[PATCH v2 4/6] gnu: Add python-reno.

* gnu/packages/openstack.scm (python-reno, python-reno2): New variables. --- gnu/packages/openstack.scm | 42 ++ 1 file changed, 42 insertions(+) diff --git a/gnu/packages/openstack.scm b/gnu/packages/openstack.scm index b3e3f08c2..0e50236af 100644 ---

[PATCH v2 5/6] gnu: python-mox3: Remove python-oslosphinx dependency (since the tests don't run anyway).

* gnu/packages/python.scm (python-mox3)[native-inputs]: Remove python-oslosphinx. --- gnu/packages/openstack.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/openstack.scm b/gnu/packages/openstack.scm index 0e50236af..277a443b0 100644 ---

[PATCH v2 0/6] Make python-oslosphinx work in python-tests branch.

Preparations to make python-oslosphinx work in python-tests branch. Danny Milosavljevic (6): gnu: python-testtools: Update to 1.4.0. gnu: Add python-fastimport. gnu: Add python-dulwich. gnu: Add python-reno. gnu: python-mox3: Remove native-input dependency (since the tests don't run

[PATCH v2 6/6] gnu: python-sphinx: Update to 1.5.1 and enable tests.

* gnu/packages/python.scm (python-sphinx): Update to 1.5.1. [arguments]: New field. [native-inputs]: Add graphviz, python-html5lib, python-mock, python-nose, python-requests. --- gnu/packages/python.scm | 20 1 file changed, 16 insertions(+), 4 deletions(-) diff --git

[PATCH v2 3/6] gnu: Add python-dulwich.

* gnu/packages/python.scm (python-dulwich, python2-dulwich): New variables. --- gnu/packages/python.scm | 44 1 file changed, 44 insertions(+) diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 6c7a6353d..b064c9f47 100644 ---

[PATCH v2 1/6] gnu: python-testtools: Update to 1.4.0.

* gnu/packages/python.scm (python-testtools): Update to 1.4.0. [source]: Use pypi-uri. [arguments]: New field. --- gnu/packages/python.scm | 29 - 1 file changed, 24 insertions(+), 5 deletions(-) diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index

[PATCH v2 2/6] gnu: Add python-fastimport.

* gnu/packages/python.scm (python-fastimport, python2-fastimport): New variables. --- gnu/packages/python.scm | 21 + 1 file changed, 21 insertions(+) diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index d53a10116..6c7a6353d 100644 ---

Re: ABI break!

On Tue, Jan 17, 2017 at 11:52:35PM +0100, Ludovic Court??s wrote: l...@gnu.org (Ludovic Court??s) skribis: > Pushed with tests as 384344198dcaa97847e66d3dd82f279ede08d690. And if you get a weird error when running ???make??? about ???file-system-needed-for-boot,

Re: [PATCH 0/8] Make python-oslosphinx work in python-tests branch.

Danny Milosavljevic writes: > Danny Milosavljevic (8): > gnu: python-oslosphinx: Update to 4.9.0. > gnu: Add python-reno. > gnu: python-requests: Update to 2.10.0. > gnu: Add python-dulwich. > gnu: Add python-geventhttpclient. > gnu: Add python-fastimport. >

Re: Help: a pypi source changed from targz into wheel

ng0 writes: > Marius Bakke writes: > >> ng0 writes: >> >>> I'm rebasing my kallithea branch at the moment and with the >>> release of the new "Routes" on pypi, the old one (which I need >>> for Kallithea) moved from a tar.gz to a wheel.

Re: Help: a pypi source changed from targz into wheel

Marius Bakke writes: > ng0 writes: > >> I'm rebasing my kallithea branch at the moment and with the >> release of the new "Routes" on pypi, the old one (which I need >> for Kallithea) moved from a tar.gz to a wheel. Do I simply >> download the wheel file

Re: [PATCH 0/8] Make python-oslosphinx work in python-tests branch.

On Wed, 18 Jan 2017 00:46:56 +0100 Danny Milosavljevic wrote: > Nevermind, fixed by updating to unittest2 1.1.0 (which has more dependencies, > though). Nope. Turns out that has the exact same problem. But I found the cause now and fixed it.

Re: [PATCH 4/6] gnu: Add rocksdb.

Ludovic Courtès writes: > Marius Bakke skribis: > >> * gnu/packages/databases.scm (rocksdb): New variable. > > [...] > >> + (lambda* (#:key (make-flags '()) #:allow-other-keys) >> + ;; Prevent the build from adding machine-specific >>

Re: [PATCH 0/8] Make python-oslosphinx work in python-tests branch.

Danny Milosavljevic writes: > On Wed, 18 Jan 2017 00:17:06 +0100 > Marius Bakke wrote: > >> Danny Milosavljevic writes: >> >> > Btw are you maybe working on unittest2 0.8.0 already? >> >> I was not finished with dulwich

Re: [PATCH 0/8] Make python-oslosphinx work in python-tests branch.

Nevermind, fixed by updating to unittest2 1.1.0 (which has more dependencies, though).

Re: [PATCH 2/8] gnu: Add python-reno.

Am 17.01.2017 um 23:25 schrieb Danny Milosavljevic: > +("python-pbr" ,python-pbr) AFAIK this is a "library that injects some useful and sensible default behaviors into your setuptools run." So I assume this should be a native import. If it is indeed needed as run-time, I suggest adding a

Re: [PATCH 8/8] gnu: python-dulwich: Fix tests.

Am 17.01.2017 um 23:25 schrieb Danny Milosavljevic: > + ;(substitute* "dulwich/hooks.py" > + ; (("f[.]write[(]args[[]0[]][)]") > "f.write(args[0].encode('utf-8'))")) This is an interesting but quite unusual way to escape the special characters. I suggest using the more

Re: [PATCH 0/8] Make python-oslosphinx work in python-tests branch.

On Wed, 18 Jan 2017 00:17:06 +0100 Marius Bakke wrote: > Danny Milosavljevic writes: > > > Btw are you maybe working on unittest2 0.8.0 already? > > I was not finished with dulwich yet, so no. What is it needed for? python-unittest2 ->

Re: [PATCH] gnu: python-click: Fix test failure.

Ludovic Courtès writes: > Danny Milosavljevic skribis: > >> Hi Ludo, >> >>> If you know more details, you’re welcome to add them in the comment, but >>> otherwise feel free to push! >> >> Does that mean push to master or to python-tests or to both? > > Good

Re: Hacker Public Radio (podcast) interview about Guix

Ludovic Courtès writes: > Hello Guix! > > Christopher Allan Webber skribis: > >> Hello! In late 2015 I was interviewed about Guix for Hacker Public >> Radio. Obviously, a lot has happened since then, but the ideas are >> still relevant. This is mainly aimed at people

Re: [PATCH 5/8] gnu: Add python-geventhttpclient.

Danny Milosavljevic writes: > LGTM! > > Let's just use yours here. It's also pretty independent... OK! Pushed this and the requests update. Looks like we have a ways to go still :-) signature.asc Description: PGP signature

Re: [PATCH 0/8] Make python-oslosphinx work in python-tests branch.

Danny Milosavljevic writes: > Btw are you maybe working on unittest2 0.8.0 already? I was not finished with dulwich yet, so no. What is it needed for? I was planning to do scipy next, but I'll gladly do something easier :-D signature.asc Description: PGP signature

Re: [PATCH 5/8] gnu: Add python-geventhttpclient.

LGTM! Let's just use yours here. It's also pretty independent...

Re: [PATCH 5/6] gnu: Add ceph.

Ludovic Courtès writes: >> + (substitute* "src/Makefile.in" >> + ;; By default, the PYTHONPATH is set to "src/pybind". >> + ;; Make sure our libraries are found too. >> + (("export PYTHONPATH=") (string-append "export

Re: [PATCH 3/8] gnu: python-requests: Update to 2.10.0.

On Tue, 17 Jan 2017 23:38:43 +0100 Marius Bakke wrote: > Danny Milosavljevic writes: > > > * gnu/packages/python.scm (python-requests): Update to 2.10.0. > > Since we're updating this package (and likely face some breakage), why > not go with the

Re: [PATCH 6/8] gnu: Add python-fastimport.

Danny Milosavljevic writes: > * gnu/packages/python.scm (python-fastimport, python2-fastimport): > New variables. > --- > gnu/packages/python.scm | 19 +++ > 1 file changed, 19 insertions(+) > > diff --git a/gnu/packages/python.scm

Re: [PATCH 8/8] gnu: python-dulwich: Fix tests.

Hi, On Tue, 17 Jan 2017 23:55:50 +0100 Marius Bakke wrote: > > + (setenv "TEST_RUNNER" "unittest") > > + (setenv "PYTHONHASHSEED" "random") > > + (and > > + ;; Test without c extensions > > + ;; FIXME someone

Re: [PATCH] gnu: Add mlmmj.

ng0 skribis: > From: ng0 > > * gnu/packages/mail.scm (mlmmj): New variable. Pushed, thanks! Ludo'.

Re: [PATCH 2/6] gnu: Add crypto++.

Leo Famulari writes: > On Sun, Jan 15, 2017 at 09:33:34PM +0100, Marius Bakke wrote: >> * gnu/packages/crypto.scm (crypto++): New variable. > > We should make sure to get this change as well: > https://github.com/weidai11/cryptopp/pull/347 Wow, good catch, will add it!

Re: [PATCH] gnu: Add guildhall.

Ricardo Wurmus skribis: > Ludovic Courtès writes: > >> Ricardo Wurmus skribis: >> >>> * gnu/packages/guile.scm (guildhall): New variable. >> >> [...] >> >>> + `(;; FIXME: tests fail for unknown reason. They seem to try to load >>> +

Re: [PATCH 0/8] Make python-oslosphinx work in python-tests branch.

Btw are you maybe working on unittest2 0.8.0 already?

Re: [PATCH 8/8] gnu: python-dulwich: Fix tests.

Danny Milosavljevic writes: > * gnu/packages/python.scm (python-dulwich)[arguments]: New field. > --- > gnu/packages/python.scm | 26 +- > 1 file changed, 25 insertions(+), 1 deletion(-) > > diff --git a/gnu/packages/python.scm

ABI break!

l...@gnu.org (Ludovic Courtès) skribis: > Pushed with tests as 384344198dcaa97847e66d3dd82f279ede08d690. And if you get a weird error when running ‘make’ about ‘file-system-needed-for-boot?’, just run: rm gnu/system.go && make This is because of an ABI break: ‘file-system-needed-for-boot?’

Re: [PATCH 7/8] gnu: python-oslosphinx: Add python-reno.

Danny Milosavljevic writes: > * gnu/packages/openstack.scm (python-oslosphinx)[native-inputs]: > Add python-reno. The commit title is weird (not the above quote). I think this commit can be squashed into the oslosphinx update, since it's a recent dependency.

Re: [PATCH] gnu: python-click: Fix test failure.

Danny Milosavljevic skribis: > Hi Ludo, > >> If you know more details, you’re welcome to add them in the comment, but >> otherwise feel free to push! > > Does that mean push to master or to python-tests or to both? Good question! That can go to master, but Marius and

Re: [PATCH 6/6] gnu: fio: Enable rbd support.

Marius Bakke skribis: > * gnu/packages/benchmark.scm (fio)[inputs]: Add ceph:lib. LGTM! Quite a lot of code for an “I/O tester”. ;-) Ludo’.

Re: [PATCH 5/8] gnu: Add python-geventhttpclient.

Danny Milosavljevic writes: > * gnu/packages/python.scm (python-geventhttpclient, python2-geventhttpclient): > New variables. > --- > gnu/packages/python.scm | 23 +++ > 1 file changed, 23 insertions(+) > > diff --git a/gnu/packages/python.scm

Re: [PATCH 5/6] gnu: Add ceph.

Marius Bakke skribis: > * gnu/packages/distributed-filesystems.scm: New file. > * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. [...] > + (substitute* "src/Makefile.in" > + ;; By default, the PYTHONPATH is set to "src/pybind". > + ;;

Re: [PATCH 0/8] Make python-oslosphinx work in python-tests branch.

Hi, On Tue, 17 Jan 2017 23:31:52 +0100 Marius Bakke wrote: > Danny Milosavljevic writes: > > > Danny Milosavljevic (8): > > gnu: python-oslosphinx: Update to 4.9.0. > > gnu: Add python-reno. > > gnu: python-requests: Update to 2.10.0. > >

Re: [PATCH 2/6] gnu: Add crypto++.

On Sun, Jan 15, 2017 at 09:33:34PM +0100, Marius Bakke wrote: > * gnu/packages/crypto.scm (crypto++): New variable. We should make sure to get this change as well: https://github.com/weidai11/cryptopp/pull/347

Re: [PATCH 4/8] gnu: Add python-dulwich.

Danny Milosavljevic writes: > * gnu/packages/python.scm (python-dulwich, python2-dulwich): New variables. > --- > gnu/packages/python.scm | 25 + > 1 file changed, 25 insertions(+) > > diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm

Re: [PATCH 4/6] gnu: Add rocksdb.

Marius Bakke skribis: > * gnu/packages/databases.scm (rocksdb): New variable. [...] > + (lambda* (#:key (make-flags '()) #:allow-other-keys) > + ;; Prevent the build from adding machine-specific optimizations. > + ;; This does not work if

Re: [PATCH 3/8] gnu: python-requests: Update to 2.10.0.

Danny Milosavljevic writes: > * gnu/packages/python.scm (python-requests): Update to 2.10.0. Since we're updating this package (and likely face some breakage), why not go with the latest version (2.12.4)? Patch attached! signature.asc Description: PGP signature >From

Re: [PATCH 2/6] gnu: Add crypto++.

Marius Bakke skribis: > * gnu/packages/crypto.scm (crypto++): New variable. LGTM! That was not an easy one either… > +(outputs '("out" ; 6.4M shared library and headers > + "bin" ; 6.3M cryptest.exe > + "doc"

Re: [PATCH 2/8] gnu: Add python-reno.

Danny Milosavljevic writes: > * gnu/packages/openstack.scm (python-reno, python2-reno): New variables. > --- > gnu/packages/openstack.scm | 25 + > 1 file changed, 25 insertions(+) > > diff --git a/gnu/packages/openstack.scm

Re: [PATCH 3/6] gnu: Add python-cram.

Marius Bakke skribis: > * gnu/packages/python.scm (python-cram, python2-cram): New variables. LGTM! > + (substitute* "cram/_test.py" > + ;; This hack works around a bug triggered by substituting > + ;; the /bin/sh paths.

Re: [PATCH 1/6] gnu: Add leveldb.

Marius Bakke skribis: > * gnu/packages/databases.scm (leveldb): New variable. LGTM!

Re: [PATCH 0/8] Make python-oslosphinx work in python-tests branch.

Danny Milosavljevic writes: > Danny Milosavljevic (8): > gnu: python-oslosphinx: Update to 4.9.0. > gnu: Add python-reno. > gnu: python-requests: Update to 2.10.0. > gnu: Add python-dulwich. > gnu: Add python-geventhttpclient. > gnu: Add python-fastimport. >

[PATCH 4/8] gnu: Add python-dulwich.

* gnu/packages/python.scm (python-dulwich, python2-dulwich): New variables. --- gnu/packages/python.scm | 25 + 1 file changed, 25 insertions(+) diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 9572f3a3c..deb801631 100644 --- a/gnu/packages/python.scm

[PATCH 8/8] gnu: python-dulwich: Fix tests.

* gnu/packages/python.scm (python-dulwich)[arguments]: New field. --- gnu/packages/python.scm | 26 +- 1 file changed, 25 insertions(+), 1 deletion(-) diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index cd0a47043..232e033c7 100644 ---

[PATCH 1/8] gnu: python-oslosphinx: Update to 4.9.0.

* gnu/packages/openstack.scm (python-oslosphinx): Update to 4.9.0. --- gnu/packages/openstack.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/openstack.scm b/gnu/packages/openstack.scm index b3e3f08c2..da5b5f7c8 100644 --- a/gnu/packages/openstack.scm +++

[PATCH 5/8] gnu: Add python-geventhttpclient.

* gnu/packages/python.scm (python-geventhttpclient, python2-geventhttpclient): New variables. --- gnu/packages/python.scm | 23 +++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index deb801631..8c81eae64 100644 ---

[PATCH 7/8] gnu: python-oslosphinx: Add python-reno.

* gnu/packages/openstack.scm (python-oslosphinx)[native-inputs]: Add python-reno. --- gnu/packages/openstack.scm | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/gnu/packages/openstack.scm b/gnu/packages/openstack.scm index 338d35d13..966146de8 100644 ---

[PATCH 3/8] gnu: python-requests: Update to 2.10.0.

* gnu/packages/python.scm (python-requests): Update to 2.10.0. --- gnu/packages/python.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 6518006aa..9572f3a3c 100644 --- a/gnu/packages/python.scm +++

[PATCH 6/8] gnu: Add python-fastimport.

* gnu/packages/python.scm (python-fastimport, python2-fastimport): New variables. --- gnu/packages/python.scm | 19 +++ 1 file changed, 19 insertions(+) diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 8c81eae64..cd0a47043 100644 ---

[PATCH 2/8] gnu: Add python-reno.

* gnu/packages/openstack.scm (python-reno, python2-reno): New variables. --- gnu/packages/openstack.scm | 25 + 1 file changed, 25 insertions(+) diff --git a/gnu/packages/openstack.scm b/gnu/packages/openstack.scm index da5b5f7c8..338d35d13 100644 ---

[PATCH 0/8] Make python-oslosphinx work in python-tests branch.

Danny Milosavljevic (8): gnu: python-oslosphinx: Update to 4.9.0. gnu: Add python-reno. gnu: python-requests: Update to 2.10.0. gnu: Add python-dulwich. gnu: Add python-geventhttpclient. gnu: Add python-fastimport. gnu: python-oslosphinx: Add python-reno. gnu: python-dulwich: Fix

Re: [PATCH] Add vcflib.

Ricardo Wurmus writes: > Roel Janssen writes: > >> From 98ed1adae91aca2c118779f5333dc21446f1c720 Mon Sep 17 00:00:00 2001 >> From: Roel Janssen >> Date: Tue, 26 Apr 2016 19:48:31 +0200 >> Subject: [PATCH] gnu: Add intervaltree. >> >> *

Re: [PATCH 1/1] gnu: icestorm: Replace reference in icebox_vlog.

On Mon, Jan 16, 2017 at 03:21:29PM +0100, Danny Milosavljevic wrote: > Hi, > > > I should have probably added a different phase for the > > "icebox/icebox_vlog.py" substitution, to make clear it's the only path > > which is a run-time reference. The installed icebox_vlog, can't find the > >

Re: [PATCH] gnu: Add r-fivethirtyeight.

Marius Bakke writes: > Ricardo Wurmus writes: > >> * gnu/packages/statistics.scm (r-fivethirtyeight): New variable. > > [...] > >> +(propagated-inputs >> + ;; broom,, scales, ggthemes > > Are these TODO entries or a shopping list? > > ...I'll

Re: [PATCH 02/16] gnu: Add hisat2.

Leo Famulari writes: > On Tue, Jan 17, 2017 at 03:11:27PM +0100, Ricardo Wurmus wrote: >> * gnu/packages/bioinformatics.scm (hisat2): New variable. > >> + #:make-flags (list "CC=gcc" "CXX=g++" "allall") > > "allall"... We can categorize this alongside -Weverything! ;)

Re: [PATCH 02/16] gnu: Add hisat2.

On Tue, Jan 17, 2017 at 03:11:27PM +0100, Ricardo Wurmus wrote: > * gnu/packages/bioinformatics.scm (hisat2): New variable. > + #:make-flags (list "CC=gcc" "CXX=g++" "allall") "allall"... We can categorize this alongside -Weverything! ;) > + (add-after 'unpack 'make-deterministic

Re: [PATCH] gnu: boost: Update to 1.63.0.

Hi Ludo, On Mon, 16 Jan 2017 14:45:15 +0100 l...@gnu.org (Ludovic Courtès) wrote: > Danny Milosavljevic skribis: > > > * gnu/packages/boost.scm (boost): Update to 1.63.0. > > I think this could go in a new ‘staging’ branch, unless we expect > breakage, in which case

Re: [PATCH] gnu: Add emacs-ag

Alex Kost writes: > Christopher Baines (2017-01-15 11:25 +) wrote: > >> * gnu/packages/emacs.scm (emacs-ag): New variable. >> --- >> gnu/packages/emacs.scm | 27 +++ >> 1 file changed, 27 insertions(+) >> >> diff --git a/gnu/packages/emacs.scm

Re: [PATCH] gnu: Add emacs-ag

ng0 writes: > Hartmut Goebel writes: > >> Am 15.01.2017 um 17:13 schrieb ng0: Am 15.01.2017 um 12:25 schrieb Christopher Baines: > the silver searcher Please explain shortly what this is in the description. >>> Why? In my

[PATCH] gnu: Add emacs-ag

* gnu/packages/emacs.scm (emacs-ag): New variable. --- gnu/packages/emacs.scm | 39 +++ 1 file changed, 39 insertions(+) diff --git a/gnu/packages/emacs.scm b/gnu/packages/emacs.scm index 50cea7685..45337097b 100644 --- a/gnu/packages/emacs.scm +++

[PATCH] gnu: Add emacs-ag

* gnu/packages/emacs.scm (emacs-ag): New variable. --- gnu/packages/emacs.scm | 38 ++ 1 file changed, 38 insertions(+) diff --git a/gnu/packages/emacs.scm b/gnu/packages/emacs.scm index 50cea7685..62b8dcc46 100644 --- a/gnu/packages/emacs.scm +++

Re: pre-push signature hook error reporting [was Re: [PATCH v6] gnu: python-sphinx: Update to 1.4.8.]

On Tue, Jan 17, 2017 at 01:56:29PM +0100, Hartmut Goebel wrote: > Am 17.01.2017 um 12:34 schrieb Danny Milosavljevic: > > For minimal improvement (I don't even think it's measureable), try > > `git rev-list HEAD` (backquotes) - it prevents having to spawn a > > subshell. > > Huh? I doubt this.

Re: [PATCH] gnu: python-click: Fix test failure.

Danny Milosavljevic writes: > Hi Ludo, > >> If you know more details, you’re welcome to add them in the comment, but >> otherwise feel free to push! > > Does that mean push to master or to python-tests or to both? > > Also, I don't really know more details other than that

Re: pre-push signature hook error reporting [was Re: [PATCH v6] gnu: python-sphinx: Update to 1.4.8.]

On Tue, Jan 17, 2017 at 03:55:42PM +0100, Hartmut Goebel wrote: > Am 17.01.2017 um 04:14 schrieb Leo Famulari: > > with `git verify-commit $(git rev-list HEAD)`. This is what the pre-push > > As far as I understand the example hook, it would be possible to do > something like > > git

Re: pre-push signature hook error reporting [was Re: [PATCH v6] gnu: python-sphinx: Update to 1.4.8.]

On Tue, Jan 17, 2017 at 12:34:28PM +0100, Danny Milosavljevic wrote: > Leo Famulari wrote: > > In Git 2.11.0, it seems that `git verify-commit` can't tell the user > > which commits failed verification: > > We should report that upstream and add the one line that does tell

Re: [PATCH] gnu: python-click: Fix test failure.

Hi Ludo, > If you know more details, you’re welcome to add them in the comment, but > otherwise feel free to push! Does that mean push to master or to python-tests or to both? Also, I don't really know more details other than that the test framework does autodiscovery and picks up a module for

Re: [PATCH 01/16] gnu: Add python-argparse.

Ricardo Wurmus (2017-01-17 16:26 +0100) wrote: > Hartmut Goebel writes: > >> Am 17.01.2017 um 15:11 schrieb Ricardo Wurmus: >>> * gnu/packages/python.scm (python-argparse, python2-argparse): New >> >> As of Python >= 2.7 and >= 3.2, the argparse module is maintained

Re: [PATCH 01/16] gnu: Add python-argparse.

Ricardo Wurmus (2017-01-17 15:11 +0100) wrote: [...] > +(define-public python-argparse > + (package > +(name "python-argparse") > +(version "1.4.0") > +(source > + (origin > + (method url-fetch) > + (uri (pypi-uri "argparse" version)) > + (sha256 > +

Re: Idea: "guix log"

Ludovic Courtès writes: > Hi! > > ng0 skribis: > >> Next tool, next idea (the guix log family): A log viewer. Gentoo >> has more than one. The way we currently save logs could be more >> human friendly. It doesn't need a restructuring of the folders >> (yes I

Re: [PATCH 01/16] gnu: Add python-argparse.

Am 17.01.2017 um 15:11 schrieb Ricardo Wurmus: > * gnu/packages/python.scm (python-argparse, python2-argparse): New As of Python >= 2.7 and >= 3.2, the argparse module is maintained within the Python standard library. Why do we need a this package? -- Regards Hartmut Goebel | Hartmut Goebel

[PATCH 15/16] gnu: Add r-msnbase.

* gnu/packages/bioinformatics.scm (r-msnbase): New variable. --- gnu/packages/bioinformatics.scm | 41 + 1 file changed, 41 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index bc7b0be1a..abe5c9294 100644 ---

[PATCH 08/16] gnu: Add r-protgenerics.

* gnu/packages/bioinformatics.scm (r-protgenerics): New variable. --- gnu/packages/bioinformatics.scm | 20 1 file changed, 20 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 74948ec55..4a1bd0196 100644 ---

[PATCH 16/16] gnu: Add r-msnid.

* gnu/packages/bioinformatics.scm (r-msnid): New variable. --- gnu/packages/bioinformatics.scm | 39 +++ 1 file changed, 39 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index abe5c9294..c60bedce4 100644 ---

[PATCH 14/16] gnu: Add r-pcamethods.

* gnu/packages/bioinformatics.scm (r-pcamethods): New variable. --- gnu/packages/bioinformatics.scm | 29 + 1 file changed, 29 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 4952bbe33..bc7b0be1a 100644 ---

[PATCH 12/16] gnu: Add r-vsn.

* gnu/packages/bioinformatics.scm (r-vsn): New variable. --- gnu/packages/bioinformatics.scm | 33 + 1 file changed, 33 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9e073843e..82a60dae0 100644 ---

[PATCH 11/16] gnu: Add r-affy.

* gnu/packages/bioinformatics.scm (r-affy): New variable. --- gnu/packages/bioinformatics.scm | 26 ++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 6cc808c6a..9e073843e 100644 ---

[PATCH 06/16] gnu: Add r-raremetals2.

* gnu/packages/bioinformatics.scm (r-raremetals2): New variable. --- gnu/packages/bioinformatics.scm | 31 +++ 1 file changed, 31 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 28a0da80e..743e8fdce 100644 ---

[PATCH 13/16] gnu: Add r-mzid.

* gnu/packages/bioinformatics.scm (r-mzid): New variable. --- gnu/packages/bioinformatics.scm | 30 ++ 1 file changed, 30 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 82a60dae0..4952bbe33 100644 ---

[PATCH 10/16] gnu: Add r-affyio.

* gnu/packages/bioinformatics.scm (r-affyio): New variable. --- gnu/packages/bioinformatics.scm | 24 1 file changed, 24 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 51660026e..6cc808c6a 100644 ---

[PATCH 04/16] gnu: Add r-compquadform.

* gnu/packages/statistics.scm (r-compquadform): New variable. --- gnu/packages/statistics.scm | 23 ++- 1 file changed, 22 insertions(+), 1 deletion(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index c00a3d954..41096e8a1 100644 ---

[PATCH 05/16] gnu: Add r-seqminer.

* gnu/packages/bioinformatics.scm (r-seqminer): New variable. --- gnu/packages/bioinformatics.scm | 22 ++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index cd64d3439..28a0da80e 100644 ---

[PATCH 03/16] gnu: Add ribodiff.

* gnu/packages/bioinformatics.scm (ribodiff): New variable. --- gnu/packages/bioinformatics.scm | 41 + 1 file changed, 41 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b3aedec63..cd64d3439 100644 ---

[PATCH 07/16] gnu: Add r-maldiquant.

* gnu/packages/bioinformatics.scm (r-maldiquant): New variable. --- gnu/packages/bioinformatics.scm | 26 ++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 743e8fdce..74948ec55 100644 ---

[PATCH 00/16] Bioinfo stuff

Hi Guix, this a series of patches to upstream a few package definitions from the staging module of the guix-bimsb repository. ~~ Ricardo Ricardo Wurmus (16): gnu: Add python-argparse. gnu: Add hisat2. gnu: Add ribodiff. gnu: Add r-compquadform. gnu: Add r-seqminer. gnu: Add

[PATCH 01/16] gnu: Add python-argparse.

* gnu/packages/python.scm (python-argparse, python2-argparse): New variables. --- gnu/packages/python.scm | 31 ++- 1 file changed, 30 insertions(+), 1 deletion(-) diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index a9792afe2..cf7143be1 100644 ---

Re: [PATCH] gnu: add proj4.

Björn Höfling writes: > Hi list, > > this im my first patch to Guix, so please tell me what you think. Hello Björn! Welcome to the list! Pretty impressive for a first patch :-) I've committed it with a few cosmetic improvements, described below. > *

Re: [PATCH] gnu: Add ldc-1.1.0-beta6

On Thu, Jan 12, 2017 at 5:09 PM, Ludovic Courtès wrote: > ... > The one last thing that’s missing as discussed at > is > the comment at the top of .patch files (description and upstream > status). > > Could you do

Re: pre-push signature hook error reporting [was Re: [PATCH v6] gnu: python-sphinx: Update to 1.4.8.]

Am 17.01.2017 um 12:34 schrieb Danny Milosavljevic: > For minimal improvement (I don't even think it's measureable), try `git > rev-list HEAD` (backquotes) - it prevents having to spawn a subshell. Huh? I doubt this. The bash manual, section "Command Substitution" does not distinguish between

Re: Help: a pypi source changed from targz into wheel

ng0 writes: > I'm rebasing my kallithea branch at the moment and with the > release of the new "Routes" on pypi, the old one (which I need > for Kallithea) moved from a tar.gz to a wheel. Do I simply > download the wheel file and calculate the hash on that one, and > fit the

Re: Installing guix packages without root permissions (in HPC environments)

Am 17.01.2017 um 10:15 schrieb Pjotr Prins: > But, I thought the easy way is to patch a path with something the has > the exact same size(!). This has the advantage that it will always > work. Trying this second strategy I wrote a new tool which replaces > the old path with a new one that takes

Re: Help: a pypi source changed from targz into wheel

Am 16.01.2017 um 23:27 schrieb ng0: > Do I simply > download the wheel file and calculate the hash on that one, and > fit the name appropriately into the pypi? AFAIK we treat wheels as a binary files. You need to ask the project to release source archives, I'm afraid, -- Regards Hartmut Goebel

Re:Re: About flashplayer

good idea, thank! 在 2017-01-17 19:51:24，"Alex Vong" 写道： tumashu writes: > Ok, thanks for the information! > If you just want to watch a video, there are plenty of free software out there for downloading videos like youtube-dl

Re: About flashplayer

tumashu writes: > Ok, thanks for the information! > If you just want to watch a video, there are plenty of free software out there for downloading videos like youtube-dl and you-get . In particular,

Re: pre-push signature hook error reporting [was Re: [PATCH v6] gnu: python-sphinx: Update to 1.4.8.]

Hi Leo, On Mon, 16 Jan 2017 22:14:14 -0500 Leo Famulari wrote: > In Git 2.11.0, it seems that `git verify-commit` can't tell the user > which commits failed verification: > > https://git.kernel.org/cgit/git/git.git/tree/builtin/verify-commit.c?h=v2.11.0 We should report

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