---
 gnu/packages/audio.scm  | 10 +++---
 gnu/packages/compression.scm|  2 +-
 gnu/packages/disk.scm   | 20 ++-
 gnu/packages/fvwm.scm   |  4 +--
 gnu/packages/lxqt.scm   |  7 ++--
 gnu/packages/mail.scm   |  1 +
 gnu/packages/music.scm  |  7 ++--
 gnu/packages/nano.scm   |  4 +--
 gnu/packages/pdf.scm|  4 +--
 gnu/packages/perl-check.scm |  4 +--
 gnu/packages/perl.scm   | 76 +
 gnu/packages/python-web.scm |  4 +--
 gnu/packages/security-token.scm | 14 
 gnu/packages/suckless.scm   |  4 +--
 gnu/packages/tls.scm|  4 +--
 guix/build-system/r.scm |  2 +-
 17 files changed, 107 insertions(+), 92 deletions(-)

01/01: Merge branch 'master' into core-updates

2018-06-04 Thread Ricardo Wurmus

rekado pushed a commit to branch core-updates
in repository guix.

commit 32da38d5721663a470b335f86b67cffdc4f34f0a
Merge: 0c0431f c0e7a52
Author: Ricardo Wurmus 
Date:   Mon Jun 4 11:25:48 2018 +0200

Merge branch 'master' into core-updates

 gnu/local.mk   |  1 +
 gnu/packages/education.scm | 11 -
 gnu/packages/irc.scm   |  3 +-
 gnu/packages/password-utils.scm| 14 +-
 gnu/packages/patches/quassel-qt-5.11.patch | 72 ++
 gnu/packages/qt.scm| 16 ---
 gnu/packages/w3m.scm   |  7 ++-
 7 files changed, 113 insertions(+), 11 deletions(-)

01/01: Merge branch 'master' into core-updates

2018-06-03 Thread Mark H. Weaver

mhw pushed a commit to branch core-updates
in repository guix.

commit 0c0431f9ce32a64ca663a2c5fc6656cbb86dc245
Merge: f52ef55 2c79022
Author: Mark H Weaver 
Date:   Sun Jun 3 03:36:47 2018 -0400

Merge branch 'master' into core-updates

 gnu/packages/emacs.scm | 179 +
 gnu/packages/rust.scm  |  23 +--
 gnu/packages/vim.scm   |  12 ++--
 guix/self.scm  |  18 +++--
 4 files changed, 211 insertions(+), 21 deletions(-)

01/01: Merge branch 'master' into core-updates

2018-06-02 Thread Ricardo Wurmus

rekado pushed a commit to branch core-updates
in repository guix.

commit e0f897035779f3344dc2553aa10f3a4465d290e3
Merge: a13c1bf 9296379
Author: Ricardo Wurmus 
Date:   Sat Jun 2 13:44:43 2018 +0200

Merge branch 'master' into core-updates

 gnu/packages/bioconductor.scm   |  51 +++--
 gnu/packages/bioinformatics.scm | 473 
 gnu/packages/emacs.scm  |   4 +-
 gnu/packages/graph.scm  |   4 +-
 gnu/packages/statistics.scm |  33 ++-
 guix/import/cran.scm|   4 +-
 guix/self.scm   |  44 ++--
 7 files changed, 318 insertions(+), 295 deletions(-)

01/01: Merge branch 'master' into core-updates

2018-06-01 Thread Ludovic Courtï¿½

civodul pushed a commit to branch core-updates
in repository guix.

commit a13c1bf4ca0b15fa53235c2bd6aa53e4a75c7d0f
Merge: babeea3 1a3e316
Author: Ludovic CourtÃ¨s 
Date:   Fri Jun 1 23:41:40 2018 +0200

Merge branch 'master' into core-updates

 .dir-locals.el |   3 +
 Makefile.am|  19 ++
 configure.ac   |   5 +
 doc/guix.texi  |  94 ++-
 gnu/bootloader/grub.scm|  19 +-
 gnu/build/file-systems.scm |   4 +-
 gnu/build/marionette.scm   |  27 ++
 gnu/build/svg.scm  |  11 +-
 gnu/local.mk   |   1 +
 gnu/packages/build-tools.scm   |   2 +
 gnu/packages/display-managers.scm  |   4 +-
 gnu/packages/emacs.scm | 205 ++-
 gnu/packages/gnuzilla.scm  |  12 +-
 gnu/packages/haskell.scm   | 160 
 gnu/packages/messaging.scm |   4 +-
 .../patches/sddm-fix-build-with-qt-5.11-1024.patch |  28 ++
 gnu/packages/python.scm|  23 ++
 gnu/packages/qt.scm|  10 +
 gnu/packages/rust.scm  |  62 +++--
 gnu/packages/version-control.scm   | 129 +
 gnu/packages/web.scm   |  81 ++
 gnu/services/web.scm   |  72 -
 gnu/system.scm |   4 +-
 gnu/system/vm.scm  |  95 ---
 gnu/tests/dict.scm |  19 +-
 gnu/tests/ssh.scm  | 290 ++---
 gnu/tests/web.scm  |  82 +-
 guix/config.scm.in |   6 +
 guix/docker.scm|   6 +-
 guix/gexp.scm  | 196 +++---
 guix/man-db.scm|   6 +-
 guix/profiles.scm  |  68 +++--
 guix/records.scm   |  31 ++-
 guix/scripts/pack.scm  |  41 ++-
 guix/scripts/system.scm|   8 +-
 guix/self.scm  |  25 +-
 guix/store/database.scm| 234 +
 guix/store/deduplication.scm   | 148 +++
 m4/guix.m4 |  18 ++
 tests/gexp.scm |  86 ++
 tests/pack.scm |  12 +-
 tests/store-database.scm   |  54 
 tests/store-deduplication.scm  |  64 +
 43 files changed, 1993 insertions(+), 475 deletions(-)

diff --cc guix/gexp.scm
index c6d70e4,338c339..153b29b
--- a/guix/gexp.scm
+++ b/guix/gexp.scm
@@@ -1075,8 -1120,14 +1120,16 @@@ last one is created from the given )
 (scandir directory regular?
 - (for-each (lambda (entry)
 - (if (file-is-directory? entry)
 - (let ((output (string-append output "/"
 -  (basename entry
 -   (mkdir-p output)
 -   (process-directory entry output))
 - (let* ((base   (string-drop-right
 - (basename entry)
 - 4)) ;.scm
 -(output (string-append output "/" base
 -   ".go")))
 -   (compile-file entry
 - #:output-file output
 - #:opts
 - %auto-compilation-options
 -   entries)))
 + (fold (cut process-entry <> output <>)
 +   processed
 +   entries)))
 +
 + (setvbuf (current-output-port)
 +  (cond-expand (guile-2.2 'line) (else _IOLBF)))
  
+  (ungexp-splicing
+   (if build-utils-hack?
+   (gexp ((define mkdir-p
+;; Capture 'mkdir-p'.
+(@ (guix build utils) mkdir-p
+   '()))
+ 
+  ;; Add EXTENSIONS to the search path.
+  ;; TODO: Remove the outer 'ungexp-splicing' on the next rebuild 
cycle.
+  (ungexp-splicing
+   (if (null? extensions)
+   '()
+   (gexp ((set! %load-path
+

01/01: Merge branch 'master' into core-updates

2018-05-30 Thread Mark H. Weaver

mhw pushed a commit to branch core-updates
in repository guix.

commit 0d6f84aab1c2f4cd8ce1b68215a7a77426dc6cd5
Merge: 03d9031 88a3465
Author: Mark H Weaver 
Date:   Thu May 31 00:27:03 2018 -0400

Merge branch 'master' into core-updates

 gnu/packages/calendar.scm   | 25 +++---
 gnu/packages/disk.scm   | 11 +++---
 gnu/packages/dns.scm|  4 +--
 gnu/packages/education.scm  |  3 +-
 gnu/packages/games.scm  | 15 +
 gnu/packages/linux.scm  | 61 -
 gnu/packages/mail.scm   |  3 +-
 gnu/packages/networking.scm |  3 +-
 gnu/packages/openstack.scm  |  4 +--
 gnu/packages/perl.scm   |  4 +--
 gnu/packages/scribus.scm| 15 +
 gnu/packages/search.scm | 15 +
 gnu/packages/skarnet.scm|  8 ++---
 gnu/packages/statistics.scm |  7 ++--
 gnu/packages/suckless.scm   | 82 ++---
 gnu/packages/terminals.scm  |  9 +++--
 gnu/packages/video.scm  |  6 ++--
 gnu/packages/web.scm| 52 ++--
 18 files changed, 195 insertions(+), 132 deletions(-)

01/01: Merge branch 'master' into core-updates

2018-05-29 Thread Mark H. Weaver

mhw pushed a commit to branch core-updates
in repository guix.

commit 341a36b32cf3525061ee6f96f8cbbcbe7a64848a
Merge: b3e23b0 a21bcd7
Author: Mark H Weaver 
Date:   Wed May 30 02:21:29 2018 -0400

Merge branch 'master' into core-updates

 gnu/local.mk   |1 -
 gnu/packages/linux.scm |4 +-
 gnu/packages/patches/swig-octave-patches.patch | 1119 
 gnu/packages/swig.scm  |5 +-
 gnu/packages/xorg.scm  |5 +-
 5 files changed, 6 insertions(+), 1128 deletions(-)

01/01: Merge branch 'master' into core-updates

2018-05-29 Thread Mark H. Weaver

mhw pushed a commit to branch core-updates
in repository guix.

commit c0d7c1244a031c94062762db991b7ba7dc34b583
Merge: e5bbfc7 f274f07
Author: Mark H Weaver 
Date:   Tue May 29 21:20:47 2018 -0400

Merge branch 'master' into core-updates

 CODE-OF-CONDUCT|  111 ++-
 gnu/local.mk   |1 +
 gnu/packages/admin.scm |4 +-
 gnu/packages/algebra.scm   |5 +-
 gnu/packages/engineering.scm   |1 +
 gnu/packages/file-systems.scm  |   10 +-
 gnu/packages/freedesktop.scm   |4 +-
 gnu/packages/game-development.scm  |4 +-
 gnu/packages/golang.scm|  150 
 gnu/packages/machine-learning.scm  |  123 ++-
 gnu/packages/mail.scm  |4 +-
 gnu/packages/maths.scm |4 +-
 gnu/packages/mpd.scm   |4 +-
 gnu/packages/networking.scm|4 +-
 gnu/packages/patches/swig-octave-patches.patch | 1119 
 gnu/packages/swig.scm  |5 +-
 gnu/packages/version-control.scm   |6 +-
 gnu/system/vm.scm  |1 -
 18 files changed, 1457 insertions(+), 103 deletions(-)

diff --cc gnu/packages/machine-learning.scm
index fb511b4,e135ee0..e6f7a18
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@@ -408,9 -410,20 +410,21 @@@ sample proximities between pairs of cas
 (and skipping? (not skip-next?)))
 (display line out))
   (loop (read-line in 'concat) skip-next?)))
-(for-each delete-ifdefs (find-files "src/shogun/kernel/"
-"^Kernel\\.(cpp|h)"))
+(for-each delete-ifdefs
+  (append
+   (find-files "src/shogun/classifier/mkl"
+   "^MKLClassification\\.cpp")
+   (find-files "src/shogun/classifier/svm"
+   "^SVMLightOneClass\\.(cpp|h)")
+   (find-files "src/shogun/multiclass"
+   "^ScatterSVM\\.(cpp|h)")
+   (find-files "src/shogun/kernel/"
+   
"^(Kernel|CombinedKernel|ProductKernel)\\.(cpp|h)")
+   (find-files "src/shogun/regression/svr"
+   "^(MKLRegression|SVRLight)\\.(cpp|h)")
+   (find-files "src/shogun/transfer/domain_adaptation"
 -  "^DomainAdaptationSVM\\.(cpp|h)")))
++  "^DomainAdaptationSVM\\.(cpp|h)")))
 +   #t
  (build-system cmake-build-system)
  (arguments
   '(#:tests? #f ;no check target

01/01: Merge branch 'master' into core-updates

2018-05-29 Thread Ricardo Wurmus

rekado pushed a commit to branch core-updates
in repository guix.

commit b347317ae67c80d9ff3baca42aaab45002fc73e6
Merge: 82b695b 6cedd61
Author: Ricardo Wurmus 
Date:   Tue May 29 15:41:06 2018 +0200

Merge branch 'master' into core-updates

 NEWS   |  5 ++
 gnu/bootloader/u-boot.scm  | 16 ++
 gnu/packages/bootloaders.scm   | 33 +++-
 gnu/packages/calendar.scm  |  4 +-
 gnu/packages/emacs.scm | 31 ++-
 gnu/packages/engineering.scm   |  7 +++
 gnu/packages/firmware.scm  | 63 ++
 .../patches/emacs-fix-scheme-indent-function.patch | 14 ++---
 gnu/services/base.scm  |  2 +-
 gnu/system/install.scm |  6 +++
 guix/download.scm  |  5 --
 11 files changed, 156 insertions(+), 30 deletions(-)

diff --cc gnu/packages/emacs.scm
index 8c28b25,48c9a6d..79816e9
--- a/gnu/packages/emacs.scm
+++ b/gnu/packages/emacs.scm
@@@ -156,11 -156,11 +156,12 @@@
   (list line
 "\"~/.guix-profile/include\""
 "\"/var/guix/profiles/system/profile/include\"")
 - " ")))
 + " ")))
 + #t
  (build-system glib-or-gtk-build-system)
  (arguments
-  `(#:phases
+  `(#:tests? #f  ; no check target
+#:phases
 (modify-phases %standard-phases
   (add-before 'configure 'fix-/bin/pwd
 (lambda _

01/01: Merge branch 'master' into core-updates

2018-05-28 Thread Mark H. Weaver

mhw pushed a commit to branch core-updates
in repository guix.

commit 82b695b834f88c5561de40e68f3fe7aa24d3b796
Merge: fe365a3 ee3c8fb
Author: Mark H Weaver 
Date:   Mon May 28 20:45:37 2018 -0400

Merge branch 'master' into core-updates

 doc/guix.texi  |  70 +++--
 gnu/bootloader/grub.scm|  10 +-
 gnu/build/file-systems.scm |  54 +---
 gnu/build/linux-boot.scm   |  12 +-
 gnu/build/shepherd.scm |   3 +-
 gnu/local.mk   |   4 +
 gnu/packages/algebra.scm   |  36 +++
 gnu/packages/audio.scm |  12 +-
 gnu/packages/bootloaders.scm   |  47 ++-
 gnu/packages/check.scm |  20 ++
 gnu/packages/code.scm  |  58 +++-
 gnu/packages/compression.scm   |  19 +-
 gnu/packages/cpp.scm   | 120 
 gnu/packages/games.scm |   4 +-
 gnu/packages/gnuzilla.scm  |  10 +-
 gnu/packages/java.scm  | 336 -
 gnu/packages/linux.scm |  49 ++-
 gnu/packages/messaging.scm |   8 +-
 gnu/packages/music.scm |  47 +--
 gnu/packages/networking.scm|  17 +-
 .../patches/fifo-map-fix-flags-for-gcc.patch   |  39 +++
 .../patches/fifo-map-remove-catch.hpp.patch|  30 ++
 gnu/packages/patches/libmygpo-qt-fix-qt-5.11.patch |  78 +
 .../patches/libmygpo-qt-missing-qt5-modules.patch  |  51 
 gnu/packages/qt.scm| 309 ++-
 gnu/packages/video.scm |   7 +
 gnu/services/base.scm  |  17 +-
 gnu/system.scm |  38 +--
 gnu/system/examples/bare-bones.tmpl|   3 +-
 gnu/system/examples/beaglebone-black.tmpl  |   3 +-
 gnu/system/examples/lightweight-desktop.tmpl   |   4 +-
 gnu/system/examples/vm-image.tmpl  |   3 +-
 gnu/system/file-systems.scm| 108 ++-
 gnu/system/install.scm |   4 +-
 gnu/system/vm.scm  |   7 +-
 gnu/tests.scm  |   3 +-
 gnu/tests/install.scm  |  26 +-
 guix/scripts/pack.scm  | 109 ++-
 guix/scripts/system.scm|  31 +-
 tests/guix-system.sh   |   9 +-
 tests/system.scm   |   6 +-
 41 files changed, 1426 insertions(+), 395 deletions(-)

diff --cc gnu/packages/compression.scm
index e145d53,a428e6c..9921cd5
--- a/gnu/packages/compression.scm
+++ b/gnu/packages/compression.scm
@@@ -1,10 -1,10 +1,10 @@@
  ;;; GNU Guix --- Functional package management for GNU
  ;;; Copyright © 2012, 2013, 2014, 2015, 2017 Ludovic Courtès 
  ;;; Copyright © 2013 Andreas Enge 
 -;;; Copyright © 2014, 2015 Mark H Weaver 
 +;;; Copyright © 2014, 2015, 2018 Mark H Weaver 
  ;;; Copyright © 2015 Taylan Ulrich Bayırlı/Kammer 
  ;;; Copyright © 2015, 2016 Eric Bavier 
- ;;; Copyright © 2015, 2016, 2017 Ricardo Wurmus 
+ ;;; Copyright © 2015, 2016, 2017, 2018 Ricardo Wurmus 
  ;;; Copyright © 2015, 2017, 2018 Leo Famulari 
  ;;; Copyright © 2015 Jeff Mickey 
  ;;; Copyright © 2015, 2016, 2017 Efraim Flashner 
diff --cc gnu/packages/music.scm
index 6f17fa7,7ae0d9a..ff34728
--- a/gnu/packages/music.scm
+++ b/gnu/packages/music.scm
@@@ -197,37 -197,35 +197,37 @@@ score, keyboard, guitar, drum and contr
  (uri (git-reference
(url 
"https://github.com/clementine-player/Clementine.git";)
(commit commit)))
- (file-name (string-append name "-" version "-checkout"))
+ (file-name (git-file-name name version))
  (sha256
   (base32
-"0cdcj7di7j9jgzc1ihjna1a5df64f9hnmx7b9kh8rlg76hc0l0hi"))
+   "1hximk3q0p8nw8is5w7215xgkb7k4flnfyr0pdz9svfwvcm05w1i"))
  (modules '((guix build utils)))
  (snippet
 -  '(for-each
 + '(begin
 +(for-each
   (lambda (dir)
 (delete-file-recursively
 - (string-append "3rdparty/" dir)))
 +(string-append "3rdparty/" dir)))
   (list
 -   ;; TODO: The following dependencies are still bundled:
 -   ;; - "qxt": Appears to be unmaintained upstream.
 -   ;; - "qsqlite"
 -   ;; - "qtsingleapplication"
 -

01/01: Merge branch 'master' into core-updates

2018-05-26 Thread Mark H. Weaver

mhw pushed a commit to branch core-updates
in repository guix.

commit 1640f16e7888291227d11647dbb5f83ad5d138a1
Merge: 0ff4e49 a4e45ac
Author: Mark H Weaver 
Date:   Sun May 27 01:26:09 2018 -0400

Merge branch 'master' into core-updates

 gnu/build/vm.scm|  13 ++-
 gnu/packages/accessibility.scm  |   6 +-
 gnu/packages/algebra.scm|   8 +-
 gnu/packages/audio.scm  |   8 +-
 gnu/packages/bioinformatics.scm |  36 ++
 gnu/packages/compression.scm|  73 
 gnu/packages/cpp.scm|  27 +
 gnu/packages/cran.scm   |  34 ++
 gnu/packages/emacs.scm  |  25 +
 gnu/packages/emulators.scm  |  60 +-
 gnu/packages/freedesktop.scm|   7 +-
 gnu/packages/games.scm  | 242 
 gnu/packages/geo.scm|   2 +-
 gnu/packages/gnome.scm  |   4 +-
 gnu/packages/gnunet.scm |   9 +-
 gnu/packages/image-viewers.scm  |   4 +-
 gnu/packages/image.scm  |  48 
 gnu/packages/linux.scm  |  30 +++--
 gnu/packages/maths.scm  |  87 ---
 gnu/packages/mpi.scm|  20 ++--
 gnu/packages/networking.scm |   7 +-
 gnu/packages/python-web.scm |  31 +
 gnu/packages/python.scm | 132 +-
 gnu/packages/rust.scm   |   8 +-
 gnu/packages/samba.scm  |   4 +-
 gnu/packages/search.scm |  39 ++-
 gnu/packages/statistics.scm |  12 +-
 gnu/packages/tls.scm|  18 ++-
 gnu/packages/video.scm  |   8 +-
 gnu/packages/wine.scm   |   6 +-
 gnu/services/desktop.scm|   7 +-
 guix/http-client.scm|   2 +-
 32 files changed, 924 insertions(+), 93 deletions(-)

diff --cc gnu/packages/freedesktop.scm
index ad1725f,57af63c..9a01c78
--- a/gnu/packages/freedesktop.scm
+++ b/gnu/packages/freedesktop.scm
@@@ -7,9 -7,9 +7,9 @@@
  ;;; Copyright © 2015 David Hashe 
  ;;; Copyright © 2016, 2017 Efraim Flashner 
  ;;; Copyright © 2016 Kei Kebreau 
 -;;; Copyright © 2017 Mark H Weaver 
 +;;; Copyright © 2017, 2018 Mark H Weaver 
  ;;; Copyright © 2017, 2018 Marius Bakke 
- ;;; Copyright © 2017 Rutger Helling 
+ ;;; Copyright © 2017, 2018 Rutger Helling 
  ;;; Copyright © 2017 Brendan Tildesley 
  ;;; Copyright © 2018 Tobias Geerinckx-Rice 
  ;;;
diff --cc gnu/packages/maths.scm
index aac0420,a36d233..09d2780
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@@ -2145,11 -2165,9 +2173,10 @@@ void mc64ad_dist (int *a, int *b, int *
fprintf (stderr, \"SuperLU_DIST: non-free MC64 not available.  
Aborting.\\n\");
abort ();
  }\n" port)))
-(delete-file "SRC/mc64ad.f.bak")
 (substitute* "SRC/util.c";adjust default algorithm
   (("RowPerm[[:blank:]]*=[[:blank:]]*LargeDiag")
 -  "RowPerm = NOROWPERM"
 +  "RowPerm = NOROWPERM"))
 +   #t))
 (patches (search-patches "superlu-dist-scotchmetis.patch"
  (build-system gnu-build-system)
  (native-inputs
diff --cc gnu/packages/video.scm
index 52003ce,9ed0f4b..32b3257
--- a/gnu/packages/video.scm
+++ b/gnu/packages/video.scm
@@@ -387,11 -388,12 +387,11 @@@ and creating Matroska files from other 
  "x265_" version ".tar.gz"))
  (sha256
   (base32
-   "18llni1m8kfvdwy5bp950z6gyd0nijmvi3hzd6gd8vpy5yk5zrym"))
+   "0qx8mavwdzdpkkby7n29i9av7zsnklavacwfz537mf62q2pzjnbf"))
  (modules '((guix build utils)))
 -(snippet
 - '(begin
 -(delete-file-recursively "source/compat/getopt")
 -#t
 +(snippet '(begin
 +(delete-file-recursively "source/compat/getopt")
 +#t
  (build-system cmake-build-system)
  (arguments
   `(#:tests? #f ; tests are skipped if cpu-optimized code isn't built

01/01: Merge branch 'master' into core-updates

2018-05-23 Thread Mark H. Weaver

mhw pushed a commit to branch core-updates
in repository guix.

commit 9d10a63402e3c3dcda288b9370d04568dfa20ea6
Merge: 4935701 11c237f
Author: Mark H Weaver 
Date:   Thu May 24 02:34:08 2018 -0400

Merge branch 'master' into core-updates

 gnu/build/vm.scm  |   3 +-
 gnu/local.mk  |   1 -
 gnu/packages/bioinformatics.scm   |  11 +-
 gnu/packages/cmake.scm|  18 +++
 gnu/packages/code.scm | 119 ++
 gnu/packages/commencement.scm |   2 +-
 gnu/packages/connman.scm  |   6 +-
 gnu/packages/cran.scm |  52 
 gnu/packages/debug.scm|   2 +-
 gnu/packages/emacs.scm|  54 
 gnu/packages/flex.scm |   2 +-
 gnu/packages/geo.scm  | 148 ++
 gnu/packages/gimp.scm |  16 ++-
 gnu/packages/golang.scm   | 171 ++
 gnu/packages/indent.scm   |  58 -
 gnu/packages/linux.scm|  16 +--
 gnu/packages/mail.scm |   4 +-
 gnu/packages/mes.scm  |  36 --
 gnu/packages/parallel.scm |   4 +-
 gnu/packages/patches/libusb-for-axoloti.patch |  14 ++-
 gnu/packages/pretty-print.scm |  42 ---
 gnu/packages/tor.scm  |   4 +-
 gnu/packages/version-control.scm  |   4 +-
 gnu/packages/video.scm|  12 +-
 gnu/packages/web.scm  |   4 +-
 gnu/packages/xdisorg.scm  |   6 +-
 gnu/system/linux-initrd.scm   |   2 +-
 gnu/system/vm.scm |   5 +
 guix/records.scm  |  54 +++-
 tests/records.scm |  30 -
 30 files changed, 738 insertions(+), 162 deletions(-)

diff --cc gnu/packages/cmake.scm
index e9fa866,258ea9c..06b1cab
--- a/gnu/packages/cmake.scm
+++ b/gnu/packages/cmake.scm
@@@ -154,3 -151,76 +155,20 @@@ and workspaces that can be used in the 
 license:bsd-2 ; cmlibarchive
 license:expat ; cmjsoncpp is dual MIT/public 
domain
 license:public-domain ; cmlibarchive/archive_getdate.c
+ 
 -;; Recent Ceph requires Boost 1.66, which in turn requires CMake 3.11 for
 -;; its updated "FindBoost.cmake" facility.
 -(define-public cmake-3.11
 -  (package
 -(inherit cmake)
 -(version "3.11.0-rc2")
 -(source (origin
 -  (inherit (package-source cmake))
 -  (uri (string-append "https://www.cmake.org/files/v";
 -  (version-major+minor version)
 -  "/cmake-" version ".tar.gz"))
 -  (sha256
 -   (base32
 -"14p6ais19nfcwl914n4n5rbzaqwafv3qkg6nd8jw54ykn6lz6mf3"))
 -  (snippet
 -   '(begin
 -  ;; Drop bundled software.
 -  (with-directory-excursion "Utilities"
 -(for-each delete-file-recursively
 -  '("cmbzip2"
 -"cmcurl"
 -"cmexpat"
 -"cmliblzma"
 -"cmzlib"))
 -#t)
 -(build-system gnu-build-system)
 -(arguments
 - (substitute-keyword-arguments (package-arguments cmake)
 -   ((#:make-flags flags ''()) `(cons (string-append
 -  "ARGS=-j "
 -  (number->string 
(parallel-job-count))
 -  " --output-on-failure")
 - ,flags))
 -   ((#:phases phases)
 -`(modify-phases ,phases
 -   (replace 'patch-bin-sh
 - (lambda _
 -   (substitute*
 -   '("Modules/CompilerId/Xcode-3.pbxproj.in"
 - "Modules/CPack.RuntimeScript.in"
 - "Source/cmakexbuild.cxx"
 - "Source/cmGlobalXCodeGenerator.cxx"
 - "Source/cmLocalUnixMakefileGenerator3.cxx"
 - "Source/cmExecProgramCommand.cxx"
 - "Utilities/Release/release_cmake.cmake"
 - 
"Utilities/cmlibarchive/libarchive/archive_write_set_format_shar.c"
 - "Tests/CMakeLists.txt"
 - "Tests/RunCMake/File_Generate/RunCMakeTest.cmake")
 - (("/bin/sh") (which "sh")))
 -   #t))
 -   ;; This is now passed through #:make-flags.
 -   (delete 'set-test-environment)
 -(inputs
 - `(("rhash" ,rhash)

01/01: Merge branch 'master' into core-updates

2018-05-21 Thread Mark H. Weaver

mhw pushed a commit to branch core-updates
in repository guix.

commit ab9da9ec66a0631dfb97f059f9c8693ad8000e6d
Merge: 0661758 4699ffa
Author: Mark H Weaver 
Date:   Mon May 21 13:41:18 2018 -0400

Merge branch 'master' into core-updates

 gnu/packages/curl.scm   | 14 ++
 gnu/packages/dns.scm|  4 ++--
 gnu/packages/linux.scm  | 13 ++---
 gnu/packages/patches/pius.patch | 38 ++
 4 files changed, 56 insertions(+), 13 deletions(-)

diff --cc gnu/packages/curl.scm
index 78dcc64,16cbdcd..65bc698
--- a/gnu/packages/curl.scm
+++ b/gnu/packages/curl.scm
@@@ -50,7 -49,8 +50,8 @@@
  (define-public curl
(package
 (name "curl")
 -   (version "7.57.0")
 +   (version "7.59.0")
+(replacement curl-7.60.0)
 (source (origin
  (method url-fetch)
  (uri (string-append "https://curl.haxx.se/download/curl-";

01/01: Merge branch 'master' into core-updates

2018-05-21 Thread Mark H. Weaver

mhw pushed a commit to branch core-updates
in repository guix.

commit 0661758e133c0384d20043d3526b5ebc794e1f04
Merge: 539bf8f c036959
Author: Mark H Weaver 
Date:   Mon May 21 13:22:32 2018 -0400

Merge branch 'master' into core-updates

 Makefile.am|1 +
 NEWS   |7 +
 doc/guix.texi  |   38 +-
 etc/guix-install.sh|4 +-
 gnu/bootloader/u-boot.scm  |   20 +
 gnu/local.mk   |4 +-
 gnu/packages/admin.scm |4 +-
 gnu/packages/audio.scm |   20 +-
 gnu/packages/aux-files/linux-libre/4.16-arm64.conf | 8104 
 gnu/packages/bioinformatics.scm|   25 +-
 gnu/packages/bittorrent.scm|6 +-
 gnu/packages/bootloaders.scm   |   41 +
 gnu/packages/compression.scm   |   16 +-
 gnu/packages/cran.scm  |8 +-
 gnu/packages/emacs.scm |9 +-
 gnu/packages/enlightenment.scm |3 +-
 gnu/packages/gnupg.scm |8 +-
 gnu/packages/guile.scm |  153 +
 gnu/packages/haskell.scm   |   75 +-
 gnu/packages/image.scm |   34 +
 gnu/packages/libreoffice.scm   |4 +-
 gnu/packages/linux.scm |   22 +-
 gnu/packages/messaging.scm |4 +-
 gnu/packages/networking.scm|   73 +
 .../patches/enlightenment-fix-setuid-path.patch|  168 +
 gnu/packages/python.scm|   42 +
 gnu/packages/rust.scm  |   11 +-
 gnu/packages/shells.scm|4 +-
 gnu/packages/statistics.scm|4 +-
 gnu/packages/time.scm  |8 +-
 gnu/packages/version-control.scm   |   33 +-
 gnu/packages/video.scm |   12 +-
 gnu/packages/web.scm   |8 +-
 gnu/packages/wm.scm|4 +-
 gnu/packages/xdisorg.scm   |   37 +
 gnu/packages/xml.scm   |   21 +-
 gnu/packages/xorg.scm  |4 +-
 gnu/services/cgit.scm  |   17 +-
 gnu/services/dbus.scm  |2 +-
 gnu/services/desktop.scm   |   62 +
 gnu/services/networking.scm|5 +
 gnu/system.scm |5 +-
 gnu/system/file-systems.scm|3 +-
 gnu/system/install.scm |6 +
 gnu/system/uuid.scm|   11 +-
 guix/build/union.scm   |   17 +-
 guix/profiles.scm  |   52 +
 nix/libstore/build.cc  |8 +
 tests/guix-pack.sh |6 +-
 tests/guix-system.sh   |4 +-
 tests/uuid.scm |9 +-
 51 files changed, 9091 insertions(+), 155 deletions(-)

01/01: Merge branch 'master' into core-updates

2018-05-16 Thread Mark H. Weaver

mhw pushed a commit to branch core-updates
in repository guix.

commit 539bf8f2c071b53834829259bb3fabf0390c5dc6
Merge: 9038743 2cf8531
Author: Mark H Weaver 
Date:   Thu May 17 01:00:50 2018 -0400

Merge branch 'master' into core-updates

 Makefile.am|5 +-
 NEWS   |5 +
 build-aux/hydra/gnu-system.scm |3 +-
 build-aux/test-env.in  |1 +
 doc/guix.texi  |  124 ++-
 gnu/bootloader/extlinux.scm|1 +
 gnu/bootloader/u-boot.scm  |   34 +-
 gnu/local.mk   |   16 +-
 gnu/packages.scm   |2 +-
 gnu/packages/android.scm   |  613 ---
 gnu/packages/aux-files/run-in-namespace.c  |  313 ++
 gnu/packages/bioconductor.scm  |   32 +
 gnu/packages/bioinformatics.scm|   82 +-
 gnu/packages/bootloaders.scm   |   41 +-
 gnu/packages/commencement.scm  |2 +-
 gnu/packages/dunst.scm |5 +-
 gnu/packages/education.scm |   73 +-
 gnu/packages/emacs.scm |   85 +-
 gnu/packages/emulators.scm |   12 +-
 gnu/packages/ftp.scm   |4 +-
 gnu/packages/games.scm |5 +-
 gnu/packages/gnome.scm |8 +-
 gnu/packages/gnuzilla.scm  |   34 +-
 gnu/packages/golang.scm|8 +-
 gnu/packages/graphviz.scm  |4 +-
 gnu/packages/groovy.scm| 1156 
 gnu/packages/gstreamer.scm |1 -
 gnu/packages/guile.scm |  111 +-
 gnu/packages/haskell-check.scm |   14 +
 gnu/packages/haskell.scm   |   55 +
 gnu/packages/image-processing.scm  |  205 
 gnu/packages/image-viewers.scm |   40 +-
 gnu/packages/imagemagick.scm   |8 +-
 gnu/packages/inkscape.scm  |9 +-
 gnu/packages/javascript.scm|   39 +
 gnu/packages/kde-frameworks.scm|4 +-
 gnu/packages/libreoffice.scm   |4 +-
 gnu/packages/linux.scm |   64 +-
 gnu/packages/lxde.scm  |4 +-
 gnu/packages/maths.scm |   10 +-
 gnu/packages/messaging.scm |   14 +-
 gnu/packages/mpd.scm   |3 +-
 gnu/packages/nano.scm  |4 +-
 gnu/packages/networking.scm|4 +-
 gnu/packages/package-management.scm|4 +-
 gnu/packages/password-utils.scm|   33 +-
 gnu/packages/patches/adb-add-libraries.patch   |   30 +
 .../groovy-add-exceptionutilsgenerator.patch   |   98 ++
 ...> icecat-CVE-2018-5157-and-CVE-2018-5158.patch} |0
 gnu/packages/patches/libutils-add-includes.patch   |   11 +
 .../libutils-remove-damaging-includes.patch|   21 +
 .../patches/libziparchive-add-includes.patch   |   10 +
 gnu/packages/patches/mupdf-CVE-2017-17858.patch|  111 --
 gnu/packages/patches/mupdf-CVE-2018-151.patch  |   88 --
 gnu/packages/patches/mupdf-CVE-2018-6544.patch |  109 --
 .../patches/mupdf-build-with-latest-openjpeg.patch |   27 -
 gnu/packages/patches/myrepos-CVE-2018-7032.patch   |   69 ++
 .../patches/python-statsmodels-fix-tests.patch |   28 -
 .../patches/wesnoth-fix-std-bad-cast.patch |   67 --
 gnu/packages/pdf.scm   |   10 +-
 gnu/packages/photo.scm |4 +-
 gnu/packages/printers.scm  |   69 ++
 gnu/packages/python-crypto.scm |  124 +++
 gnu/packages/python-web.scm|  109 ++
 gnu/packages/python.scm|  102 +-
 gnu/packages/rust.scm  |   15 +-
 gnu/packages/shells.scm|4 +-
 gnu/packages/statistics.scm|   46 +-
 gnu/packages/telephony.scm |   69 ++
 gnu/packages/tls.scm   |4 +-
 gnu/packages/version-control.scm   |3 +-
 gnu/packages/video.scm |8 +-
 gnu/packages/web-browsers.scm  |8 +-
 gnu/packages/wine.scm  |   10 +-
 gnu/packages/wm.scm|4 +-
 gnu/packages/xdisorg.scm   |6 +-
 gnu/packages/xml.scm

01/01: Merge branch 'master' into core-updates

2018-05-08 Thread Mark H. Weaver

mhw pushed a commit to branch core-updates
in repository guix.

commit aedc6e9fc952665e666f2febfc0b37235ad850ff
Merge: 69d5909 f1f6f22
Author: Mark H Weaver 
Date:   Tue May 8 18:45:39 2018 -0400

Merge branch 'master' into core-updates

 doc/guix.texi  |   4 +-
 gnu/local.mk   |   2 +
 gnu/packages/admin.scm | 121 -
 gnu/packages/emacs.scm |  43 ++--
 gnu/packages/fonts.scm |   2 +-
 gnu/packages/game-development.scm  |   3 +-
 gnu/packages/games.scm |  39 ++-
 gnu/packages/gcc.scm   |  12 +-
 gnu/packages/gnome.scm |   4 +-
 gnu/packages/linux.scm |   1 +
 gnu/packages/mail.scm  |   2 +-
 gnu/packages/man.scm   |  11 +-
 gnu/packages/messaging.scm |  47 
 gnu/packages/mpd.scm   |   4 +-
 gnu/packages/networking.scm|  11 +-
 gnu/packages/patches/strace-kernel-4.16.patch  |  92 
 .../patches/wesnoth-fix-std-bad-cast.patch |  67 
 gnu/packages/upnp.scm  |   4 +-
 gnu/packages/webkit.scm|   4 +-
 gnu/packages/wget.scm  |   4 +-
 guix/scripts/pack.scm  |  72 ++--
 guix/self.scm  |  27 -
 tests/guix-pack.sh |  20 +++-
 23 files changed, 464 insertions(+), 132 deletions(-)

diff --cc gnu/packages/fonts.scm
index 7e15537,19597f0..031df7f
--- a/gnu/packages/fonts.scm
+++ b/gnu/packages/fonts.scm
@@@ -137,9 -137,8 +137,9 @@@ TrueType (TTF) files."
 (lambda* (#:key outputs #:allow-other-keys)
   (let ((conf-dir (string-append (assoc-ref outputs "out")
  "/share/fontconfig/conf.avail")))
 -   (copy-recursively "fontconfig" conf-dir)))
 +   (copy-recursively "fontconfig" conf-dir)
 +   #t))
- (home-page "http://dejavu-fonts.org/";)
+ (home-page "https://dejavu-fonts.github.io/";)
  (synopsis "Vera font family derivate with additional characters")
  (description "DejaVu provides an expanded version of the Vera font family
  aiming for quality and broader Unicode coverage while retaining the original
diff --cc gnu/packages/gcc.scm
index 741cfab,ba2fce6..5012d9a
--- a/gnu/packages/gcc.scm
+++ b/gnu/packages/gcc.scm
@@@ -474,18 -467,26 +474,28 @@@ Go.  It also includes runtime support l
;; This can be removed when gcc-6.5.0 is released.
;; https://gcc.gnu.org/bugzilla/show_bug.cgi?id=81712
(snippet
 -   '(for-each
 -  (lambda (dir)
 -(substitute* (string-append "libgcc/config/"
 -dir "/linux-unwind.h")
 -  (("struct ucontext") "ucontext_t")))
 -  '("aarch64" "alpha" "bfin" "i386" "m68k" "nios2"
 -"pa" "sh" "tilepro" "xtensa")
 +   '(begin
 +  (for-each
 +   (lambda (dir)
 + (substitute* (string-append "libgcc/config/"
 + dir "/linux-unwind.h")
 +   (("struct ucontext") "ucontext_t")))
 +   '("aarch64" "alpha" "bfin" "i386" "m68k" "nios2"
 + "pa" "sh" "tilepro" "xtensa"))
 +  #t
  (inputs
   `(("isl" ,isl)
-,@(package-inputs gcc-4.7)
+,@(package-inputs gcc-4.7)))
+ 
+ (native-search-paths
+  ;; We have to use 'CPATH' for GCC > 5, not 'C_INCLUDE_PATH' & co., due to
+  ;; .
+  (list (search-path-specification
+ (variable "CPATH")
+ (files '("include")))
+(search-path-specification
+ (variable "LIBRARY_PATH")
+ (files '("lib" "lib64")))
  
  (define-public gcc-7
(package
diff --cc gnu/packages/man.scm
index 046b0e3,ca6fd35..58e26d8
--- a/gnu/packages/man.scm
+++ b/gnu/packages/man.scm
@@@ -80,9 -79,8 +79,9 @@@ a flexible and convenient way."
   (("#! /bin/sh")
(string-append "#!" (which "sh")
   (remove file-is-directory?
 - (find-files "src/tests" ".*"))
 + (find-files "src/tests" ".*")))
 +   #t)))
-  (add-after 'unpack 'patch-absolute-paths
+  (add-after 'unpack 'patch-iconv-path
 (la

01/01: Merge branch 'master' into core-updates

2018-05-06 Thread Marius Bakke

mbakke pushed a commit to branch core-updates
in repository guix.

commit 12bd588346f8b2fb3709acfe0ee89d153da2db34
Merge: 7d5adf0 8e02051
Author: Marius Bakke 
Date:   Sun May 6 15:56:24 2018 +0200

Merge branch 'master' into core-updates

 doc/guix.texi  |   44 +
 gnu/local.mk   |   10 +-
 gnu/packages/admin.scm |9 +-
 gnu/packages/aidc.scm  |6 +-
 gnu/packages/algebra.scm   |4 +-
 gnu/packages/audio.scm |   13 +-
 gnu/packages/avahi.scm |   31 +-
 gnu/packages/bioconductor.scm  |5 +-
 gnu/packages/bioinformatics.scm|2 +-
 gnu/packages/bittorrent.scm|4 +-
 gnu/packages/boost.scm |6 +-
 gnu/packages/c.scm |4 +-
 gnu/packages/check.scm |2 +
 gnu/packages/cran.scm  |   21 +-
 gnu/packages/emacs.scm | 2454 +++-
 gnu/packages/emulators.scm |5 +-
 gnu/packages/engineering.scm   |4 +-
 gnu/packages/enlightenment.scm |5 +-
 gnu/packages/freeipmi.scm  |4 +-
 gnu/packages/game-development.scm  |   24 +-
 gnu/packages/games.scm |  182 +-
 gnu/packages/gimp.scm  |  121 +-
 gnu/packages/gl.scm|6 +-
 gnu/packages/gnome.scm |   95 +-
 gnu/packages/gnupg.scm |   25 +-
 gnu/packages/gnuzilla.scm  |2 +-
 gnu/packages/groff.scm |2 +-
 gnu/packages/guile.scm |   37 +-
 gnu/packages/linux.scm |   36 +-
 gnu/packages/mail.scm  |   30 +-
 gnu/packages/man.scm   |   15 +-
 gnu/packages/maths.scm |   35 +-
 gnu/packages/messaging.scm |   40 +-
 gnu/packages/nano.scm  |4 +-
 gnu/packages/networking.scm|   63 +
 gnu/packages/ocaml.scm |   35 +-
 gnu/packages/package-management.scm|9 +
 gnu/packages/patches/amule-crypto-6.patch  |   45 +
 gnu/packages/patches/gegl-CVE-2012-4433.patch  |  117 -
 gnu/packages/patches/gimp-CVE-2017-17784.patch |   41 -
 gnu/packages/patches/gimp-CVE-2017-17785.patch |  171 --
 gnu/packages/patches/gimp-CVE-2017-17786.patch |   94 -
 gnu/packages/patches/gimp-CVE-2017-17787.patch |   42 -
 gnu/packages/patches/gimp-CVE-2017-17789.patch |   48 -
 .../patches/liboop-mips64-deplibs-fix.patch|   17 -
 gnu/packages/patches/shadow-CVE-2018-7169.patch|  191 --
 gnu/packages/pdf.scm   |   32 +-
 gnu/packages/perl.scm  |4 +-
 gnu/packages/photo.scm |4 +-
 gnu/packages/plotutils.scm |4 +-
 gnu/packages/python.scm|   54 +-
 gnu/packages/qt.scm|4 +-
 gnu/packages/ruby.scm  |   22 +-
 gnu/packages/samba.scm |   20 +-
 gnu/packages/security-token.scm|   90 +
 gnu/packages/serialization.scm |6 +-
 gnu/packages/shells.scm|4 +-
 gnu/packages/ssh.scm   |9 +-
 gnu/packages/statistics.scm|   40 +-
 gnu/packages/syncthing.scm |   28 +-
 gnu/packages/tls.scm   |   18 +-
 gnu/packages/upnp.scm  |4 +-
 gnu/packages/video.scm |3 +-
 gnu/packages/virtualization.scm|4 +-
 gnu/packages/web.scm   |   34 +-
 gnu/packages/wm.scm|   45 +
 gnu/packages/xorg.scm  |   11 +-
 gnu/services/messaging.scm |9 +-
 gnu/services/sound.scm |   86 +
 guix/build/compile.scm |   45 +-
 guix/build/emacs-utils.scm |4 +-
 guix/scripts/build.scm |   76 +-
 guix/scripts/system/search.scm |7 +-
 guix/scripts/weather.scm   |8 +-
 guix/ui.scm|   73 +-
 po/guix/pt_BR.po   | 1119 +
 tests/guix-build.sh

01/01: Merge branch 'master' into core-updates

2018-04-30 Thread Mark H. Weaver

mhw pushed a commit to branch core-updates
in repository guix.

commit f0ae90cbbb275cb5585bee2374df24dc2d499151
Merge: 3d5ad15 59bc15c
Author: Mark H Weaver 
Date:   Mon Apr 30 16:48:15 2018 -0400

Merge branch 'master' into core-updates

 doc/guix.texi |  34 +-
 gnu/local.mk  |   1 +
 gnu/packages/admin.scm|   8 +-
 gnu/packages/build-tools.scm  |   4 +-
 gnu/packages/certs.scm|   4 +-
 gnu/packages/crypto.scm   |  33 +-
 gnu/packages/databases.scm|   8 +-
 gnu/packages/emacs.scm|   7 -
 gnu/packages/freedesktop.scm  |  12 +-
 gnu/packages/gl.scm   |   4 +-
 gnu/packages/gnuzilla.scm |  13 +-
 gnu/packages/gstreamer.scm|  34 +-
 gnu/packages/gtk.scm  |  12 +-
 gnu/packages/linux.scm|  18 +-
 gnu/packages/messaging.scm|   8 +-
 gnu/packages/patches/icecat-bug-1452075.patch | 441 ++
 gnu/packages/pdf.scm  |   4 +-
 gnu/packages/python.scm   |  53 +++-
 gnu/packages/skribilo.scm |  22 +-
 gnu/packages/tex.scm  |  18 +-
 gnu/packages/version-control.scm  |   3 +-
 gnu/packages/wine.scm |   8 +-
 gnu/packages/xdisorg.scm  |   4 +-
 gnu/services/base.scm |  15 +-
 gnu/services/networking.scm   |   2 +
 guix/scripts/system/search.scm|  37 ++-
 tests/guix-system.sh  |   3 +-
 27 files changed, 676 insertions(+), 134 deletions(-)

01/01: Merge branch 'master' into core-updates

2018-04-30 Thread Mark H. Weaver

mhw pushed a commit to branch core-updates
in repository guix.

commit 3d5ad159b336a9903b31d0be7ae052dbc8d5bfcc
Merge: c77835d 8c21c64
Author: Mark H Weaver 
Date:   Mon Apr 30 04:03:54 2018 -0400

Merge branch 'master' into core-updates

 Makefile.am| 5 +
 build-aux/test-env.in  |14 +-
 doc/contributing.texi  | 7 +
 doc/guix.texi  |67 +
 doc/local.mk   |12 +-
 gnu/local.mk   |15 +-
 gnu/packages/admin.scm |81 +-
 gnu/packages/android.scm   | 4 +-
 gnu/packages/audio.scm |15 +-
 gnu/packages/benchmark.scm | 9 +-
 gnu/packages/bioconductor.scm  |   259 +
 gnu/packages/bioinformatics.scm|   102 +-
 gnu/packages/bittorrent.scm| 2 -
 gnu/packages/bootloaders.scm   |25 +-
 gnu/packages/cdrom.scm | 2 +-
 gnu/packages/commencement.scm  | 8 +-
 gnu/packages/cran.scm  |   353 +-
 gnu/packages/cups.scm  |10 +-
 gnu/packages/databases.scm | 4 +-
 gnu/packages/debug.scm | 3 +-
 gnu/packages/dictionaries.scm  |17 +-
 gnu/packages/disk.scm  |28 +
 gnu/packages/education.scm |43 +-
 gnu/packages/emacs.scm |   115 +-
 gnu/packages/emulators.scm | 6 +-
 gnu/packages/engineering.scm   | 6 +-
 gnu/packages/enlightenment.scm |24 +-
 gnu/packages/freedesktop.scm   | 4 +-
 gnu/packages/game-development.scm  |27 +-
 gnu/packages/games.scm | 3 +-
 gnu/packages/geo.scm   | 8 +-
 gnu/packages/gnome.scm |48 +-
 gnu/packages/gnunet.scm| 2 +-
 gnu/packages/gnupg.scm | 4 +-
 gnu/packages/golang.scm|12 +-
 gnu/packages/graph.scm |11 +-
 gnu/packages/gstreamer.scm | 2 +-
 gnu/packages/guile.scm | 2 +-
 gnu/packages/image-viewers.scm | 4 +-
 gnu/packages/image.scm |32 +-
 gnu/packages/irc.scm   | 9 +-
 gnu/packages/java.scm  |   303 +-
 gnu/packages/julia.scm | 2 +-
 gnu/packages/libreoffice.scm   | 8 +-
 gnu/packages/linux.scm |   127 +-
 gnu/packages/lxde.scm  |13 +-
 gnu/packages/machine-learning.scm  |44 +
 gnu/packages/mail.scm  | 4 +-
 gnu/packages/maths.scm |16 +-
 gnu/packages/mes.scm   | 9 +-
 gnu/packages/messaging.scm |36 +-
 gnu/packages/mpd.scm   | 4 +-
 gnu/packages/music.scm |35 +-
 gnu/packages/node.scm  | 4 +-
 gnu/packages/package-management.scm|11 +-
 gnu/packages/parallel.scm  | 6 +-
 .../patches/bcftools-regidx-unsigned-char.patch|16 -
 .../patches/ceph-skip-collect-sys-info-test.patch  |11 +-
 gnu/packages/patches/freeimage-unbundle.patch  |18 +-
 ...va-apache-ivy-port-to-latest-bouncycastle.patch |81 +
 gnu/packages/patches/pcmanfm-CVE-2017-8934.patch   |56 -
 .../patches/pt-scotch-build-parallelism.patch  |13 -
 gnu/packages/patches/qemu-CVE-2018-7550.patch  |66 -
 gnu/packages/patches/quassel-fix-tls-check.patch   |25 -
 .../patches/scotch-build-parallelism.patch |39 +
 gnu/packages/patches/scotch-graph-diam-64.patch|27 +
 .../patches/scotch-graph-induce-type-64.patch  |19 +
 gnu/packages/patches/zsh-CVE-2018-7548.patch   |48 -
 gnu/packages/patches/zsh-CVE-2018-7549.patch   |56 -
 gnu/packages/perl-check.scm|24 +-
 gnu/packages/perl.scm  |84 +-
 gnu/packages/photo.scm | 8 +-
 gnu/packages/python-crypto.scm |13 +-
 gnu/packages/python-web.scm|13 +-
 gnu/packages/python.scm|62 +-
 gnu/packages/ruby.scm

01/01: Merge branch 'master' into core-updates

2018-04-12 Thread Mark H. Weaver

mhw pushed a commit to branch core-updates
in repository guix.

commit a368663a567b5bcf25db207d03abae144cbc7493
Merge: 4b20e07 e90c5f3
Author: Mark H Weaver 
Date:   Thu Apr 12 15:22:57 2018 -0400

Merge branch 'master' into core-updates

 gnu/packages/gnupg.scm |  8 +++-
 gnu/packages/kde.scm   |  4 ++--
 gnu/packages/rdf.scm   | 15 +++
 gnu/packages/web.scm   |  4 ++--
 gnu/packages/xorg.scm  |  4 ++--
 gnu/system.scm | 11 ++-
 6 files changed, 22 insertions(+), 24 deletions(-)

01/01: Merge branch 'master' into core-updates

2018-03-29 Thread Marius Bakke

mbakke pushed a commit to branch core-updates
in repository guix.

commit 5576cfabf3485e0cf794cc3de085a3578151ee64
Merge: 12cb6c3 e086d2f
Author: Marius Bakke 
Date:   Thu Mar 29 17:34:41 2018 +0200

Merge branch 'master' into core-updates

 Makefile.am|   6 +-
 build-aux/check-final-inputs-self-contained.scm|  36 +-
 doc/guix.texi  | 508 -
 etc/guix-install.sh|  19 +-
 gnu/build/activation.scm   |   5 +-
 gnu/build/vm.scm   |  20 +-
 gnu/local.mk   |  10 +-
 gnu/packages/admin.scm |  14 +-
 gnu/packages/algebra.scm   |  14 +-
 gnu/packages/audio.scm | 111 +
 gnu/packages/bioinformatics.scm|  41 +-
 gnu/packages/boost.scm |  36 ++
 gnu/packages/bootloaders.scm   |  24 +-
 gnu/packages/bootstrap.scm |   3 +-
 gnu/packages/ccache.scm|   6 +-
 gnu/packages/ci.scm|   6 +-
 gnu/packages/compression.scm   |   4 +-
 gnu/packages/cran.scm  | 383 +++-
 gnu/packages/cups.scm  |   4 +-
 gnu/packages/dictionaries.scm  |  11 +-
 gnu/packages/disk.scm  |  94 +++-
 gnu/packages/django.scm|   6 +-
 gnu/packages/dunst.scm |  14 +-
 gnu/packages/emacs.scm |  97 ++--
 gnu/packages/embedded.scm  |   4 +-
 gnu/packages/firmware.scm  |  97 +++-
 gnu/packages/flashing-tools.scm|  11 +-
 gnu/packages/fonts.scm | 159 +++
 gnu/packages/fribidi.scm   |   9 +-
 gnu/packages/ftp.scm   |   4 +-
 gnu/packages/games.scm |   6 +-
 gnu/packages/gnome.scm |  33 +-
 gnu/packages/gnupg.scm |   8 +-
 gnu/packages/gnuzilla.scm  |   3 +-
 gnu/packages/graph.scm |   5 +-
 gnu/packages/graphviz.scm  |   4 +-
 gnu/packages/gtk.scm   |   2 +
 gnu/packages/guile.scm |   1 -
 gnu/packages/haskell-crypto.scm|   7 +-
 gnu/packages/haskell.scm   | 284 +++-
 gnu/packages/image-viewers.scm |  17 +-
 gnu/packages/java.scm  | 448 +++---
 gnu/packages/kde.scm   |  27 +-
 gnu/packages/lego.scm  |  25 +-
 gnu/packages/libffi.scm|   4 +-
 gnu/packages/libreoffice.scm   |  13 +-
 gnu/packages/libusb.scm|  15 +-
 gnu/packages/linux.scm |  22 +-
 gnu/packages/lisp.scm  |  13 +-
 gnu/packages/mail.scm  |  90 +++-
 gnu/packages/mate.scm  |   4 +-
 gnu/packages/maths.scm |  34 +-
 gnu/packages/messaging.scm |   4 +-
 gnu/packages/mpd.scm   |   4 +-
 gnu/packages/mpi.scm   |   9 +-
 gnu/packages/music.scm |   4 +-
 gnu/packages/nano.scm  |   4 +-
 gnu/packages/networking.scm|   3 +
 gnu/packages/node.scm  |   4 +-
 gnu/packages/ntp.scm   |   4 +-
 gnu/packages/ocaml.scm |  19 +-
 gnu/packages/package-management.scm|   2 +
 gnu/packages/parallel.scm  |   4 +-
 .../patches/classpath-aarch64-support.patch|  29 ++
 .../patches/hwloc-tests-without-sysfs.patch|  42 --
 gnu/packages/patches/libusb-for-axoloti.patch  |  14 +-
 gnu/packages/patches/links-CVE-2017-4.patch|  99 
 gnu/packages/patches/lyx-2.2.3-fix-test.patch  |  13 +
 gnu/packages/patches/mupdf-CVE-2018-151.patch  |  88 
 gnu/packages/patches/mupdf-CVE-2018-6544.patch | 109 +
 gnu/packages/patches/shepherd-close-fds.patch  |  36 --
 .../patches/shepherd-herd-status-sorted.patch  |  79 
 .../patches/translate-shell-fix-curl-tests.patch   |  60 +++
 gnu/packages/pdf.scm   |   4 +-
 gnu/packages/perl-web.scm  |  24 +
 gnu/packages/perl.scm  |   4 +-
 gnu/packages/photo.scm

01/01: Merge branch 'master' into core-updates

2018-03-19 Thread Mark H. Weaver

mhw pushed a commit to branch core-updates
in repository guix.

commit 64745c0d7b9ea1b51a3e3492d4d2382f4468
Merge: fe15613 c657716
Author: Mark H Weaver 
Date:   Tue Mar 20 00:49:05 2018 -0400

Merge branch 'master' into core-updates

 doc/guix.texi  |  21 +-
 gnu/build/linux-modules.scm|  19 +-
 gnu/local.mk   |   3 +-
 gnu/packages/android.scm   |   2 +-
 gnu/packages/avahi.scm |  16 +-
 gnu/packages/bash.scm  |   5 +-
 gnu/packages/bioinformatics.scm|  60 +++--
 gnu/packages/bootloaders.scm   |   2 +-
 gnu/packages/build-tools.scm   |   2 +-
 gnu/packages/chemistry.scm |   4 +-
 gnu/packages/code.scm  |   4 +-
 gnu/packages/compression.scm   |  21 +-
 gnu/packages/connman.scm   |   4 +-
 gnu/packages/cran.scm  |  69 --
 gnu/packages/crypto.scm|   2 +-
 gnu/packages/databases.scm |   8 +-
 gnu/packages/datamash.scm  |   4 +-
 gnu/packages/django.scm|   4 +-
 gnu/packages/dns.scm   |  13 +-
 gnu/packages/elf.scm   |   2 +-
 gnu/packages/emacs.scm |   2 +-
 gnu/packages/emulators.scm |   2 +-
 gnu/packages/engineering.scm   |   4 +-
 gnu/packages/enlightenment.scm |   5 +-
 gnu/packages/file-systems.scm  |   2 +-
 gnu/packages/flashing-tools.scm|   6 +-
 gnu/packages/freedesktop.scm   |   6 +-
 gnu/packages/fvwm.scm  |  21 ++
 gnu/packages/games.scm |  26 +--
 gnu/packages/gimp.scm  |  12 +-
 gnu/packages/gl.scm|   2 +-
 gnu/packages/gnome.scm |   6 +-
 gnu/packages/gnuzilla.scm  |   5 +-
 gnu/packages/golang.scm|  52 +
 gnu/packages/graph.scm |   2 +-
 gnu/packages/graphics.scm  |  27 ++-
 gnu/packages/guile.scm | 119 --
 gnu/packages/haskell.scm   |  21 +-
 gnu/packages/image.scm |   4 +-
 gnu/packages/imagemagick.scm   |   4 +-
 gnu/packages/irc.scm   |   6 +-
 gnu/packages/kde-frameworks.scm|  36 +--
 gnu/packages/linux.scm |  48 ++--
 gnu/packages/lua.scm   |  10 +-
 gnu/packages/mail.scm  |   2 +-
 gnu/packages/make-bootstrap.scm|   2 +-
 gnu/packages/maths.scm |  34 +++
 gnu/packages/messaging.scm |  12 +-
 gnu/packages/monitoring.scm|  31 +++
 gnu/packages/music.scm |  10 +-
 gnu/packages/networking.scm|  20 +-
 gnu/packages/ocaml.scm |   6 +-
 gnu/packages/onc-rpc.scm   |   8 +-
 gnu/packages/openstack.scm |  12 +-
 gnu/packages/password-utils.scm|   4 +-
 .../patches/bash-completion-directories.patch  |   8 +-
 .../patches/java-simple-xml-fix-tests.patch|  37 +++
 .../patches/libtirpc-missing-headers.patch |  40 
 gnu/packages/perl.scm  |   6 +-
 gnu/packages/photo.scm |   2 +-
 gnu/packages/protobuf.scm  |   6 +-
 gnu/packages/python-crypto.scm |  19 +-
 gnu/packages/python-web.scm|   2 +-
 gnu/packages/python.scm|  58 ++---
 gnu/packages/qt.scm|   2 +-
 gnu/packages/ratpoison.scm |   2 +-
 gnu/packages/rdesktop.scm  |   7 +-
 gnu/packages/ruby.scm  | 260 +
 gnu/packages/sdl.scm   |   6 +-
 gnu/packages/serialization.scm |   8 +-
 gnu/packages/sml.scm   |   2 +-
 gnu/packages/statistics.scm|   8 +-
 gnu/packages/syncthing.scm |   6 +-
 gnu/packages/terminals.scm |  33 ++-
 gnu/packages/terraform.scm |  52 +
 gnu/packages/tex.scm   |   2 +-
 gnu/packages/text-editors.scm  |   8 +-
 gnu/

01/01: Merge branch 'master' into core-updates

2018-03-16 Thread Mark H. Weaver

mhw pushed a commit to branch core-updates
in repository guix.

commit 9f388b1ee1733d84edff7f473cbcbc4ab42b7128
Merge: 2857e52 9f375a4
Author: Mark H Weaver 
Date:   Sat Mar 17 01:18:37 2018 -0400

Merge branch 'master' into core-updates

 doc/guix.texi  |  10 ++
 gnu/build/vm.scm   | 103 +--
 gnu/local.mk   |   2 +
 gnu/packages/ada.scm   |  40 +
 gnu/packages/admin.scm |  13 +-
 gnu/packages/autotools.scm |   4 +-
 gnu/packages/bioinformatics.scm| 152 
 gnu/packages/cdrom.scm |  14 +-
 gnu/packages/compression.scm   |  44 +
 gnu/packages/cran.scm  |   4 +-
 gnu/packages/databases.scm | 120 +
 gnu/packages/dns.scm   |   7 +-
 gnu/packages/emacs.scm |  45 +
 gnu/packages/freedesktop.scm   |   4 +-
 gnu/packages/geo.scm   | 121 +
 gnu/packages/gnuzilla.scm  |  30 ++--
 gnu/packages/graph.scm |  35 
 gnu/packages/gtk.scm   |   4 +-
 gnu/packages/idris.scm |  64 +--
 gnu/packages/image.scm |  21 +++
 gnu/packages/inkscape.scm  |   1 +
 gnu/packages/java.scm  |  44 ++---
 gnu/packages/language.scm  |   8 +-
 gnu/packages/linux.scm |  11 +-
 gnu/packages/maths.scm |  56 +-
 gnu/packages/messaging.scm |  12 +-
 gnu/packages/networking.scm|  21 ++-
 gnu/packages/patches/shadow-CVE-2018-7169.patch| 191 +
 .../patches/util-linux-CVE-2018-7738.patch |  49 ++
 gnu/packages/python-web.scm|   4 +-
 gnu/packages/python.scm|   1 +
 gnu/packages/samba.scm |   4 +-
 gnu/packages/serialization.scm |  78 -
 gnu/packages/suckless.scm  |   4 +-
 gnu/packages/tex.scm   |  82 +++--
 gnu/packages/tls.scm   |   6 +-
 gnu/packages/video.scm |   4 +-
 gnu/packages/webkit.scm|  14 +-
 gnu/packages/xiph.scm  |  15 +-
 gnu/services/base.scm  |  67 
 gnu/services/shepherd.scm  |  26 ++-
 gnu/system/install.scm |   4 +-
 gnu/system/linux-initrd.scm|  46 +
 gnu/system/mapped-devices.scm  |  51 +-
 guix/scripts/system.scm|  18 +-
 po/guix/POTFILES.in|   2 +-
 tests/packages.scm |  19 +-
 47 files changed, 1390 insertions(+), 285 deletions(-)

diff --cc gnu/packages/java.scm
index ce9896b,5771366..f94c384
--- a/gnu/packages/java.scm
+++ b/gnu/packages/java.scm
@@@ -1095,15 -1092,13 +1095,15 @@@ bootstrapping purposes."
version ".tar.xz"))
  (sha256
   (base32
-   "0s0zh0mj1sab99kb516lsgq3859vsc951phc565gwix4l5g9zppk"))
+   "1w331rdqx1dcx2xb0fmjmrkdc71xqn20fxsgw8by4xhiblh88khh"))
  (modules '((guix build utils)))
  (snippet
 - '(substitute* "Makefile.in"
 -;; do not leak information about the build host
 -(("DISTRIBUTION_ID=\"\\$\\(DIST_ID\\)\"")
 - "DISTRIBUTION_ID=\"\\\"guix\\\"\"")
 + '(begin
 +(substitute* "Makefile.in"
 +  ;; do not leak information about the build host
 +  (("DISTRIBUTION_ID=\"\\$\\(DIST_ID\\)\"")
 +   "DISTRIBUTION_ID=\"\\\"guix\\\"\""))
 +#t
(build-system gnu-build-system)
(outputs '("out"   ; Java Runtime Environment
   "jdk"   ; Java Development Kit
diff --cc gnu/packages/linux.scm
index 8875e5d,df6d746..d2fc387
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@@ -555,8 -556,8 +555,9 @@@ providing the system administrator wit
name "-" version ".tar.xz"))
(sha256
 (base32
 -"12nw108xjhm63sh2n5a0qs33vpvbvb6rln96l9j50p7wykf7rgpr"))
 -  (patches (search-patches "util-linux-tests.patch"))
 +"04fzrnrr3pvqskvjn9f81y0knh0jvvqx4lmbz5pd4lfdm5

01/01: Merge branch 'master' into core-updates

2018-02-24 Thread Marius Bakke

mbakke pushed a commit to branch core-updates
in repository guix.

commit e58bf025df9ea1450e94fb63e87afc1fa5afd182
Merge: 9102ce1 e8ee100
Author: Marius Bakke 
Date:   Sat Feb 24 21:49:30 2018 +0100

Merge branch 'master' into core-updates

 doc/guix.texi  |  105 +-
 etc/guix-install.sh|4 +
 gnu/local.mk   |   17 +-
 gnu/packages/admin.scm |3 +-
 gnu/packages/audio.scm |2 +
 gnu/packages/benchmark.scm |4 +-
 gnu/packages/bioinformatics.scm|4 +-
 gnu/packages/bootloaders.scm   |   18 +-
 gnu/packages/calendar.scm  |   10 +-
 gnu/packages/cook.scm  |   37 +-
 gnu/packages/cran.scm  |4 +-
 gnu/packages/crypto.scm|   47 +
 gnu/packages/debug.scm |2 +-
 gnu/packages/django.scm|   24 +-
 gnu/packages/ebook.scm |   16 +-
 gnu/packages/elf.scm   |2 +-
 gnu/packages/emacs.scm |   66 ++
 gnu/packages/emulators.scm |  
 gnu/packages/fonts.scm |6 +-
 gnu/packages/fontutils.scm |8 +
 gnu/packages/games.scm |  923 +---
 gnu/packages/geo.scm   |  114 +-
 gnu/packages/gettext.scm   |2 +-
 gnu/packages/gl.scm|6 +-
 gnu/packages/gnome.scm |4 +-
 gnu/packages/gnupg.scm |4 +-
 gnu/packages/image.scm |   23 +-
 gnu/packages/imagemagick.scm   |4 +-
 gnu/packages/ldc.scm   |  126 ++-
 gnu/packages/license.scm   |  160 +++
 gnu/packages/linux.scm |   37 +-
 gnu/packages/lout.scm  |  147 ++-
 gnu/packages/mail.scm  |4 +-
 gnu/packages/maths.scm |   28 +-
 gnu/packages/mpd.scm   |   22 +-
 gnu/packages/musl.scm  |7 +-
 gnu/packages/networking.scm|   12 +-
 gnu/packages/package-management.scm|2 +-
 gnu/packages/parallel.scm  |4 +-
 gnu/packages/password-utils.scm|5 +-
 gnu/packages/patches/freetype-CVE-2018-6942.patch  |   31 +
 gnu/packages/patches/htop-fix-process-tree.patch   |   99 ++
 .../patches/ldc-1.1.0-disable-dmd-tests.patch  |   35 -
 .../patches/ldc-1.1.0-disable-phobos-tests.patch   |  414 
 .../patches/ldc-1.7.0-disable-phobos-tests.patch   |   88 ++
 ...sts.patch => ldc-bootstrap-disable-tests.patch} |   18 +-
 .../patches/optipng-CVE-2017-1000229.patch |   22 -
 .../patches/password-store-gnupg-compat.patch  |   28 +
 gnu/packages/patches/qemu-CVE-2017-15038.patch |   51 -
 gnu/packages/patches/qemu-CVE-2017-15289.patch |   66 --
 gnu/packages/patches/wavpack-CVE-2018-7253.patch   |   29 +
 gnu/packages/patches/wavpack-CVE-2018-7254.patch   |   62 ++
 gnu/packages/perl-check.scm|   73 ++
 gnu/packages/perl.scm  |  411 
 gnu/packages/photo.scm |4 +-
 gnu/packages/pumpio.scm|7 +-
 gnu/packages/python-crypto.scm |   12 +-
 gnu/packages/python.scm|4 +-
 gnu/packages/rrdtool.scm   |2 +-
 gnu/packages/samba.scm |4 +-
 gnu/packages/scheme.scm|   47 +-
 gnu/packages/security-token.scm|6 +-
 gnu/packages/skarnet.scm   |   90 +-
 gnu/packages/slang.scm |   10 +-
 gnu/packages/statistics.scm|   39 +-
 gnu/packages/tls.scm   |4 +-
 gnu/packages/upnp.scm  |4 +-
 gnu/packages/version-control.scm   |   35 +-
 gnu/packages/video.scm |   19 +-
 gnu/packages/virtualization.scm|6 +-
 gnu/packages/vulkan.scm|   15 +-
 gnu/packages/web.scm   |8 +-
 gnu/packages/wm.scm|   55 +-
 gnu/packages/wxwidgets.scm |   36 +
 gnu/packages/xorg.scm  |4 +-
 gnu/services/certbot.scm   |  137 ++-
 gnu/

01/01: Merge branch 'master' into core-updates

2018-02-17 Thread Ricardo Wurmus

rekado pushed a commit to branch core-updates
in repository guix.

commit ff9d1a2f0c9cc82ae4c73d8660a87829bae9bf30
Merge: 6f6db02 a01d926
Author: Ricardo Wurmus 
Date:   Sun Feb 18 00:37:46 2018 +0100

Merge branch 'master' into core-updates

 etc/completion/bash/guix   |  11 +-
 gnu/local.mk   |   1 +
 gnu/packages/bioinformatics.scm|   4 +-
 gnu/packages/emacs.scm |  72 +++
 gnu/packages/engineering.scm   |   9 +-
 gnu/packages/games.scm |  82 ++-
 gnu/packages/gtk.scm   |   8 +-
 gnu/packages/libffcall.scm |   6 +-
 gnu/packages/linux.scm |  10 +-
 gnu/packages/maths.scm |   4 +-
 .../patches/ruby-rubygems-276-for-ruby24.patch | 605 +
 gnu/packages/pdf.scm   |  13 +-
 gnu/packages/ruby.scm  |   1 +
 gnu/packages/scheme.scm|   2 +-
 gnu/packages/version-control.scm   |   6 +-
 gnu/packages/xorg.scm  |   4 +-
 gnu/services/xorg.scm  |   1 +
 17 files changed, 812 insertions(+), 27 deletions(-)

diff --cc gnu/packages/games.scm
index 51f158d,6424ede..a53d3ed
--- a/gnu/packages/games.scm
+++ b/gnu/packages/games.scm
@@@ -30,9 -30,9 +30,9 @@@
  ;;; Copyright © 2017 nee 
  ;;; Copyright © 2017 Clément Lassieur 
  ;;; Copyright © 2017 Marius Bakke 
 -;;; Copyright © 2017 Rutger Helling 
 +;;; Copyright © 2017, 2018 Rutger Helling 
  ;;; Copyright © 2017 Roel Janssen 
- ;;; Copyright © 2017 Nicolas Goaziou 
+ ;;; Copyright © 2017, 2018 Nicolas Goaziou 
  ;;;
  ;;; This file is part of GNU Guix.
  ;;;
diff --cc gnu/packages/ruby.scm
index 409390b,90e3e4f..b15e1a2
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.scm
@@@ -61,7 -61,7 +61,8 @@@
 "/ruby-" version ".tar.xz"))
 (sha256
  (base32
 - "0dgp4ypk3smrsbh2c249n5pl6nqhpd2igq9484dbsh81sf08k2kl"))
 + "0l9bv67dgsphk42lmiskhrnh47hbyj6rfg2rcjx22xivpx07srr3"))
++   (patches (search-patches "ruby-rubygems-276-for-ruby24.patch"))
 (modules '((guix build utils)))
 (snippet `(begin
 ;; Remove bundled libffi

01/01: Merge branch 'master' into core-updates

2018-02-16 Thread Mark H. Weaver

mhw pushed a commit to branch core-updates
in repository guix.

commit 150062f19060687dbf8e2cbe6a22c2f8600e7c4e
Merge: 54a9335 6a3cf4e
Author: Mark H Weaver 
Date:   Fri Feb 16 13:14:26 2018 -0500

Merge branch 'master' into core-updates

 build-aux/build-self.scm   |   7 +-
 doc/guix.texi  |  53 -
 gnu/local.mk   |   1 -
 gnu/packages/acl.scm   |   2 +-
 gnu/packages/admin.scm |   2 +-
 gnu/packages/attr.scm  |   2 +-
 gnu/packages/audio.scm |   2 +-
 gnu/packages/avahi.scm |  45 ++--
 gnu/packages/avr.scm   |   2 +-
 gnu/packages/backup.scm|   4 +-
 gnu/packages/benchmark.scm |   4 +-
 gnu/packages/bioinformatics.scm|   4 +-
 gnu/packages/ci.scm|  10 +-
 gnu/packages/compression.scm   |  46 ++--
 gnu/packages/crypto.scm|   6 +-
 gnu/packages/databases.scm |   6 +-
 gnu/packages/dns.scm   |   6 +-
 gnu/packages/emacs.scm |  96 +++-
 gnu/packages/erlang.scm|  50 ++--
 gnu/packages/flashing-tools.scm| 106 -
 gnu/packages/fontutils.scm |   2 +-
 gnu/packages/game-development.scm  |   6 +-
 gnu/packages/games.scm |   2 +-
 gnu/packages/gkrellm.scm   |  14 +-
 gnu/packages/gnustep.scm   |  39 ++--
 gnu/packages/gsasl.scm |   2 +-
 gnu/packages/gtk.scm   |   2 +-
 gnu/packages/guile.scm |  16 +-
 gnu/packages/irc.scm   |   4 +-
 gnu/packages/java.scm  |  24 +-
 gnu/packages/kde.scm   |  35 +++
 gnu/packages/ldc.scm   |   6 +
 gnu/packages/libunwind.scm |   2 +-
 gnu/packages/linux.scm |   8 +-
 gnu/packages/lout.scm  |   2 +-
 gnu/packages/mpd.scm   |   2 +-
 gnu/packages/networking.scm|   6 +-
 .../crypto++-fix-dos-in-asn.1-decoders.patch   |  65 --
 gnu/packages/python-web.scm|   4 +-
 gnu/packages/python.scm|  96 +++-
 gnu/packages/ratpoison.scm |   2 +-
 gnu/packages/skribilo.scm  |   2 +-
 gnu/packages/telephony.scm |   2 +-
 gnu/packages/terminals.scm | 110 +
 gnu/packages/texinfo.scm   |   2 +-
 gnu/packages/video.scm |   4 +-
 gnu/packages/web.scm   |  44 
 gnu/packages/xdisorg.scm   |   2 +-
 gnu/packages/xfce.scm  |   4 +-
 gnu/packages/xiph.scm  |   4 +-
 gnu/services/avahi.scm |   4 +-
 gnu/services/base.scm  | 256 -
 gnu/services/web.scm   |  27 ++-
 gnu/system/install.scm |  15 +-
 guix/build/union.scm   |   2 +-
 guix/import/utils.scm  |  12 +-
 guix/scripts/pack.scm  |  21 +-
 tests/import-utils.scm |  19 ++
 58 files changed, 940 insertions(+), 383 deletions(-)

diff --cc gnu/packages/compression.scm
index 3bf2ec1,9835735..f25c4bb
--- a/gnu/packages/compression.scm
+++ b/gnu/packages/compression.scm
@@@ -482,9 -473,9 +482,9 @@@ some compression ratio)."
   version ".tar.gz"))
   (sha256
(base32
 -   "1p8lvc22sv3damld9ng8y6i8z2dvvpsbi9v7yhr5bc2a20m8iya7"
 +   "1abbch762gv8rjr579q3qyyk6c80plklbv2mw4x0vg71dgsw9bgz"
  (build-system gnu-build-system)
- (home-page "http://www.nongnu.org/lzip/lzip.html";)
+ (home-page "https://www.nongnu.org/lzip/lzip.html";)
  (synopsis "Lossless data compressor based on the LZMA algorithm")
  (description
   "Lzip is a lossless data compressor with a user interface similar to the
diff --cc gnu/packages/fontutils.scm
index d34b4b4,387c468..664cbdb
--- a/gnu/packages/fontutils.scm
+++ b/gnu/packages/fontutils.scm
@@@ -437,11 -442,9 +437,11 @@@ resolution."
(sha256
 (base32 
"0239zvfan56w7vrppriwy77fzb10ag9llaz15nsraps2a2x6di3v"
  (build-system gnu-build-system)

01/01: Merge branch 'master' into core-updates

2018-02-13 Thread Mark H. Weaver

mhw pushed a commit to branch core-updates
in repository guix.

commit 288b8fd5e97c32d44a49612dbeef854c05ebc373
Merge: a7fb298 acff6aa
Author: Mark H Weaver 
Date:   Tue Feb 13 13:17:15 2018 -0500

Merge branch 'master' into core-updates

 .mailmap   |   23 +-
 gnu/local.mk   |3 -
 gnu/packages/bioinformatics.scm|  311 +++-
 gnu/packages/ccache.scm|   10 +-
 gnu/packages/check.scm |   17 +
 gnu/packages/compression.scm   |   17 +-
 gnu/packages/cran.scm  |  143 +-
 gnu/packages/crypto.scm|   14 +-
 gnu/packages/emacs.scm |9 +-
 gnu/packages/embedded.scm  |5 +-
 gnu/packages/golang.scm|4 +-
 gnu/packages/haskell-check.scm |  145 +-
 gnu/packages/haskell-crypto.scm|   22 +-
 gnu/packages/haskell-web.scm   |   93 +-
 gnu/packages/haskell.scm   | 1388 +-
 gnu/packages/kde-frameworks.scm|   51 +
 gnu/packages/libcanberra.scm   |6 +-
 gnu/packages/libreoffice.scm   |   70 +-
 gnu/packages/libusb.scm|4 +-
 gnu/packages/linux.scm |   18 +-
 gnu/packages/maths.scm |   10 +-
 gnu/packages/patches/mpv-CVE-2018-6360-1.patch |  138 --
 gnu/packages/patches/mpv-CVE-2018-6360-2.patch |   59 -
 gnu/packages/patches/mpv-CVE-2018-6360-3.patch |   84 --
 gnu/packages/statistics.scm|  194 +--
 gnu/packages/version-control.scm   |   12 +-
 gnu/packages/video.scm |9 +-
 gnu/packages/vim.scm   |4 +-
 gnu/packages/w3m.scm   |6 +-
 gnu/packages/web.scm   |   57 +-
 gnu/packages/xml.scm   |  123 +-
 po/guix/zh_CN.po   | 1860 +---
 32 files changed, 3415 insertions(+), 1494 deletions(-)

diff --cc gnu/packages/haskell.scm
index 5db0c79,2fc0559..b595005
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@@ -3,10 -3,10 +3,10 @@@
  ;;; Copyright © 2015 Siniša Biđin 
  ;;; Copyright © 2015 Paul van der Walt 
  ;;; Copyright © 2015 Eric Bavier 
 -;;; Copyright © 2016 Ludovic Courtès 
 +;;; Copyright © 2016, 2018 Ludovic Courtès 
  ;;; Copyright © 2016, 2017 ng0 
  ;;; Copyright © 2016 Efraim Flashner 
- ;;; Copyright © 2015, 2016, 2017 Ricardo Wurmus 
+ ;;; Copyright © 2015, 2016, 2017, 2018 Ricardo Wurmus 
  ;;; Copyright © 2016, 2017 David Craven 
  ;;; Copyright © 2017 Danny Milosavljevic 
  ;;; Copyright © 2017 Peter Mikkelsen 
diff --cc gnu/packages/libreoffice.scm
index 3c04ba8,47dd21b..9b60c06
--- a/gnu/packages/libreoffice.scm
+++ b/gnu/packages/libreoffice.scm
@@@ -944,14 -931,8 +931,14 @@@ and to return information on pronunciat
   (modify-phases %standard-phases
 (add-before 'configure 'prepare-src
   (lambda* (#:key inputs #:allow-other-keys)
-(let ((xmlsec (assoc-ref inputs "xmlsec-src")))
+(let ((gpgme (assoc-ref inputs "gpgme")))
   (substitute*
 +   "sdext/source/pdfimport/xpdfwrapper/pdfioutdev_gpl.cxx"
 +   ;; This header was renamed in Poppler 0.62.0.
 +   (("UTF8.h") "UnicodeMapFuncs.h")
 +   ;; And mapUCS2() was renamed to mapUTF16().
 +   (("UCS2") "UTF16"))
 + (substitute*
 (list "sysui/CustomTarget_share.mk"
   "solenv/gbuild/gbuild.mk"
   "solenv/gbuild/platform/unxgcc.mk")
diff --cc gnu/packages/xml.scm
index 12a68ab,919043a..055bf8d
--- a/gnu/packages/xml.scm
+++ b/gnu/packages/xml.scm
@@@ -3,9 -3,9 +3,9 @@@
  ;;; Copyright © 2013, 2015 Andreas Enge 
  ;;; Copyright © 2015 Eric Bavier 
  ;;; Copyright © 2015 Sou Bunnbu 
- ;;; Copyright © 2015, 2016, 2017 Ricardo Wurmus 
+ ;;; Copyright © 2015, 2016, 2017, 2018 Ricardo Wurmus 
  ;;; Copyright © 2015, 2016, 2017 Mark H Weaver 
 -;;; Copyright © 2015, 2016 Efraim Flashner 
 +;;; Copyright © 2015, 2016, 2017 Efraim Flashner 
  ;;; Copyright © 2015 Raimon Grau 
  ;;; Copyright © 2016 Mathieu Lirzin 
  ;;; Copyright © 2016, 2017 Leo Famulari

01/01: Merge branch 'master' into core-updates

2018-02-11 Thread Mark H. Weaver

mhw pushed a commit to branch core-updates
in repository guix.

commit a7fb29866520d5661e0ac8e47957c91a2a43e11e
Merge: 6730d89 31c7002
Author: Mark H Weaver 
Date:   Sun Feb 11 04:05:07 2018 -0500

Merge branch 'master' into core-updates

 doc/guix.texi  |  35 +-
 gnu/local.mk   |  17 +-
 gnu/packages/admin.scm |   4 +-
 gnu/packages/avahi.scm |  27 +-
 gnu/packages/code.scm  |  60 ++-
 gnu/packages/compression.scm   |  15 +-
 gnu/packages/emacs.scm |   2 +
 gnu/packages/games.scm |  25 +-
 gnu/packages/glib.scm  |  11 +-
 gnu/packages/guile.scm |  10 +-
 gnu/packages/image.scm |  12 +
 gnu/packages/java.scm  | 587 +
 gnu/packages/linux.scm |  12 +-
 gnu/packages/mail.scm  |   8 +-
 gnu/packages/mtools.scm|   5 +-
 gnu/packages/music.scm |  18 +-
 gnu/packages/networking.scm|   4 +-
 gnu/packages/package-management.scm|   6 +-
 .../clementine-remove-crypto++-dependency.patch|  19 +
 .../patches/emacs-browse-at-remote-cgit-gnu.patch  |  59 +++
 .../patches/java-xerces-bootclasspath.patch|  38 ++
 .../patches/java-xerces-build_dont_unzip.patch |  44 ++
 .../patches/java-xerces-xjavac_taskdef.patch   |  45 ++
 gnu/packages/patches/libtasn1-CVE-2018-6003.patch  |  73 +++
 gnu/packages/patches/libtiff-CVE-2017-18013.patch  |  45 ++
 gnu/packages/patches/libtiff-CVE-2017-9935.patch   | 162 ++
 gnu/packages/patches/zziplib-CVE-2017-5974.patch   |  28 -
 gnu/packages/patches/zziplib-CVE-2017-5975.patch   |  32 --
 gnu/packages/patches/zziplib-CVE-2017-5976.patch   |  61 ---
 gnu/packages/patches/zziplib-CVE-2017-5978.patch   |  37 --
 gnu/packages/patches/zziplib-CVE-2017-5979.patch   |  19 -
 gnu/packages/patches/zziplib-CVE-2017-5981.patch   |  19 -
 gnu/packages/qt.scm|   6 +-
 gnu/packages/ruby.scm  |   2 +-
 gnu/packages/samba.scm |   4 +-
 gnu/packages/shells.scm|   6 +-
 gnu/packages/terminals.scm |   6 +-
 gnu/packages/tls.scm   |   9 +
 gnu/packages/video.scm |   4 +-
 gnu/packages/virtualization.scm|   7 +-
 gnu/packages/web.scm   |  38 ++
 gnu/packages/xml.scm   | 489 +
 gnu/services/avahi.scm |   6 +-
 gnu/services/games.scm |  81 +++
 guix/licenses.scm  |   6 +
 guix/ssh.scm   |  17 +-
 46 files changed, 1946 insertions(+), 274 deletions(-)

diff --cc gnu/local.mk
index 0a7810d,67623c6..030ea83
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@@ -579,10 -580,8 +580,11 @@@ dist_patch_DATA =

%D%/packages/patches/chmlib-inttypes.patch  \
%D%/packages/patches/clang-libc-search-path.patch   \
%D%/packages/patches/clang-3.8-libc-search-path.patch   \
 +  %D%/packages/patches/clang-runtime-asan-build-fixes.patch   \
 +  %D%/packages/patches/clang-runtime-esan-build-fixes.patch   \
+   %D%/packages/patches/clementine-remove-crypto++-dependency.patch\
%D%/packages/patches/clementine-use-openssl.patch   \
 +  %D%/packages/patches/clisp-glibc-2.26.patch \
%D%/packages/patches/clisp-remove-failing-test.patch\
%D%/packages/patches/clucene-pkgconfig.patch\
%D%/packages/patches/clx-remove-demo.patch  \
@@@ -775,8 -776,15 +778,11 @@@
%D%/packages/patches/isl-0.11.1-aarch64-support.patch   \
%D%/packages/patches/jacal-fix-texinfo.patch\
%D%/packages/patches/java-powermock-fix-java-files.patch\
+   %D%/packages/patches/java-xerces-bootclasspath.patch\
+   %D%/packages/patches/java-xerces-build_dont_unzip.patch \
+   %D%/packages/patches/java-xerces-xjavac_taskdef.patch   \
%D%/packages/patches/jemalloc-arm-address-bits.patch\
%D%/packages/patches/jbig2dec-ignore-testtest.patch \
 -  %D%/packages/patches/jbig2dec-CVE-2016-9601.patch   \
 -  %D%/packages/patches/jbig2dec-CVE-2017-7885.patch   \
 -  %D%/packages/patches/jbig2dec-CVE-2017-7975.patch   \
 -  %D%/packages/patches/jbig2dec-CVE-2017-7976.patch   \
%D%/packages/patches/jq-CVE-2015-8863.patch

01/01: Merge branch 'master' into core-updates

2018-02-08 Thread Mark H. Weaver

mhw pushed a commit to branch core-updates
in repository guix.

commit efe2a2833c6d306d0c60127fdfebaff6dc415b4c
Merge: 53f826c 8d0edc8
Author: Mark H Weaver 
Date:   Fri Feb 9 01:46:34 2018 -0500

Merge branch 'master' into core-updates

 Makefile.am|   3 +
 configure.ac   |  10 +-
 doc/guix.texi  | 109 ++-
 etc/guix-daemon.cil.in | 285 +++
 gnu/build/linux-boot.scm   |   1 -
 gnu/local.mk   |  13 +-
 gnu/packages/admin.scm |  61 +++-
 gnu/packages/audio.scm |  31 +-
 gnu/packages/code.scm  |   4 +-
 gnu/packages/compression.scm   |   7 +-
 gnu/packages/conky.scm |   4 +-
 gnu/packages/cran.scm  | 213 +-
 gnu/packages/databases.scm |   4 +-
 gnu/packages/dav.scm   |   4 +-
 gnu/packages/documentation.scm |  18 +-
 gnu/packages/emacs.scm | 126 +++-
 gnu/packages/gnome.scm |   6 +-
 gnu/packages/gnunet.scm|   5 +-
 gnu/packages/gps.scm   |  71 -
 gnu/packages/guile.scm |   7 +-
 gnu/packages/julia.scm |  12 +
 gnu/packages/linux.scm |   8 +-
 gnu/packages/lua.scm   |  28 +-
 gnu/packages/mail.scm  |  15 +-
 gnu/packages/maths.scm |  34 +++
 gnu/packages/mc.scm|  15 +-
 gnu/packages/mpi.scm   |  23 +-
 gnu/packages/music.scm |  29 +-
 gnu/packages/networking.scm|  21 +-
 gnu/packages/nim.scm   |  13 +-
 gnu/packages/onc-rpc.scm   |   1 +
 gnu/packages/password-utils.scm|   4 +-
 gnu/packages/patches/gpsbabel-minizip.patch|  13 +
 gnu/packages/patches/gpsbabel-qstring.patch|  69 +
 .../patches/hwloc-tests-without-sysfs.patch|  42 +++
 gnu/packages/patches/luajit-symlinks.patch |  25 --
 gnu/packages/patches/mpv-CVE-2018-6360-1.patch | 138 +
 gnu/packages/patches/mpv-CVE-2018-6360-2.patch |  59 
 gnu/packages/patches/mpv-CVE-2018-6360-3.patch |  84 ++
 gnu/packages/patches/mupdf-CVE-2017-17858.patch| 111 
 gnu/packages/patches/p7zip-CVE-2017-17969.patch|  35 +++
 gnu/packages/pdf.scm   |   3 +-
 gnu/packages/perl-check.scm|   4 +-
 gnu/packages/python.scm| 148 +-
 gnu/packages/rdf.scm   |   5 +-
 gnu/packages/sawfish.scm   |   5 +-
 gnu/packages/scheme.scm|  47 +--
 gnu/packages/shells.scm|   4 +-
 gnu/packages/ssh.scm   |  59 ++--
 gnu/packages/syncthing.scm | 316 +++--
 gnu/packages/tcl.scm   |   5 +-
 gnu/packages/upnp.scm  |   4 +-
 gnu/packages/version-control.scm   |   6 +-
 gnu/packages/video.scm |   5 +-
 gnu/packages/web.scm   |  16 +-
 gnu/packages/xorg.scm  |   4 +-
 guix/build-system/emacs.scm|   3 +-
 guix/build/emacs-build-system.scm  |  92 --
 guix/build/emacs-utils.scm |  11 +-
 59 files changed, 2237 insertions(+), 261 deletions(-)

diff --cc gnu/local.mk
index 3da59ec,2ef483d..f20d104
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@@ -719,8 -717,10 +719,10 @@@ dist_patch_DATA =

%D%/packages/patches/gobject-introspection-absolute-shlib-path.patch \
%D%/packages/patches/gobject-introspection-cc.patch \
%D%/packages/patches/gobject-introspection-girepository.patch   \
 +  %D%/packages/patches/gpm-glibc-2.26.patch   \
+   %D%/packages/patches/gpsbabel-minizip.patch \
+   %D%/packages/patches/gpsbabel-qstring.patch \
%D%/packages/patches/graphite2-ffloat-store.patch   \
 -  %D%/packages/patches/grep-gnulib-lock.patch   \
%D%/packages/patches/grep-timing-sensitive-test.patch   \
%D%/packages/patches/groff-source-date-epoch.patch  \
%D%/packages/patches/gsl-test-i686.patch\
@@@ -900,8 -922,10 +905,9 @@@
%D%/packages/patches/mozj

01/01: Merge branch 'master' into core-updates

2018-02-03 Thread Mark H. Weaver

mhw pushed a commit to branch core-updates
in repository guix.

commit 919d1f267b369f81f5b409e7e2960318f76c9aed
Merge: e7ca634 930ebe1
Author: Mark H Weaver 
Date:   Sun Feb 4 00:13:42 2018 -0500

Merge branch 'master' into core-updates

 gnu/packages/linux.scm | 16 
 1 file changed, 8 insertions(+), 8 deletions(-)

01/01: Merge branch 'master' into core-updates

2018-02-03 Thread Mark H. Weaver

mhw pushed a commit to branch core-updates
in repository guix.

commit e7ca634912db59596f67dc805d7b3604c5312eeb
Merge: b0881e0 0903a51
Author: Mark H Weaver 
Date:   Sat Feb 3 22:46:07 2018 -0500

Merge branch 'master' into core-updates

 gnu/packages/algebra.scm  |   4 +-
 gnu/packages/astronomy.scm|   2 +-
 gnu/packages/base.scm |   1 +
 gnu/packages/bioinformatics.scm   |   6 +-
 gnu/packages/bootloaders.scm  |   2 +-
 gnu/packages/cdrom.scm|  56 -
 gnu/packages/check.scm|  82 ++
 gnu/packages/databases.scm|  80 +++---
 gnu/packages/emacs.scm|  28 ++-
 gnu/packages/fonts.scm|  68 +++
 gnu/packages/golang.scm   |  23 +
 gnu/packages/gps.scm  |   1 +
 gnu/packages/haskell.scm  |  23 +
 gnu/packages/linux.scm|   2 +-
 gnu/packages/machine-learning.scm |  35 
 gnu/packages/man.scm  |   6 +-
 gnu/packages/maths.scm|  57 -
 gnu/packages/multiprecision.scm   |  40 +
 gnu/packages/music.scm|  30 ++-
 gnu/packages/ncdu.scm |   7 +-
 gnu/packages/networking.scm   |  15 ++--
 gnu/packages/ocaml.scm| 171 --
 gnu/packages/python-web.scm   |   4 +-
 gnu/packages/python.scm   |   4 +-
 gnu/packages/wm.scm   |  22 +++--
 gnu/packages/xfce.scm |  38 +
 26 files changed, 687 insertions(+), 120 deletions(-)

diff --cc gnu/packages/check.scm
index dd54bca,1276c0f..1e2eabe
--- a/gnu/packages/check.scm
+++ b/gnu/packages/check.scm
@@@ -49,7 -49,7 +49,8 @@@
#:use-module (gnu packages autotools)
#:use-module (gnu packages bash)
#:use-module (gnu packages compression)
 +  #:use-module (gnu packages llvm)
+   #:use-module (gnu packages golang)
#:use-module (gnu packages python)
#:use-module (gnu packages python-web)
#:use-module (gnu packages time)
diff --cc gnu/packages/emacs.scm
index faf4b13,9523f14..62cc916
--- a/gnu/packages/emacs.scm
+++ b/gnu/packages/emacs.scm
@@@ -1,7 -1,7 +1,7 @@@
  ;;; GNU Guix --- Functional package management for GNU
  ;;; Copyright © 2014 Taylan Ulrich Bayirli/Kammer 
- ;;; Copyright © 2013, 2014, 2015, 2016, 2017 Ludovic Courtès 
+ ;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018 Ludovic Courtès 

 -;;; Copyright © 2014, 2015, 2016 Mark H Weaver 
 +;;; Copyright © 2014, 2015, 2016, 2017 Mark H Weaver 
  ;;; Copyright © 2014, 2015, 2016, 2017 Alex Kost 
  ;;; Copyright © 2015 Federico Beffa 
  ;;; Copyright © 2015, 2016, 2017, 2018 Ricardo Wurmus

01/01: Merge branch 'master' into core-updates

2018-01-25 Thread Mark H. Weaver

mhw pushed a commit to branch core-updates
in repository guix.

commit b89d8a4271c8ef02c9b1e51a2c86341cdc09c760
Merge: 7bf0170 a81f7eb
Author: Mark H Weaver 
Date:   Fri Jan 26 00:15:26 2018 -0500

Merge branch 'master' into core-updates

 gnu/local.mk   |   2 +
 gnu/packages/audio.scm |  52 
 gnu/packages/avahi.scm |  36 ++
 gnu/packages/bioinformatics.scm|   8 +-
 gnu/packages/cobol.scm |  24 +++-
 gnu/packages/conky.scm |  19 +--
 gnu/packages/databases.scm |   4 +-
 gnu/packages/datastructures.scm|   4 +-
 gnu/packages/dc.scm|   7 +-
 gnu/packages/dns.scm   |   4 +-
 gnu/packages/elf.scm   |   9 +-
 gnu/packages/emacs.scm | 137 
 gnu/packages/gcc.scm   |   6 +-
 gnu/packages/glib.scm  |  30 +++--
 gnu/packages/iso-codes.scm |  43 +++
 gnu/packages/linux.scm |  20 ++-
 gnu/packages/mail.scm  |   1 +
 gnu/packages/music.scm |   2 +-
 gnu/packages/package-management.scm|  67 ++
 gnu/packages/patches/dovecot-CVE-2017-15132.patch  |  36 ++
 .../reposurgeon-add-missing-docbook-files.patch|  22 
 gnu/packages/perl.scm  |   4 +-
 gnu/packages/python-crypto.scm |  43 +++
 gnu/packages/qt.scm| 141 ++---
 gnu/packages/version-control.scm   |  50 ++--
 gnu/packages/video.scm |  31 +
 gnu/packages/webkit.scm|   4 +-
 gnu/packages/wm.scm|   6 +-
 gnu/services/databases.scm |  40 +++---
 guix/build/dub-build-system.scm|   9 +-
 30 files changed, 676 insertions(+), 185 deletions(-)

diff --cc gnu/local.mk
index 0d18cec,80d6a8d..9df027a
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@@ -609,10 -607,9 +609,11 @@@ dist_patch_DATA =

%D%/packages/patches/deja-dup-use-ref-keyword-for-iter.patch\
%D%/packages/patches/dfu-programmer-fix-libusb.patch\
%D%/packages/patches/diffutils-gets-undeclared.patch\
 +  %D%/packages/patches/diffutils-getopt.patch \
 +  %D%/packages/patches/docbook-xsl-nonrecursive-string-subst.patch\
%D%/packages/patches/doc++-include-directives.patch \
%D%/packages/patches/doc++-segfault-fix.patch   \
+   %D%/packages/patches/dovecot-CVE-2017-15132.patch   \
%D%/packages/patches/doxygen-test.patch \
%D%/packages/patches/dvd+rw-tools-add-include.patch \
%D%/packages/patches/eigen-arm-neon-fixes.patch \
diff --cc gnu/packages/gcc.scm
index b1fc32b,48e7b8e..2c7650d
--- a/gnu/packages/gcc.scm
+++ b/gnu/packages/gcc.scm
@@@ -1,9 -1,9 +1,9 @@@
  ;;; GNU Guix --- Functional package management for GNU
  ;;; Copyright © 2012, 2013, 2014, 2015, 2016, 2017 Ludovic Courtès 

- ;;; Copyright © 2014, 2015 Mark H Weaver 
+ ;;; Copyright © 2014, 2015, 2018 Mark H Weaver 
  ;;; Copyright © 2014, 2015, 2016, 2017 Ricardo Wurmus 
  ;;; Copyright © 2015 Andreas Enge 
 -;;; Copyright © 2015, 2016, 2017 Efraim Flashner 
 +;;; Copyright © 2015, 2016, 2017, 2018 Efraim Flashner 
  ;;; Copyright © 2016 Carlos Sánchez de La Lama 
  ;;;
  ;;; This file is part of GNU Guix.

01/01: Merge branch 'master' into core-updates

2018-01-19 Thread Mark H. Weaver

mhw pushed a commit to branch core-updates
in repository guix.

commit e074a655dd6497daafbd62737e3b63f3d5aa7985
Merge: 6d7b26a ccb5cac
Author: Mark H Weaver 
Date:   Fri Jan 19 23:59:20 2018 -0500

Merge branch 'master' into core-updates

 Makefile.am|   4 +
 configure.ac   |   7 +
 doc/contributing.texi  |   7 +-
 doc/guix.texi  | 243 -
 doc/local.mk   |   8 +-
 etc/completion/fish/guix.fish  | 548 +
 gnu/build/file-systems.scm |   4 +-
 gnu/build/linux-boot.scm   |   2 +-
 gnu/build/linux-container.scm  |  14 +-
 gnu/build/vm.scm   |   8 +-
 gnu/local.mk   |  11 +-
 gnu/packages/admin.scm |  28 +-
 gnu/packages/algebra.scm   |   8 +-
 gnu/packages/android.scm   |   5 +-
 gnu/packages/aspell.scm|  18 +-
 gnu/packages/audio.scm |  30 +-
 gnu/packages/backup.scm|  54 +-
 gnu/packages/bittorrent.scm|   2 +
 gnu/packages/boost.scm |   5 +-
 gnu/packages/bootloaders.scm   |  11 +-
 gnu/packages/c.scm |   7 +-
 gnu/packages/ccache.scm|  15 +-
 gnu/packages/check.scm |   2 +-
 gnu/packages/code.scm  |  20 +-
 gnu/packages/compression.scm   |  15 +-
 gnu/packages/cpp.scm   |  42 +-
 gnu/packages/cups.scm  |  38 +-
 gnu/packages/databases.scm |  27 +-
 gnu/packages/debug.scm |  35 +-
 gnu/packages/disk.scm  |   2 +-
 gnu/packages/dns.scm   |   8 +-
 gnu/packages/emacs.scm |  88 +++-
 gnu/packages/engineering.scm   |  13 +-
 gnu/packages/file-systems.scm  |  45 +-
 gnu/packages/flashing-tools.scm|  11 +-
 gnu/packages/game-development.scm  |  90 +++-
 gnu/packages/games.scm |   7 +
 gnu/packages/geo.scm   |   5 +-
 gnu/packages/gl.scm|   6 +-
 gnu/packages/glib.scm  |  23 +-
 gnu/packages/gnupg.scm |  14 +-
 gnu/packages/gps.scm   |  16 +-
 gnu/packages/haskell-check.scm |  10 +-
 gnu/packages/haskell.scm   |  34 +-
 gnu/packages/image-viewers.scm |  32 +-
 gnu/packages/java.scm  |  98 ++--
 gnu/packages/kde.scm   |   7 +-
 gnu/packages/language.scm  |   3 +-
 gnu/packages/libedit.scm   |  10 +-
 gnu/packages/linux.scm |  32 +-
 gnu/packages/lxde.scm  |  36 +-
 gnu/packages/mail.scm  |  20 +-
 gnu/packages/mate.scm  |   4 +-
 gnu/packages/mc.scm|  21 +-
 gnu/packages/mp3.scm   |   7 +-
 gnu/packages/mpd.scm   |  34 +-
 gnu/packages/multiprecision.scm|  65 +--
 gnu/packages/ncurses.scm   |   7 +-
 gnu/packages/ninja.scm |  52 +-
 gnu/packages/package-management.scm|  83 ++--
 gnu/packages/parallel.scm  |  22 +-
 gnu/packages/patches/dtc-32-bits-check.patch   | 134 -
 gnu/packages/patches/dtc-format-modifier.patch |  38 --
 .../patches/emacs-json-reformat-fix-tests.patch|  32 ++
 gnu/packages/patches/libexif-CVE-2016-6328.patch   |  72 +++
 .../patches/lxterminal-CVE-2016-10369.patch|  37 --
 gnu/packages/patches/ninja-zero-mtime.patch|  19 -
 .../slurm-configure-remove-nonfree-contribs.patch  |  45 --
 .../transmission-fix-dns-rebinding-vuln.patch  | 302 
 .../patches/webkitgtk-mitigate-spectre.patch   | 107 
 gnu/packages/patchutils.scm|  15 +-
 gnu/packages/pcre.scm  |   4 +-
 gnu/packages/photo.scm |  14 +-
 gnu/packages/python-crypto.scm |  37 ++
 gnu/packages/python.scm|  63 ++-
 gnu/packages/readline.scm  |  15 +-
 gnu/packages/ruby.scm  |  90 +---
 gnu/packa

01/01: Merge branch 'master' into core-updates

2018-01-04 Thread Mark H. Weaver

mhw pushed a commit to branch core-updates
in repository guix.

commit 247d23680a222bc5440dec7c3fe0d36ad463a121
Merge: e21ce0f 72687ca
Author: Mark H Weaver 
Date:   Thu Jan 4 21:21:04 2018 -0500

Merge branch 'master' into core-updates

 gnu/packages/algebra.scm  |   6 +-
 gnu/packages/emacs.scm|  37 +++-
 gnu/packages/embedded.scm | 120 ++
 gnu/packages/file.scm |   2 +-
 gnu/packages/fonts.scm|   4 +-
 gnu/packages/game-development.scm |   4 +-
 gnu/packages/geo.scm  |  51 
 gnu/packages/graphics.scm |   8 +--
 gnu/packages/linux.scm|  12 ++--
 gnu/packages/python.scm   |  69 ++
 gnu/packages/syndication.scm  |  76 +++-
 gnu/packages/video.scm|   7 +++
 gnu/packages/web.scm  |  45 --
 13 files changed, 387 insertions(+), 54 deletions(-)

diff --cc gnu/packages/file.scm
index 63aa3fa,34a4bba..0473c51
--- a/gnu/packages/file.scm
+++ b/gnu/packages/file.scm
@@@ -47,6 -48,13 +47,6 @@@
  "The file command is a file type guesser, a command-line tool that tells
  you in words what kind of data a file contains.  It does not rely on filename
  extensions to tell you the type of a file, but looks at the actual contents
- of the file.")
+ of the file.  This package provides the libmagic library.")
 (license bsd-2)
 -   (home-page "http://www.darwinsys.com/file/";)))
 -
 -(define file/fixed
 -  (package
 -(inherit file)
 -(source (origin
 -  (inherit (package-source file))
 -  (patches (search-patches "file-CVE-2017-1000249.patch"))
 +   (home-page "https://www.darwinsys.com/file/";)))

01/01: Merge branch 'master' into core-updates

2017-12-21 Thread Leo Famulari

lfam pushed a commit to branch core-updates
in repository guix.

commit f76fc968669721e3baa6a0662da8e9e9f5da66cf
Merge: 24ee3b2 5dc0e0b
Author: Leo Famulari 
Date:   Thu Dec 21 13:58:35 2017 -0500

Merge branch 'master' into core-updates

 doc/guix.texi  |   4 +-
 gnu/local.mk   |  10 +-
 gnu/packages/avr.scm   |   2 +-
 gnu/packages/backup.scm|   3 +-
 gnu/packages/bioinformatics.scm|  37 +++---
 gnu/packages/compression.scm   |  12 +-
 gnu/packages/cran.scm  |  80 ++--
 gnu/packages/games.scm |  48 +++-
 gnu/packages/gimp.scm  |   4 +-
 gnu/packages/gnupg.scm |  31 +++--
 gnu/packages/imagemagick.scm   |   4 +-
 gnu/packages/irc.scm   |  44 +--
 gnu/packages/linux.scm |  36 --
 gnu/packages/mail.scm  |   4 +-
 gnu/packages/maths.scm |   4 +-
 gnu/packages/messaging.scm |  14 +--
 gnu/packages/mpd.scm   |   4 +-
 gnu/packages/package-management.scm|   4 +-
 gnu/packages/password-utils.scm|   4 +-
 .../patches/libarchive-CVE-2017-14502.patch|  40 ++
 gnu/packages/patches/libexif-CVE-2017-7544.patch   |  29 +
 gnu/packages/patches/links-CVE-2017-4.patch|  99 +++
 gnu/packages/patches/mupdf-CVE-2017-14685.patch|  34 --
 gnu/packages/patches/mupdf-CVE-2017-14686.patch|  34 --
 gnu/packages/patches/mupdf-CVE-2017-14687.patch| 130 
 gnu/packages/patches/mupdf-CVE-2017-15587.patch|  25 
 ...atch => mupdf-build-with-latest-openjpeg.patch} |   8 +-
 gnu/packages/patches/xboing-CVE-2004-0149.patch| 134 +
 gnu/packages/pdf.scm   |  13 +-
 gnu/packages/perl-check.scm|  24 
 gnu/packages/photo.scm |   2 +
 gnu/packages/python.scm|  27 +
 gnu/packages/security-token.scm|   1 +
 gnu/packages/statistics.scm|  65 +-
 gnu/packages/textutils.scm |   9 +-
 gnu/packages/tls.scm   |   4 +-
 gnu/packages/web-browsers.scm  |   1 +
 gnu/packages/web.scm   |  14 ++-
 gnu/packages/webkit.scm|   4 +-
 gnu/packages/xfce.scm  |   5 +-
 gnu/packages/xml.scm   |   9 ++
 gnu/services/base.scm  |  18 +++
 gnu/tests/web.scm  |   2 +-
 guix/upstream.scm  |   8 +-
 44 files changed, 716 insertions(+), 372 deletions(-)

diff --cc gnu/local.mk
index 84d6df7,20b3c3e..fbc5f52
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@@ -873,13 -900,10 +876,9 @@@ dist_patch_DATA =

%D%/packages/patches/mozjs38-tracelogger.patch  \
%D%/packages/patches/mozjs38-version-detection.patch\
%D%/packages/patches/mumps-build-parallelism.patch  \
-   %D%/packages/patches/mupdf-build-with-openjpeg-2.1.patch\
-   %D%/packages/patches/mupdf-CVE-2017-14685.patch \
-   %D%/packages/patches/mupdf-CVE-2017-14686.patch \
-   %D%/packages/patches/mupdf-CVE-2017-14687.patch \
-   %D%/packages/patches/mupdf-CVE-2017-15587.patch \
+   %D%/packages/patches/mupdf-build-with-latest-openjpeg.patch \
%D%/packages/patches/mupen64plus-ui-console-notice.patch\
%D%/packages/patches/mutt-store-references.patch\
 -  %D%/packages/patches/ncurses-CVE-2017-10684-10685.patch \
%D%/packages/patches/net-tools-bitrot.patch \
%D%/packages/patches/netcdf-date-time.patch \
%D%/packages/patches/netcdf-tst_h_par.patch \
diff --cc gnu/packages/backup.scm
index 28d6183,fab71d0..db1af03
--- a/gnu/packages/backup.scm
+++ b/gnu/packages/backup.scm
@@@ -195,10 -195,9 +195,11 @@@ backups (called chunks) to allow easy b
 (method url-fetch)
 (uri (string-append "http://libarchive.org/downloads/libarchive-";
 version ".tar.gz"))
-(patches (search-patches "libarchive-CVE-2017-14166.patch"))
++   (patches (search-patches "libarchive-CVE-2017-14166.patch"
++"libarchive-CVE-2017-14502.patch"))
 (sha256
  (base32
 - "1rr40hxlm9vy5z2zb5w7pyfkgd1a4s061qapm83s19accb8mpji9"
 + "1km0mzfl6in7l5vz9kl09a88ajx562rw93ng9h2jqa

01/01: Merge branch 'master' into core-updates

2017-12-07 Thread Marius Bakke

mbakke pushed a commit to branch core-updates
in repository guix.

commit 9e111db4535b3cd5729e37294ae51d95240334b4
Merge: 92b61d3 cf69135
Author: Marius Bakke 
Date:   Thu Dec 7 18:26:11 2017 +0100

Merge branch 'master' into core-updates

 NEWS| 731 +++-
 build-aux/build-self.scm|  21 +-
 doc/guix.texi   |   6 +-
 gnu/packages/admin.scm  |  13 +-
 gnu/packages/bioinformatics.scm |  28 +-
 gnu/packages/cdrom.scm  |   5 +-
 gnu/packages/commencement.scm   |   3 +-
 gnu/packages/connman.scm|   7 +-
 gnu/packages/cups.scm   |  10 +-
 gnu/packages/databases.scm  |  16 +-
 gnu/packages/display-managers.scm   |  21 +-
 gnu/packages/engineering.scm|  10 +-
 gnu/packages/fontutils.scm  |   9 +-
 gnu/packages/ghostscript.scm|   7 +
 gnu/packages/gnunet.scm |   4 +-
 gnu/packages/gnustep.scm|  33 +-
 gnu/packages/guile-wm.scm   | 206 +-
 gnu/packages/haskell-check.scm  |  30 +-
 gnu/packages/haskell-web.scm|  25 +-
 gnu/packages/haskell.scm|   8 +-
 gnu/packages/java.scm   |  18 +-
 gnu/packages/linux.scm  |  12 +-
 gnu/packages/lua.scm|  14 +-
 gnu/packages/messaging.scm  |   2 +-
 gnu/packages/music.scm  |   8 +-
 gnu/packages/openstack.scm  |   6 +-
 gnu/packages/package-management.scm |   8 +-
 gnu/packages/photo.scm  |   4 +-
 gnu/packages/regex.scm  |   4 +-
 gnu/packages/syncthing.scm  |  16 +-
 gnu/packages/tls.scm|   6 +-
 gnu/packages/xdisorg.scm|  19 +-
 gnu/services/base.scm   |  56 ++-
 gnu/services/ssh.scm|  12 +-
 gnu/system/examples/vm-image.tmpl   |   6 +-
 gnu/system/install.scm  |  10 +-
 gnu/tests.scm   |   6 +-
 gnu/tests/install.scm   |  29 +-
 gnu/tests/nfs.scm   |   6 +-
 guix/build/syscalls.scm |  19 +
 guix/packages.scm   |  20 +-
 tests/guix-system.sh|   9 +-
 tests/system.scm|   9 +-
 43 files changed, 1174 insertions(+), 318 deletions(-)

01/01: Merge branch 'master' into core-updates

2017-11-19 Thread Marius Bakke

mbakke pushed a commit to branch core-updates
in repository guix.

commit 2dd12924cf4a30a96262b6d392fcde58c9f10d4b
Merge: 259b4f3 a93447b
Author: Marius Bakke 
Date:   Sun Nov 19 15:01:00 2017 +0100

Merge branch 'master' into core-updates

 Makefile.am|8 +-
 build-aux/hydra/gnu-system.scm |   34 +-
 doc/contributing.texi  |   12 +-
 doc/guix.texi  |  241 +-
 gnu.scm|  100 +-
 gnu/build/linux-boot.scm   |   43 +-
 gnu/local.mk   |   23 +-
 gnu/packages.scm   |   10 +-
 gnu/packages/accessibility.scm |2 +-
 gnu/packages/admin.scm |   17 +-
 gnu/packages/aidc.scm  |7 +-
 gnu/packages/android.scm   |1 +
 gnu/packages/aspell.scm|2 +
 gnu/packages/audio.scm |  100 +-
 gnu/packages/autotools.scm |2 +-
 .../{4.13-x86_64.conf => 4.14-arm.conf}| 7397 +---
 .../linux-libre/{4.13-i686.conf => 4.14-i686.conf} |  324 +-
 .../{4.13-x86_64.conf => 4.14-x86_64.conf} |  330 +-
 gnu/packages/backup.scm|8 +-
 gnu/packages/benchmark.scm |4 +-
 gnu/packages/bioinformatics.scm| 1136 ++-
 gnu/packages/bittorrent.scm|   15 +-
 gnu/packages/bootloaders.scm   |   29 +-
 gnu/packages/calendar.scm  |2 +
 gnu/packages/certs.scm |4 +-
 gnu/packages/check.scm | 1437 +++-
 gnu/packages/compression.scm   |  260 +-
 gnu/packages/cran.scm  |  325 +-
 gnu/packages/crypto.scm|  101 +-
 gnu/packages/cups.scm  |   36 +
 gnu/packages/cyrus-sasl.scm|2 +-
 gnu/packages/databases.scm |  661 +-
 gnu/packages/dav.scm   |4 +-
 gnu/packages/django.scm|7 +-
 gnu/packages/docker.scm|3 +-
 gnu/packages/ebook.scm |   14 +-
 gnu/packages/emacs.scm |   82 +-
 gnu/packages/engineering.scm   |  314 +-
 gnu/packages/enlightenment.scm |2 +-
 gnu/packages/file-systems.scm  |  118 +
 gnu/packages/finance.scm   |   34 +-
 gnu/packages/firmware.scm  |6 +-
 gnu/packages/fontutils.scm |4 +-
 gnu/packages/freedesktop.scm   |6 +-
 gnu/packages/game-development.scm  |   10 +-
 gnu/packages/games.scm |2 +
 gnu/packages/gcc.scm   |1 +
 gnu/packages/glib.scm  |9 +-
 gnu/packages/gnome.scm |  154 +-
 gnu/packages/gnucash.scm   |   13 +-
 gnu/packages/gnupg.scm |  127 +-
 gnu/packages/gnuzilla.scm  |   63 +-
 gnu/packages/graph.scm |4 +-
 gnu/packages/graphviz.scm  |   28 +
 gnu/packages/guile.scm |6 +-
 gnu/packages/haskell-check.scm |  728 ++
 gnu/packages/haskell-crypto.scm|  530 ++
 gnu/packages/haskell-web.scm   |  845 +++
 gnu/packages/haskell.scm   | 2183 +-
 gnu/packages/ibus.scm  |9 +-
 gnu/packages/idris.scm |2 +
 gnu/packages/image-viewers.scm |   13 +-
 gnu/packages/image.scm |1 +
 gnu/packages/imagemagick.scm   |4 +-
 gnu/packages/irc.scm   |7 +-
 gnu/packages/iso-codes.scm |4 +-
 gnu/packages/java.scm  |  766 +-
 gnu/packages/javascript.scm|   34 +
 gnu/packages/jrnl.scm  |5 +-
 gnu/packages/kde-frameworks.scm|  534 +-
 gnu/packages/kde.scm   |6 +-
 gnu/packages/kodi.scm  |   60 +
 gnu/packages/language.scm  |1 +
 gnu/packages/ldc.scm   |1 +
 gnu/packages/libffi.scm|1 +
 gnu/packages/libreoffice.scm   |   48 +-
 gnu/packages/libupnp.scm

01/01: Merge branch 'master' into core-updates

2017-10-25 Thread Tobias Geerinckx-Rice

nckx pushed a commit to branch core-updates
in repository guix.

commit b7883b111d92746ff3bedb6f4bb4c1578068fc59
Merge: c27e8c1 63bbf38
Author: Tobias Geerinckx-Rice 
Date:   Wed Oct 25 20:02:08 2017 +0200

Merge branch 'master' into core-updates

 gnu/local.mk   |   1 +
 gnu/packages/bioinformatics.scm|   9 +-
 gnu/packages/cran.scm  |   2 +
 gnu/packages/crypto.scm|  32 ++
 gnu/packages/databases.scm |  16 +
 gnu/packages/glib.scm  |  61 ++-
 gnu/packages/gnunet.scm|   4 +-
 gnu/packages/gnupg.scm |  90 +
 gnu/packages/golang.scm|   6 +-
 gnu/packages/maths.scm |  41 +-
 gnu/packages/music.scm |  28 ++
 .../crypto++-fix-dos-in-asn.1-decoders.patch   |  65 
 gnu/packages/perl.scm  | 415 -
 gnu/packages/sssd.scm  |  15 +-
 gnu/packages/statistics.scm|  25 ++
 gnu/packages/tor.scm   |   4 +-
 gnu/packages/web.scm   |  42 +++
 gnu/packages/xml.scm   |   6 +-
 18 files changed, 801 insertions(+), 61 deletions(-)

diff --cc gnu/packages/xml.scm
index 13eb608,4e69449..2364184
--- a/gnu/packages/xml.scm
+++ b/gnu/packages/xml.scm
@@@ -57,14 -57,15 +57,14 @@@
  (define-public expat
(package
  (name "expat")
- (version "2.2.2")
 -(version "2.2.1")
 -(replacement expat-2.2.4)
++(version "2.2.4")
  (source (origin
   (method url-fetch)
   (uri (string-append "mirror://sourceforge/expat/expat/"
   version "/expat-" version ".tar.bz2"))
   (sha256
(base32
-"0ik0r39ala9c6hj4kxrk933klgwkzlkbrfhvhaykx8l1rwgr2xj3"
 -   "11c8jy1wvllvlk7xdc5cm8hdhg0hvs8j0aqy6s702an8wkdcls0q"
++   "17h1fb9zvqvf0sr78j211bngc6jpql5wzar8fg9b52jzjvdqbb83"
  (build-system gnu-build-system)
  (home-page "http://www.libexpat.org/";)
  (synopsis "Stream-oriented XML parser library written in C")

01/01: Merge branch 'master' into core-updates

2017-10-24 Thread Marius Bakke

mbakke pushed a commit to branch core-updates
in repository guix.

commit ca4fd41de892c7055ce140863382c332441b15d3
Merge: 7276eca 648c896
Author: Marius Bakke 
Date:   Tue Oct 24 22:00:23 2017 +0200

Merge branch 'master' into core-updates

 Makefile.am|1 +
 build-aux/build-self.scm   |1 +
 build-aux/compile-all.scm  |  125 +--
 doc/guix.texi  |  141 ++-
 gnu/local.mk   |5 +
 gnu/packages/animation.scm |   71 ++
 gnu/packages/audio.scm |   27 +-
 gnu/packages/backup.scm|   12 +-
 gnu/packages/base.scm  |   13 +
 gnu/packages/bioinformatics.scm|5 +-
 gnu/packages/compression.scm   |   22 +
 gnu/packages/curl.scm  |   14 +
 gnu/packages/databases.scm |8 +-
 gnu/packages/django.scm|3 +-
 gnu/packages/embedded.scm  |   65 ++
 gnu/packages/games.scm |3 +-
 gnu/packages/gnupg.scm |   40 +-
 gnu/packages/gnuzilla.scm  |   11 +-
 gnu/packages/graphviz.scm  |5 +-
 gnu/packages/haskell.scm   | 1114 +++-
 gnu/packages/icu4c.scm |   10 +
 gnu/packages/java.scm  |  211 
 gnu/packages/linux.scm |   12 +-
 gnu/packages/lxqt.scm  |   56 -
 gnu/packages/mail.scm  |2 +
 gnu/packages/music.scm |   38 +
 gnu/packages/networking.scm|   41 +
 .../patches/glibc-CVE-2017-15670-15671.patch   |   27 +
 gnu/packages/patches/icu4c-CVE-2017-14952.patch|   18 +
 gnu/packages/patches/mupdf-CVE-2017-14685.patch|   34 +
 gnu/packages/patches/mupdf-CVE-2017-14686.patch|   34 +
 gnu/packages/patches/mupdf-CVE-2017-14687.patch|  130 +++
 gnu/packages/pdf.scm   |7 +-
 gnu/packages/perl.scm  |  187 
 gnu/packages/python.scm|   17 +-
 gnu/packages/screen.scm|4 +-
 gnu/packages/syncthing.scm |   39 +-
 gnu/packages/version-control.scm   |6 +-
 gnu/packages/virtualization.scm|  102 +-
 gnu/packages/web.scm   |  611 +++
 gnu/packages/xml.scm   |  158 +++
 gnu/services.scm   |   37 +-
 gnu/services/base.scm  |   17 +
 guix/build-system/go.scm   |2 +
 guix/build/compile.scm |  165 +++
 guix/build/go-build-system.scm |   10 +-
 guix/build/pull.scm|  115 +-
 guix/discovery.scm |8 +-
 guix/gexp.scm  |   52 +
 guix/modules.scm   |   10 +
 50 files changed, 3500 insertions(+), 346 deletions(-)

diff --cc gnu/packages/curl.scm
index df2310b,2e4a48d..cad2d6f
--- a/gnu/packages/curl.scm
+++ b/gnu/packages/curl.scm
@@@ -43,7 -42,8 +43,8 @@@
  (define-public curl
(package
 (name "curl")
 -   (version "7.55.1")
 +   (version "7.56.0")
+(replacement curl-7.56.1)
 (source (origin
  (method url-fetch)
  (uri (string-append "https://curl.haxx.se/download/curl-";

01/01: Merge branch 'master' into core-updates

2017-08-20 Thread Marius Bakke

mbakke pushed a commit to branch core-updates
in repository guix.

commit 2718a9cd096d0f5ae4b23cc0814a42aee5cf3c4d
Merge: 9c4ce3a e904de7
Author: Marius Bakke 
Date:   Mon Aug 21 02:40:37 2017 +0200

Merge branch 'master' into core-updates

 HACKING|  10 +
 Makefile.am|   3 +-
 doc/guix.texi  |  95 ++-
 gnu/bootloader/grub.scm|  16 +-
 gnu/local.mk   |  12 +-
 gnu/packages/admin.scm |   4 +-
 gnu/packages/algebra.scm   |   4 +-
 gnu/packages/bioinformatics.scm| 195 -
 gnu/packages/ci.scm|  28 +-
 gnu/packages/compression.scm   |  13 +-
 gnu/packages/connman.scm   |   4 +-
 gnu/packages/cran.scm  | 782 -
 gnu/packages/crypto.scm|   4 +-
 gnu/packages/databases.scm |   5 +-
 gnu/packages/debug.scm |  27 +-
 gnu/packages/ebook.scm |  82 +++
 gnu/packages/emacs.scm |  32 +
 gnu/packages/fonts.scm |  27 +-
 gnu/packages/freeipmi.scm  |   4 +-
 gnu/packages/game-development.scm  |  85 +++
 gnu/packages/games.scm | 100 +++
 gnu/packages/gnome.scm |  96 ++-
 gnu/packages/gnunet.scm|   4 +-
 gnu/packages/gobby.scm |  85 ++-
 gnu/packages/graphics.scm  |  71 ++
 gnu/packages/ham-radio.scm |  52 ++
 gnu/packages/haskell.scm   | 304 +++-
 gnu/packages/image.scm |  71 ++
 gnu/packages/imagemagick.scm   |   6 +-
 gnu/packages/irc.scm   |   4 +-
 gnu/packages/java.scm  |  42 +-
 gnu/packages/kde-frameworks.scm| 311 
 gnu/packages/kde.scm   |   6 +-
 gnu/packages/libreoffice.scm   |   4 +-
 gnu/packages/linux.scm |  91 ++-
 gnu/packages/maths.scm |  11 +-
 gnu/packages/mpi.scm   |   2 +
 gnu/packages/music.scm |  59 +-
 gnu/packages/networking.scm|  38 +-
 gnu/packages/package-management.scm|   8 +-
 .../patches/bcftools-regidx-unsigned-char.patch|  16 +
 .../patches/graphicsmagick-CVE-2017-12935.patch|  28 +
 .../patches/graphicsmagick-CVE-2017-12936.patch|  16 +
 .../patches/graphicsmagick-CVE-2017-12937.patch|  28 +
 gnu/packages/patches/lz4-fix-test-failures.patch   | 136 
 .../patches/newsbeuter-CVE-2017-12904.patch|  34 +
 .../patches/python-cython-fix-tests-32bit.patch|  27 -
 .../python-pygit2-disable-network-tests.patch  |  79 +--
 gnu/packages/patches/rpm-CVE-2014-8118.patch   |  25 -
 gnu/packages/patches/vinagre-revert-1.patch|  56 ++
 gnu/packages/patches/vinagre-revert-2.patch| 448 
 .../xf86-video-siliconmotion-fix-ftbfs.patch   | 171 +
 gnu/packages/python.scm|  23 +-
 gnu/packages/rdesktop.scm  | 108 +--
 gnu/packages/ruby.scm  |   4 +-
 gnu/packages/shells.scm|   2 +-
 gnu/packages/statistics.scm|  17 +-
 gnu/packages/syndication.scm   |   2 +
 gnu/packages/tls.scm   |   8 +-
 gnu/packages/version-control.scm   |  52 +-
 gnu/packages/video.scm |   4 +-
 gnu/packages/vim.scm   |  40 +-
 gnu/packages/web.scm   |  85 ++-
 gnu/packages/wm.scm|   4 +-
 gnu/packages/xorg.scm  |   3 +-
 gnu/services/databases.scm |  17 +-
 gnu/services/web.scm   | 164 ++---
 gnu/system/examples/bare-bones.tmpl|   4 +-
 gnu/system/examples/desktop.tmpl   |   7 +-
 gnu/system/examples/lightweight-desktop.tmpl   |   7 +-
 gnu/tests/databases.scm|  10 +-
 guix/scripts/download.scm  |   5 +-
 guix/scripts/pack.scm  |  18 +-
 nix/libstore/build.cc  |   8 +-
 nix/libutil/util.cc|  15 -
 nix/libutil/util.hh|   6 -
 tests/guix-download.sh |   5 +-
 77 file

01/01: Merge branch 'master' into core-updates

2017-08-15 Thread Mark H. Weaver

mhw pushed a commit to branch core-updates
in repository guix.

commit 09ec5a0f0c40afde63975af9e9203884dad86ea7
Merge: 3785e42 2d430f2
Author: Mark H Weaver 
Date:   Tue Aug 15 03:10:14 2017 -0400

Merge branch 'master' into core-updates

 .mailmap   |  19 +--
 doc/guix.texi  |  56 -
 gnu/local.mk   |  10 ++
 gnu/packages/bioinformatics.scm| 106 +
 gnu/packages/code.scm  |  55 +
 gnu/packages/crypto.scm| 128 +++-
 gnu/packages/curl.scm  |   1 +
 gnu/packages/emacs.scm |  17 +++
 gnu/packages/enlightenment.scm |   6 +-
 gnu/packages/games.scm |  31 +++--
 gnu/packages/gcc.scm   |   6 +-
 gnu/packages/image-viewers.scm |   4 +-
 gnu/packages/imagemagick.scm   |   4 +-
 gnu/packages/ldc.scm   |   4 +-
 gnu/packages/libreoffice.scm   |  51 ++--
 gnu/packages/linux.scm |  17 +--
 gnu/packages/maths.scm |  53 +
 gnu/packages/moreutils.scm |  10 +-
 gnu/packages/music.scm |   7 +-
 gnu/packages/patches/catdoc-CVE-2017-0.patch   |  45 +++
 gnu/packages/patches/curl-bounds-check.patch   |  19 +++
 gnu/packages/patches/cvs-2017-12836.patch  |  45 +++
 .../patches/e2fsprogs-32bit-quota-warnings.patch   |  46 
 gnu/packages/patches/qemu-CVE-2017-10664.patch |  27 +
 gnu/packages/patches/qemu-CVE-2017-10806.patch |  38 ++
 gnu/packages/patches/qemu-CVE-2017-10911.patch | 106 +
 gnu/packages/patches/qemu-CVE-2017-11434.patch |  25 
 gnu/packages/perl.scm  | 130 -
 gnu/packages/python.scm|   4 +-
 gnu/packages/shells.scm|  69 +--
 gnu/packages/textutils.scm |   2 +
 gnu/packages/version-control.scm   |  22 ++--
 gnu/packages/video.scm |   4 +-
 gnu/packages/virtualization.scm|   7 +-
 gnu/packages/xdisorg.scm   |   8 ++
 gnu/services/audio.scm |  86 ++
 gnu/tests/audio.scm|  78 +
 37 files changed, 1220 insertions(+), 126 deletions(-)

diff --cc gnu/packages/perl.scm
index 4a87d0a,3265a55..2b2b2ea
--- a/gnu/packages/perl.scm
+++ b/gnu/packages/perl.scm
@@@ -1,7 -1,7 +1,7 @@@
  ;;; GNU Guix --- Functional package management for GNU
 -;;; Copyright © 2012, 2013, 2014, 2015, 2016 Ludovic Courtès 
 +;;; Copyright © 2012, 2013, 2014, 2015, 2016, 2017 Ludovic Courtès 

  ;;; Copyright © 2013 Andreas Enge 
- ;;; Copyright © 2015, 2016 Ricardo Wurmus 
+ ;;; Copyright © 2015, 2016, 2017 Ricardo Wurmus 
  ;;; Copyright © 2015, 2016 Eric Bavier 
  ;;; Copyright © 2015 Eric Dvorsak 
  ;;; Copyright © 2016 Mark H Weaver

01/01: Merge branch 'master' into core-updates

2017-08-11 Thread Mark H. Weaver

mhw pushed a commit to branch core-updates
in repository guix.

commit 3785e42e5219a86d9d8a5208ff18e97e0cbcbe78
Merge: d156c99 d373c16
Author: Mark H Weaver 
Date:   Fri Aug 11 03:49:24 2017 -0400

Merge branch 'master' into core-updates

 doc/guix.texi  |  25 ++-
 gnu/local.mk   |   2 -
 gnu/packages/check.scm |   4 +-
 gnu/packages/databases.scm |   4 +-
 gnu/packages/dav.scm   |   4 +-
 gnu/packages/emacs.scm | 106 +
 gnu/packages/gnome.scm |   4 +-
 gnu/packages/gstreamer.scm |  11 +-
 gnu/packages/image-viewers.scm |   4 +-
 gnu/packages/image.scm |   6 +-
 gnu/packages/imagemagick.scm   |   4 +-
 gnu/packages/logging.scm   |   5 +-
 .../openjpeg-CVE-2016-9572-CVE-2016-9573.patch | 233 
 .../openjpeg-CVE-2016-9850-CVE-2016-9851.patch | 245 -
 gnu/packages/python.scm|  23 ++
 gnu/packages/rails.scm |   4 +-
 gnu/packages/ruby.scm  | 192 
 gnu/packages/shells.scm|   4 +-
 gnu/packages/version-control.scm   |  23 +-
 gnu/services/admin.scm |  24 +-
 20 files changed, 316 insertions(+), 611 deletions(-)

1 2 >

1 - 100 of 160 matches

Mail list logo