* gnu/packages/emacs.scm (geiser)[arguments]: Symlink Guile modules
to the right 'guilesitedir' in the 'post-install' phase.
---
gnu/packages/emacs.scm | 15 +++
1 file changed, 11 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/emacs.scm b/gnu/packages/emacs.scm
index
宋文武 (2015-06-21 16:21 +0300) wrote:
The previous patch was intend to fix a issue that manually spawned Guile
doesn't know the geiser module.
When discuss this issue in IRC with alezost, I suddenly notice that add
a simple '(require 'geiser-install)' to my init.el make it work.
Here is the
The previous patch was intend to fix a issue that manually spawned Guile
doesn't know the geiser module.
When discuss this issue in IRC with alezost, I suddenly notice that add
a simple '(require 'geiser-install)' to my init.el make it work.
Here is the new patch for '/etc/emacs/site-start.el'
FYI, I investigated the problem with gst-libav on x86_64, and it turns
out that it began when we updated nettle from 2.7 to 3.1, the latter of
which is configured with --enable-fat. For details, see my post on
bug-nettle:
http://lists.lysator.liu.se/pipermail/nettle-bugs/2015/003389.html
We
Ben Woodcroft b.woodcr...@uq.edu.au writes:
From d49710b5a87bfdbe3c1fd7f42f4fc67875e5 Mon Sep 17 00:00:00 2001
From: Ben Woodcroft donttrust...@gmail.com
Date: Sun, 21 Jun 2015 20:15:31 +1000
Subject: [PATCH] gnu: Add hmmer.
* gnu/packages/bioinformatics.scm (hmmer): New variable.
---
白い熊＠相撲道 (2015-06-21 12:36 +0300) wrote:
I've been using
(sudoers xxx...)
in my config.scm file a long time.
Now, for some time it's been warning me that using a string for file
“sudoers” is deprecated and to use “plain-file”.
So I've tried
(sudoers-file (plain-file /etc/sudoers xxx...))
On 2015-06-17 00:57, Mark H Weaver wrote:
Daniel Pimentel d...@openmailbox.org writes:
I tried create new packages (ipcalc, nmap, xfburn and others) but
without success.
My steps (based on talk GNU Guix packaging by Andreas Enge):
0. Git clone guix repository by savannah;
1. Copy
Ricardo Wurmus rek...@elephly.net skribis:
Ludovic Courtès l...@gnu.org writes:
[...]
+(native-search-paths
+ (list (search-path-specification
+(variable LV2_PATH)
+(files '(lib/lv2)
Shouldn’t it be in LV2 itself instead?
I don’t know. LV2_PATH is
On 2015-06-21 22:56, l...@gnu.org wrote:
Amirouche Boubekki amirou...@hypermove.net skribis:
If I'm not mistaken this patch relies only on the presence of
requirements.txt. This is not a required file in python
packaging. otherwise said, we miss a lot using this method. I think
the best way to
On Sun, Jun 21, 2015 at 01:17:31PM -0400, Mark H Weaver wrote:
It's not good that hmmer bundles its own copy of easel. If we ever need
easel for another package, we should find a way to build hmmer against
the external easel library. Having multiple copies of the same library
on the system
Ricardo Wurmus ricardo.wur...@mdc-berlin.de skribis:
Ludovic Courtès l...@gnu.org writes:
[...]
There are two cases:
1. When using BioPerl as a library, users will also have Perl
installed, so ‘guix package’ will report the right value for
PERL5LIB. No problem here.
2.
Ricardo Wurmus ricardo.wur...@mdc-berlin.de skribis:
You are right. Is the attached patch better?
From 37db5b51fe4a09496e149d59b64aa0b69ae42fd1 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Tue, 16 Jun 2015 11:33:26 +0200
Subject: [PATCH] gnu: Add idr.
Federico Beffa (2015-06-21 11:29 +0300) wrote:
[...]
+(define* (emacs-byte-compile-directory dir #:optional (dependency-dirs '()))
+ Byte compile all files in DIR and its sub-directories. Before compiling
+the files, add DIR and all directories in DEPENDENCY-DIRS to 'load-path'.
+ (let
Hi, I've tried this elpa importer and it is great!!
I don't have real comments on code, just some nitpicks.
Federico Beffa (2015-06-21 11:28 +0300) wrote:
From 8796b32a1ff8d565c3eb9874cde6a4a14d0b4f3b Mon Sep 17 00:00:00 2001
From: Federico Beffa be...@fbengineering.ch
Date: Tue, 16 Jun 2015
宋文武 iyzs...@gmail.com skribis:
Ludovic Courtès l...@gnu.org writes:
[...]
I'd like to try re-package qt5 with submodules, and drop QtWebEngine.
As same as Debian and NixOS did.
And Fedora. Ricardo found this insightful discussion:
With commit a8f996c, a new --map-file=foo.png option can be used to
create a PNG like the one below, thanks to Andy’s Guile-Charting. Maybe
not the optimal way to visualize this, but still quite useful IMO.
Comments welcome!
Ludo’.
Federico Beffa (2015-06-21 11:31 +0300) wrote:
[...]
diff --git a/doc/guix.texi b/doc/guix.texi
index 3ca105a..00fe5bb 100644
--- a/doc/guix.texi
+++ b/doc/guix.texi
@@ -2404,6 +2404,17 @@ Which Haskell compiler is used can be specified with
the @code{#:haskell}
parameter which defaults
Pjotr Prins pjotr.publi...@thebird.nl writes:
It is quite common in bioinformatics tools to include foreign code.
One reason in favour of including the original setup that is it is
THAT what the authors and others test and run. Bringing in our own
dependencies is bound to open a can of worms
Amirouche Boubekki amirou...@hypermove.net skribis:
If I'm not mistaken this patch relies only on the presence of
requirements.txt. This is not a required file in python
packaging. otherwise said, we miss a lot using this method. I think
the best way to do that would be to:
- download the
Federico Beffa be...@ieee.org skribis:
On Fri, Jun 19, 2015 at 2:13 PM, Ludovic Courtès l...@gnu.org wrote:
guix.el already takes care of that (info (guix) Emacs Initial Setup),
so that should be enough.
Unfortunately this doesn't work without modification. The reason is
that I follow the
Ben Woodcroft b.woodcr...@uq.edu.au writes:
On 21/06/15 14:41, Mark H Weaver wrote:
Is there any reason to build the single-threaded version? Maybe it
would be better to omit it, and call the multi-threaded version
FastTree. What do you think?
I considered this. I have only ever used the
Hi Guixers,
attached a patch to add an ELPA importer.
Fede
From 8796b32a1ff8d565c3eb9874cde6a4a14d0b4f3b Mon Sep 17 00:00:00 2001
From: Federico Beffa be...@fbengineering.ch
Date: Tue, 16 Jun 2015 10:50:06 +0200
Subject: [PATCH 1/5] import: Add 'elpa' importer.
* guix/import/elpa.scm: New file.
A new general utility for Emacs.
Fede
From d036941639ecffe8fb29dd9cc7ee9b5fe0e6b10c Mon Sep 17 00:00:00 2001
From: Federico Beffa be...@fbengineering.ch
Date: Tue, 16 Jun 2015 21:09:57 +0200
Subject: [PATCH 2/5] build: emacs-utils: Add 'emacs-byte-compile-directory'.
* guix/build/emacs-utils.scm
A new 'emacs-buld-system'.
Fede
From 9c090ddd7de011b369208cdeb28eb3eaa5dc6011 Mon Sep 17 00:00:00 2001
From: Federico Beffa be...@fbengineering.ch
Date: Sun, 21 Jun 2015 10:10:05 +0200
Subject: [PATCH 3/5] build: Add 'emacs-build-system'.
* Makefile.am (MODULES): Add
Fede
From c17c181a5663a29fdc84942c90d6b90549a9f76e Mon Sep 17 00:00:00 2001
From: Federico Beffa be...@fbengineering.ch
Date: Mon, 15 Jun 2015 14:51:06 +0200
Subject: [PATCH 4/5] gnu: Add emacs-auctex.
* gnu/packages/emacs.scm: New variable.
---
gnu/packages/emacs.scm | 24
Another patch attached, with the only difference being the brackets not
on a new line.
On 21/06/15 14:41, Mark H Weaver wrote:
Is there any reason to build the single-threaded version? Maybe it
would be better to omit it, and call the multi-threaded version
FastTree. What do you think?
I
One of my favourite pieces of software.
From 7afc66fcf58e75e3738edf31f3cf1da0c1fe4488 Mon Sep 17 00:00:00 2001
From: Ben Woodcroft donttrust...@gmail.com
Date: Sun, 21 Jun 2015 18:49:56 +1000
Subject: [PATCH] gnu: Add hmmer.
* gnu/packages/bioinformatics.scm (hmmer): New variable.
---
I've been using
(sudoers xxx...)
in my config.scm file a long time.
Now, for some time it's been warning me that using a string for file “sudoers”
is deprecated and to use “plain-file”.
So I've tried
(sudoers-file (plain-file /etc/sudoers xxx...))
but I'm told: “invalid character `/' in name
+(define-public hmmer
+ (package
+(name hmmer)
+(version 3.1b2)
+(source (origin
+ (method url-fetch)
+ (uri (string-append
+http://selab.janelia.org/software/hmmer3/3.1b2/hmmer-;
+ version .tar.gz))
This line is
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