Ricardo Wurmus ricardo.wur...@mdc-berlin.de skribis:
Hi,
Ricardo Wurmus ricardo.wur...@mdc-berlin.de writes:
Ludovic Courtès l...@gnu.org writes:
Is there a better way to make sure that all (direct and transient)
runtime dependencies can be found through the PERL5LIB variable?
Good
Hi,
Ricardo Wurmus ricardo.wur...@mdc-berlin.de writes:
Ludovic Courtès l...@gnu.org writes:
Is there a better way to make sure that all (direct and transient)
runtime dependencies can be found through the PERL5LIB variable?
Good question. The #:inputs parameter of build phases contains
Ludovic Courtès l...@gnu.org writes:
Is there a better way to make sure that all (direct and transient)
runtime dependencies can be found through the PERL5LIB variable?
Good question. The #:inputs parameter of build phases contains all the
inputs (native, normal, and propagated) when not
On Tue, 21 Jul 2015 10:41:19 +0200
Ricardo Wurmus ricardo.wur...@mdc-berlin.de wrote:
+(define-public bioperl-minimal
+ (let* ((inputs `((perl-module-build ,perl-module-build)
+ (perl-data-stag ,perl-data-stag)
+ (perl-libwww ,perl-libwww)
+
Ricardo Wurmus ricardo.wur...@mdc-berlin.de skribis:
Ludovic Courtès l...@gnu.org writes:
[...]
There are two cases:
1. When using BioPerl as a library, users will also have Perl
installed, so ‘guix package’ will report the right value for
PERL5LIB. No problem here.
2.
Ludovic Courtès l...@gnu.org writes:
+(native-search-paths (list (search-path-specification
+(variable PERL5LIB)
+(files '(lib/perl5/site_perl)
Why is it needed? At first sight it looks wrong because PERL5LIB is
Ludovic Courtès l...@gnu.org writes:
Ricardo Wurmus ricardo.wur...@mdc-berlin.de skribis:
From e8cffdb9e7a2447657b3f700b2f0beb00ad0f98e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Wed, 3 Jun 2015 17:44:20 +0200
Subject: [PATCH] gnu: Add BioPerl.
*
Ricardo Wurmus ricardo.wur...@mdc-berlin.de skribis:
Ludovic Courtès l...@gnu.org writes:
Ricardo Wurmus ricardo.wur...@mdc-berlin.de skribis:
From e8cffdb9e7a2447657b3f700b2f0beb00ad0f98e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Wed, 3 Jun 2015
Ricardo Wurmus ricardo.wur...@mdc-berlin.de skribis:
From e8cffdb9e7a2447657b3f700b2f0beb00ad0f98e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Wed, 3 Jun 2015 17:44:20 +0200
Subject: [PATCH] gnu: Add BioPerl.
* gnu/packages/bioinformatics.scm
I would expect python-biopython - silly as it looks.
Pj.
Andreas Enge andr...@enge.fr skribis:
On Wed, Jun 03, 2015 at 05:53:14PM +0200, Ricardo Wurmus wrote:
+(name bioperl-minimal)
according to the naming standard, this should probably be called perl-bio,
in analogy with libwww-perl becomes perl-libwww.
(name python-biopython)
From e8cffdb9e7a2447657b3f700b2f0beb00ad0f98e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Wed, 3 Jun 2015 17:44:20 +0200
Subject: [PATCH] gnu: Add BioPerl.
* gnu/packages/bioinformatics.scm (bioperl-minimal): New variable.
---
gnu/packages/bioinformatics.scm
Hello,
On Wed, Jun 03, 2015 at 05:53:14PM +0200, Ricardo Wurmus wrote:
+(name bioperl-minimal)
according to the naming standard, this should probably be called perl-bio,
in analogy with libwww-perl becomes perl-libwww.
(name python-biopython)
Actually, then this should be
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