/packages/bioinformatics.scm
new file mode 100644
index 000..4d27b12
--- /dev/null
+++ b/gnu/packages/bioinformatics.scm
@@ -0,0 +1,83 @@
+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2014 Ricardo Wurmus rek...@elephly.net
+;;;
+;;; This file is part of GNU Guix
replace “alignments” with “nucleotide sequence
alignments” or something to that effect?
I agree. See attached patch.
From c4cae6d77e00491cfd78fe03da8ab617bc1732f2 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Thu, 11 Dec 2014 15:48:22 +0100
Subject: [PATCH] gnu
rather than
= assignments. Augmenting patch-makefile-SHELL to handle definitions
as well would result in a cleaner package recipe.
Cheers,
rekado
From c8d71da303ff6b82a30db542d382cab57a00699e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Thu, 11 Dec 2014 17:37:16
the indentation, though. Should the
compared string really be aligned with the arguments of `(or' (as shown
above), or rather aligned with `(or', the argument to `(string=?' (as in
the attached patch)?
-- rekado
From c9846248c28f2c22660c156d4275326fe8afac80 Mon Sep 17 00:00:00 2001
From: Ricardo
5d1d383417992369e6fa3f81331e87471183ffc6 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Thu, 11 Dec 2014 17:37:16 +0100
Subject: [PATCH] gnu: Add bedtools
* gnu/packages/bioinformatics.scm (bedtools): New variable.
---
gnu/packages/bioinformatics.scm | 49
This series of patches adds recipes for the perl module Test::Deep and
its dependencies Test::Tester and Test::NoWarnings.
-- rekado
From a1804b7b91d41765b2b7b7916df452027d6d0482 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Tue, 16 Dec 2014 12:12:10 +0100
* gnu/packages/perl.scm (perl-clone): New variable.
---
gnu/packages/perl.scm | 21 +
1 file changed, 21 insertions(+)
diff --git a/gnu/packages/perl.scm b/gnu/packages/perl.scm
index 4135533..d15ce1a 100644
--- a/gnu/packages/perl.scm
+++ b/gnu/packages/perl.scm
@@ -74,6
Attached is a patch that adds a recipe for Test::Simple, testing
utilities for perl. The previous patches relate to (but do not depend
on) Test::Simple.
The description is little more than the synopsis, because I had to make
it up myself. Any comments on this patch (and the others in this
From 7c5d5847e935976ae522be4618bc985a8205fdf4 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Tue, 16 Dec 2014 16:16:09 +0100
Subject: [PATCH] gnu: Add Test::Simple.
* gnu/packages/perl.scm (perl-test-simple): New variable.
---
gnu/packages/perl.scm | 19
-devel/2014-12/msg00321.html][Test::Deep]]
- [[http://lists.gnu.org/archive/html/guix-devel/2014-12/msg00323.html][Clone]]
-- rekado
From 713bb1145ff901c4069f2fadb210d8eb842981da Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Tue, 16 Dec 2014 17:52:44 +0100
Subject
. Although you said it was applied I haven't yet seen it in
the git repository.
From 96f31057ba6bb17c1801f87d4bbae70dd3539576 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Tue, 16 Dec 2014 17:52:44 +0100
Subject: [PATCH] gnu: Add bowtie
* gnu/packages
* gnu/packages/compression.scm (fastjar): New variable.
---
gnu/packages/compression.scm | 20
1 file changed, 20 insertions(+)
diff --git a/gnu/packages/compression.scm b/gnu/packages/compression.scm
index 7c22300..b768326 100644
--- a/gnu/packages/compression.scm
+++
Ricardo Wurmus writes:
* gnu/packages/compression.scm (fastjar): New variable.
---
gnu/packages/compression.scm | 20
1 file changed, 20 insertions(+)
diff --git a/gnu/packages/compression.scm b/gnu/packages/compression.scm
index 7c22300..b768326 100644
--- a/gnu
* gnu/packages/python.scm (python-pysam, python2-pysam): New variables.
---
gnu/packages/python.scm | 38 ++
1 file changed, 38 insertions(+)
diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm
index f81ab69..24bec00 100644
---
Omar Radwan writes:
Is there like a manual or something that can help me?
There is:
https://www.gnu.org/software/guix/manual/guix.html
A manual in info format is also included in the download. You can read
it in Emacs or any other info reader.
advertisement; any suggestions on how to reword this, or can I just
delete the second paragraph?
Best,
Ricardo
From 3e5e1e49893c73f8b9a565edcae5388f548dd13a Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Mon, 26 Jan 2015 16:12:31 +0100
Subject: [PATCH] gnu: Add Threading
Ludovic Courtès writes:
From 56f43a9042853aca79f60808a51d328dfbe420a3 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Tue, 23 Dec 2014 12:31:50 +0100
Subject: [PATCH] gnu: Add GCJ
* gnu/packages/gcc.scm (gcj-4.8, ecj-bootstrap-4.8): New variable.
* gnu
Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Fri, 30 Jan 2015 16:57:13 +0100
Subject: [PATCH] gnu: Add Ant.
* gnu/packages/java.scm (ant-minimal): New variable.
---
gnu/packages/java.scm | 48
1 file changed, 48
Ricardo Wurmus writes:
this patch adds ant-minimal, a minimal configuration of Apache Ant. Ant
can be configured with lots of optional libraries, but since most of
these libraries are built with Ant, I think it makes sense to provide a
minimal version.
A couple more things
Daniel Pimentel writes:
In soon the Guix GSD will be in distrowatch too, I request it.
The Guix Guix System Distribution, eh? ;)
When using the abbreviation GSD for Guix System Distribution I
recommend prefixing it with GNU to avoid confusion.
~~ Ricardo
From adc52a74fb12943fd77c97bf75a2092e839f9024 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus rek...@elephly.net
Date: Wed, 28 Jan 2015 22:39:03 +0100
Subject: [PATCH] Add 'waf-build-system'.
* guix/build-system/waf.scm, guix/build/waf-build-system.scm: New files.
* Makefile.am (MODULES
Hi Guix,
I'm trying to set up offloading such that I can have a powerful build
host compile stuff for me when my workstation isn't strong enough. I
bumped into a couple of issues while doing this, prompting me to write
this email to discuss what might be changed to improve this.
* lsh required
Hi Guix,
attached is a patch to add a Python package for the ReadTheDocs.org
Sphinx theme.
~~ Ricardo
From c8ba1aa7680f5d75c34177442c39507a49e8b2ae Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Fri, 6 Feb 2015 11:34:00 +0100
Subject: [PATCH] gnu: Add Sphinx
by the same author depending on Seqan.
The documentation is 7.8MB and the includes are 3.6MB heavy, so I
decided to split the outputs.
From 63d3fe6a279489bb872708f30e1c74799e7702a5 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Fri, 6 Feb 2015 12:38:40 +0100
Subject
* to use Ant without problems ANT_HOME and JAVA_HOME really should be
set appropriately (ANT_HOME to $out of the ant-minimal package,
JAVA_HOME to $out of icedtea6). Should I suggest these two paths as
search paths by adding something like this to ant-minimal (for
ANT_HOME) and
Ludovic Courtès writes:
- serd
- sord
- sratom
I think these should go to rdf.scm, no?
Yes, I think that would be better.
- suil
Its ‘description’ is bit long, IMO.
Agreed. I'll shorten the description and post an updated patch set.
Thanks!
Thanks for taking the time for the
: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Wed, 7 Jan 2015 17:49:00 +0100
Subject: [PATCH 1/3] gnu: Add QPDF.
* gnu/packages/pdf.scm (qpdf): New variable.
LGTM.
Thanks, I applied this patch in master.
From d42e6a3233b7c5142d1c91d8c2b1c751b74bd444 Mon Sep 17 00:00:00 2001
From: Ricardo
Andreas Enge writes:
the package fails to build on i686:
http://hydra.gnu.org/build/247325
Could you maybe have a look?
Thanks for notifying me.
A recurring error is apparently related to embedded assembly
instructions:
~
...
bt2_idx.h: Assembler messages:
bt2_idx.h:489: Error:
where it actually becomes fun).
running it. For example, Ricardo Wurmus (1) recently added Ardour (2), a
popular Digital Audio Workstation. Ardour depends on JACK Audio
Connection Kit (3), as do many applications in the Linux Audio
ecosystem. Multimedia distros like Ubuntu Studio and KXStudio
:00 2001
From: Ricardo Wurmus rek...@elephly.net
Date: Fri, 30 Jan 2015 18:14:00 +0100
Subject: [PATCH 11/15] gnu: Add Vamp SDK.
* gnu/packages/audio.scm (vamp): New variable.
[...]
+(home-page http://vamp-plugins.org;)
+(synopsis Vamp audio plugin SDK)
What about “Modular
ant, because I don't provide another more
fully featured variant of Ant.
~~ Ricardo
From e0df59826ff9d33e114ac00132c63306b8f873c5 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Fri, 30 Jan 2015 16:57:13 +0100
Subject: [PATCH] gnu: Add Ant.
* gnu/packages/java.scm
.
We likely won't be able to see the effect of this fix on hydra because
numpy fails to build, which is an input to matplotlib, but at least
matplotlib can now be compiled locally.
~~ Ricardo
From 31f9b8800de32cdbd1fd3d2266f5fbb41548dccc Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur
Ricardo Wurmus writes:
The license isn't very clear. The Google Code website[1] lists the
license as GPLv3, but nowhere in the source is the license version
specified. PKG-INFO declares License :: GPL, whereas
./doc/COPYING contains the MIT license. It's all pretty messy, so I
contacted
Ludovic Courtès writes:
Ricardo Wurmus ricardo.wur...@mdc-berlin.de skribis:
I wrote the author an email to ask whether this can be fixed upstream
for other architectures than x86_64. Until then should I just declare
x86_64 as the only supported architecture?
Probably yes, with a comment
Luis Felipe López Acevedo writes:
I just updated the SLiM theme with the new GuixSD logo. The text-input
box remains in the same position, so no additional changes are needed.
See the attached image,
In addition to saying that the logo is pretty I have two comments:
- do we really want to
to fix this by adding a build phase before `check'.
Do you have any ideas how to fix the test suite?
The patch also includes the definition of a new mirror for the R package
repository CRAN.
~~ Ricardo
From d2839cb8b65049990964bdfd20c890db5a8e453b Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus
.
~~ Ricardo
From 4729906c5156a7aeec917cbe1408d08a47369d59 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus rek...@elephly.net
Date: Tue, 17 Feb 2015 09:45:16 +0100
Subject: [PATCH] gnu: jack: propagate input util-linux
* gnu/packages/audio.scm (jack-1): Move input util-linux to
`propagated-inputs
Andreas Enge writes:
On Thu, Feb 19, 2015 at 07:33:59PM +0100, Ricardo Wurmus wrote:
+(define-public timidity++
+ (package
+(name timidity++)
Back to names... I would call this timidity. The package guidelines only
state that underscores are replaced by -, but the general idea would
Andreas Enge writes:
On Thu, Feb 19, 2015 at 09:03:34PM +0100, Ricardo Wurmus wrote:
Is copying the license and the readme file a problem? In my teensy
store I count 382 readme files alone. It doesn't seem unusual to
include the readme.
I think it is not good style. And it can create
Ricardo Wurmus writes:
The author has told me that the license is GPLv3; the website will be
updated accordingly. I will change the license field as soon as the
change is publicly visible.
The license is now officially declared to be GPLv3:
http://rseqc.sourceforge.net/#license
Hi Guix,
my colleague was curious what would happen if he installed two packages
at the same time from different shell sessions.
He ran guix package -i openmpi in one shell and guix package -i
boost in the other. The boost installation apparently finished earlier
and was added to the profile.
Andreas Enge writes:
On Thu, Feb 19, 2015 at 11:29:47AM +0100, Ricardo Wurmus wrote:
+(license license:gpl3)))
From the text printed on the license page you give, it should be gpl3+.
Otherwise it looks good, pleas push!
You are of course right! Will push with that change.
2001
From: Ricardo Wurmus rek...@elephly.net
Date: Thu, 19 Feb 2015 16:56:39 +0100
Subject: [PATCH 1/2] gnu: Add Freepats.
* gnu/packages/audio.scm (freepats): New variable.
---
gnu/packages/audio.scm | 42 ++
1 file changed, 42 insertions(+)
diff --git
FYI: I'm currently packaging TiMidity++. We may still need to package a
basic soundfont.
~~ Ricardo
Andreas Enge writes:
I just replaced the debian java with the icedtea6 you packaged in my android
project, and it works well! Do you also plan to package ant?
That's great! I'm glad it actually works!
I already packaged ant-minimal with only the most basic features
enabled, as most
Andreas Enge writes:
Speaking of java, I have a file
gnu/packages/javac.in
which is under version control, and which is required to compile guix.
This is a template for a wrapper script around GCJ to convert
javac-style arguments to arguments GCJ can understand. It's needed to
compile
d6b6d8c52d71519385ca16e89f5140d2563041e8 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Fri, 20 Feb 2015 12:19:38 +0100
Subject: [PATCH] gnu: python-scipy: install UTF-8 locale.
* gnu/packages/python.scm (python-scipy): Install en_US.UTF-8 locale in
install-doc phase to avoid encoding error
okay?
~~ Ricardo
___
[1]: http://code.google.com/p/rseqc
From e99a3cdb587afcf874495519c4dcf380295bd6f1 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Wed, 18 Feb 2015 15:00:04 +0100
Subject: [PATCH] gnu: Add RSeQC.
* gnu/packages/bioinformatics.scm (rseqc
Mark H Weaver writes:
* You mentioned in another thread (subject Midi) that you hadn't
tested it, and then Andreas reported that it didn't work. We should
get it working before adding it.
It doesn't work out of the box because (just like timidity++) it needs
to be passed a configuration
From eb9c5e9a239a5001afec411296ea7e482444c405 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Wed, 18 Feb 2015 16:08:33 +0100
Subject: [PATCH] gnu: Add arpack-ng.
* gnu/packages/maths.scm (arpack-ng): New variable.
---
gnu/packages/maths.scm | 25
Mark H Weaver writes:
Downloads from gitorious do not appear to work (see bug #19840), so I
offer the tarball (one for both plugins) on my own server until this is
fixed.
I will fix bug #19840 soon, and would prefer that we wait for that.
Okay. This will also give me time to make a new
, Ardour, JACK2, and
related libraries.
~~ Ricardo
From adc52a74fb12943fd77c97bf75a2092e839f9024 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus rek...@elephly.net
Date: Wed, 28 Jan 2015 22:39:03 +0100
Subject: [PATCH] Add 'waf-build-system'.
* guix/build-system/waf.scm, guix/build/waf-build
’, no?
Of course! I just stopped thinking at some point, I suppose. (Or it's
a remnant from my initial attempts with IcedTea7 which expects tarballs
of particular names to exist.)
From 13490591fe7ad774e8ec95626113138d828366fb Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc
Since bowtie's Makefile explicitly checks that the system it is built on
is x86_64 building on MIPS and i686 should be disabled. (See bug#19708
for discussion.)
This is what the attached patch does.
~~ Ricardo
From 9789efe14b8cf00ebf6b39a63146483fbe220535 Mon Sep 17 00:00:00 2001
From: Ricardo
Ludovic Courtès writes:
I rewrote this to instead check the generated test logs in test/ for
lines starting with Error: or FAILED:. To disable tests I wrapped
it in an (or #t ...) as the argument #:tests? #f does not disable a
custom check phase.
'check
(lambda _
Ricardo Wurmus writes:
Since bowtie's Makefile explicitly checks that the system it is built on
is x86_64 building on MIPS and i686 should be disabled. (See bug#19708
for discussion.)
This is what the attached patch does.
Please disregard the above patch and consider the attached one
Hi Guix,
this patch series adds a couple of audio libraries to
gnu/packages/audio.scm. Some of them depend on the waf-build-system
introduced in an earlier, separate patch set.
The following packages are added:
- JACK2 (with dbus support)
- aubio
- liblo
- LV2
The latter three packages are
the
patches is clearer now that Ardour has also been packaged.
~~ Ricardo
From b60b5718c35db62d471df63168bc3da4c11bbc32 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus rek...@elephly.net
Date: Wed, 28 Jan 2015 22:39:03 +0100
Subject: [PATCH 01/15] Add 'waf-build-system'.
* guix/build-system/waf.scm, guix
100644
index 000..f57af69
--- /dev/null
+++ b/gnu/packages/audio.scm
@@ -0,0 +1,57 @@
+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2015 Ricardo Wurmus rek...@elephly.net
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can
(there is no official
upstream source for the wrapper script, so we might as well roll our
own).
Anyway, your comments are very welcome.
-- Ricardo
From 56f43a9042853aca79f60808a51d328dfbe420a3 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Tue, 23 Dec 2014 12:31:50
8acd14a15924cf23a0a4ba7582d66c26b2245799 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Mon, 26 Jan 2015 16:12:31 +0100
Subject: [PATCH] gnu: Add Threading Building Blocks.
* gnu/packages/tbb.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
---
gnu-system.am
Andreas Enge writes:
On Mon, Jan 26, 2015 at 10:25:06AM +0100, Ricardo Wurmus wrote:
+(define-public jack1
+ (package
+(name jack)
+(version 0.124.1)
Is the 1 in jack1 above a typo?
It is not. There are two editions available:
JACK1 (currently at version 0.124.1) and JACK2
to build OpenJDK.
Best,
Ricardo
From 90ce3c9a1b1a7f3ba034b7e69aef910252470d72 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Mon, 5 Jan 2015 13:56:51 +0100
Subject: [PATCH] gnu: Add CUPS.
* gnu/packages/cups.scm: New file
* gnu-system.am (GNU_SYSTEM_MODULES): Add
Thompson, David writes:
On Mon, Jan 5, 2015 at 8:04 AM, Ricardo Wurmus
ricardo.wur...@mdc-berlin.de wrote:
I'm also not sure if creating two outputs out and include is
correct. To build OpenJDK with IcedTea I need to have both the library
output and the include files and after splitting
Ludovic Courtès writes:
Ricardo Wurmus ricardo.wur...@mdc-berlin.de skribis:
There are a couple of problems with this package, one of which is that
the test suite is failing for some reason. I have not been able to
figure out why the cupsFileFind test fails, so I disabled the tests.
OK
This patch series
- fixes the home page URL for openjpeg
- adds openjpeg 1.5 (inheriting from openjpeg 2)
- updates poppler to build with openjpeg 1.5 and lcms
- updates openjpeg 2.0.0 to 2.0.1
All looks good to me!
Please make sure to add a copyright line for you in these two files.
though I have been trying
for a long time.
I have addressed your previous comments about outputs and the CUPS
license (gpl2 instead of gpl2+).
Thanks in advance for your review!
-- Ricardo
From 8e671fdd888bf9548bf52acf8789500c90d4b072 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur
to the
long list.
+(license license:gpl3)))
GPLv3-only?
You were right: it's GPLv3+. My apologies.
From 5696a8227d98d60d38f0ff19b40a21ccb13e53f1 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Mon, 9 Feb 2015 12:13:26 +0100
Subject: [PATCH] gnu: Add HISAT.
* gnu
Ludovic Courtès writes:
+(license license:gpl3)))
GPLv3-only?
Actually, searching the source tree shows me that LICENSE includes the
or (at your option) any later version phrase; but the included copy of
htslib that is built as part of the STAR aligner is MIT licensed.
I'll update the
Ricardo Wurmus writes:
The test suite fails when using `guix build' but it's passing when run
in `guix environment --pure r' (where LANG is en_GB.UTF-8). Judging
from the error message I suspect that the failure is locale-related, but
I was not able to fix this by adding a build phase
:00:00 2001
From: Ricardo Wurmus rek...@elephly.net
Date: Thu, 5 Feb 2015 22:40:06 +0100
Subject: [PATCH] gnu: Add LV2.
* gnu/packages/audio.scm (lv2): New variable.
---
gnu/packages/audio.scm | 30 ++
1 file changed, 30 insertions(+)
diff --git a/gnu/packages
. Attached are updated patches for
these five packages.
~~ Ricardo
From a17b861614f20d98e240c975d58d00470c912830 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus rek...@elephly.net
Date: Tue, 10 Feb 2015 10:07:57 +0100
Subject: [PATCH 1/5] gnu: Add serd.
* gnu/packages/rdf.scm (serd): New variable.
---
gnu
Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Mon, 9 Feb 2015 15:38:30 +0100
Subject: [PATCH] gnu: Add STAR.
* gnu/packages/bioinformatics.scm (star): New variable.
---
gnu/packages/bioinformatics.scm | 48 +
1 file changed
00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Fri, 30 Jan 2015 16:57:13 +0100
Subject: [PATCH] gnu: Add Ant.
* gnu/packages/java.scm (ant-minimal): New variable.
---
gnu/packages/java.scm | 49 +
1 file changed, 49 insertions
Attached is a patch to add lash, an audio application session handler.
~~ Ricardo
From 19edc131b719981a9545867bf167daa642551a08 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus rek...@elephly.net
Date: Fri, 13 Feb 2015 23:20:00 +0100
Subject: [PATCH] gnu: Add lash.
* gnu/packages/audio.scm (lash
9bc97be6d04e02c1474e3a257de2062055260401 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus rek...@elephly.net
Date: Wed, 11 Feb 2015 23:30:50 +0100
Subject: [PATCH 1/2] gnu: Add LV2 mda Piano plugin.
* gnu/packages/audio.scm (lv2-mdapiano): New variable.
---
gnu/packages/audio.scm | 35 +++
1
David Thompson writes:
+ (uri (string-append
+ mirror://savannah/lash/lash-
+ (string-map (lambda (x) (if (char=? x #\-) #\~ x))
version)
How about splitting the string on #\- and then joining on #\~ instead?
Yeah, that would probably look
Andreas Enge writes:
another message for Ricardo or anyone else interested in sound:
Have we already got an application to play midi files on guix?
I used to use timidity (with an appropriate rather large soundfont),
but maybe there are better choices nowadays?
I know of no alternatives to
discovered that I don't
actually have any use for it yet (even building IcedTea was only
motivated by my desire to build R), so I didn't mind to take a break
from anything Java-related :)
On Mon, Feb 09, 2015 at 03:51:40PM +0100, Ricardo Wurmus wrote:
+(define-public ant-minimal
If I understood
From: Ricardo Wurmus rek...@elephly.net
Date: Sun, 15 Feb 2015 20:53:26 +0100
Subject: [PATCH] gnu: Add AZR-3.
* gnu/packages/audio.scm (azr3): New variable.
---
gnu/packages/audio.scm | 37 +
1 file changed, 37 insertions(+)
diff --git a/gnu/packages/audio.scm b
I forgot to send along the patch that adds ganv, the GTK widget used
by patchage.
~~ Ricardo
From 348f70829543f13677c2b63f8e0d3bb6fc39f922 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus rek...@elephly.net
Date: Sun, 15 Feb 2015 21:45:54 +0100
Subject: [PATCH] gnu: Add ganv.
* gnu/packages
From d1ee03729c640bd6727bb13f61fa2729b6eef93b Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus rek...@elephly.net
Date: Sun, 15 Feb 2015 21:43:01 +0100
Subject: [PATCH] gnu: Add patchage.
* gnu/packages/audio.scm (patchage): New variable.
---
gnu/packages/audio.scm | 34
From e253f67cd387dbad5629e53d113a717b41ca96af Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus rek...@elephly.net
Date: Fri, 20 Feb 2015 22:05:37 +0100
Subject: [PATCH] gnu: Add jalv.
* gnu/packages/audio.scm (jalv): New variable.
---
gnu/packages/audio.scm | 31 +++
1
00:00:00 2001
From: Ricardo Wurmus rek...@elephly.net
Date: Fri, 20 Feb 2015 21:56:51 +0100
Subject: [PATCH] gnu: lilv: propagate inputs serd, sord and sratom.
* gnu/packages/audio.scm (lilv): move serd, sord and sratom to propagated
inputs.
---
gnu/packages/audio.scm | 8 +---
1 file
From 7bc01b9d3c03bf0ae4f44eddcbc6c50590ea42fb Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Tue, 10 Mar 2015 11:32:48 +0100
Subject: [PATCH] gnu: Add SuiteSparse.
* gnu/packages/maths.scm (suitesparse): New variable.
---
gnu/packages/maths.scm | 54
From 578e105ea3beec8c7b2edde9135d4ac272440c4b Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Wed, 18 Mar 2015 14:08:20 +0100
Subject: [PATCH] gnu: Add python-h5py and python2-h5py.
* gnu/packages/python.scm (python-h5py, python2-h5py): New variables.
---
gnu
From 083573c250162b9b12173e13e66c04f6c32568fb Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Wed, 18 Mar 2015 17:59:20 +0100
Subject: [PATCH] gnu: Add Shogun.
* gnu/packages/bioinformatics.scm (shogun): New variable.
---
gnu/packages/bioinformatics.scm | 92
okay?
Should this be applied to core updates instead of master?
~~ Ricardo
From a71d408351e54031a1bb0ecb143128a5512fc75e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus rek...@elephly.net
Date: Sun, 15 Mar 2015 23:12:32 +0100
Subject: [PATCH] gnu: gtk+-2: build gobject introspection typelib file
to coming up with
appropriate commit messages for these changes, so I'd appreciate
suggestions to improve them.
~~ Ricardo
From 3bc3dd46ebec97acf424bbc8b3026ee23fdafa19 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Tue, 10 Mar 2015 13:56:55 +0100
Subject: [PATCH 1/5
Eric Bavier writes:
On 2015-03-18 05:09, Ricardo Wurmus wrote:
+ (alist-cons-before
+'install 'prepare-out
+(lambda _
+ (mkdir-p (string-append (assoc-ref %outputs out) /lib))
+ (mkdir-p (string-append (assoc-ref %outputs out)
/include)))
Could
Ludovic Courtès writes:
Eric Bavier ericbav...@openmailbox.org skribis:
On 2015-03-17 06:32, Ricardo Wurmus wrote:
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Tue, 17 Mar 2015 12:24:45 +0100
Subject: [PATCH] gnu: Add openblas.
* gnu/packages/maths.scm (openblas): New variable
From b50b37a9abcf049b310b613eed29a121b7b8b3b9 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Fri, 20 Mar 2015 12:36:18 +0100
Subject: [PATCH] gnu: Add perl-uri.
* gnu/packages/perl.scm (perl-uri): New variable.
---
gnu/packages/perl.scm | 22
From bd84fbfa95fc06c8580e033ac0986157efcd8c49 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Fri, 20 Mar 2015 12:39:50 +0100
Subject: [PATCH] gnu: Add python2-pbcore.
* gnu/packages/bioinformatics.scm (python2-pbcore): New variable.
---
gnu/packages
dfe39329d60b38b684141cc0ce1d2bccd7ab637e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Fri, 20 Mar 2015 12:11:35 +0100
Subject: [PATCH 1/2] gnu: Add double-conversion.
* gnu/packages/maths.scm (double-conversion): New variable.
---
gnu/packages/maths.scm | 26
Eric Bavier writes:
On 2015-03-20 06:37, Ricardo Wurmus wrote:
* gnu/packages/perl.scm (perl-uri): New variable.
This package has existed in the (gnu packages web) module for some time
now. I just recently updated the version to 1.67 as well.
Ouch! Thanks for pointing me to this module
://lists.gnu.org/archive/html/guix-devel/2015-03/msg00573.html
- python2-h5py:
http://lists.gnu.org/archive/html/guix-devel/2015-03/msg00532.html
- python2-bx-python:
attached
~~ Ricardo
From 39f77a513b2505d2a9658f6f9ed40f24a6b93dfd Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur
From 18a14112b6e22248638d2b34e1c1b935e1bcd343 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Fri, 20 Mar 2015 16:17:55 +0100
Subject: [PATCH] gnu: Add cutadapt.
* gnu/packages/bioinformatics.scm (cutadapt): New variable.
---
gnu/packages/bioinformatics.scm | 40
Hi Guix,
Attached is a patch to add vcftools. The license of vcftools is
declared as LGPLv3.0 here[1] and in the README.
~~ Ricardo
From 2f1b826719dbda30bfa63afbb7fd6457981258b3 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Fri, 20 Mar 2015 16:50:33 +0100
Andreas Enge writes:
On Fri, Mar 20, 2015 at 10:57:07PM +0100, Ricardo Wurmus wrote:
Could someone please ask Hydra to build the packages?
Done.
Thank you! (Right now hydra seems not to respond, though.)
Ludovic Courtès writes:
From 9c9ef4fde4003a3bc9af73462552edde5d46c909 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus ricardo.wur...@mdc-berlin.de
Date: Tue, 10 Mar 2015 14:05:48 +0100
Subject: [PATCH 3/5] gnu: icedtea6: patch patches in separate build phase.
* gnu/packages/java.scm
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