Re: [rb-general] Paper preprint: Reproducible genomics analysis pipelines with GNU Guix

2018-05-13 Thread Catonano
2018-05-13 7:07 GMT+02:00 Ricardo Wurmus : > > Catonano writes: > > > Ricardo, I don't understand the problem you're raising here (I didn't > read > > the article yet, though) > > > > Would you mind to elaborate on that ? > > > > Why would you want to

Re: [rb-general] Paper preprint: Reproducible genomics analysis pipelines with GNU Guix

2018-05-13 Thread Ricardo Wurmus
Catonano writes: > Ricardo, I don't understand the problem you're raising here (I didn't read > the article yet, though) > > Would you mind to elaborate on that ? > > Why would you want to record the environment ? I want to record the detected build environment so that I

Re: [rb-general] Paper preprint: Reproducible genomics analysis pipelines with GNU Guix

2018-05-11 Thread Catonano
2018-05-11 10:19 GMT+02:00 Ricardo Wurmus : > > Ludovic Courtès writes: > > > Perhaps we could add to Autoconf-Archive (if it doesn’t have such things > > already) macros to deal with the R and Python stuff you had to deal > > with? And then publish

Re: [rb-general] Paper preprint: Reproducible genomics analysis pipelines with GNU Guix

2018-05-11 Thread Ricardo Wurmus
Ludovic Courtès writes: > Perhaps we could add to Autoconf-Archive (if it doesn’t have such things > already) macros to deal with the R and Python stuff you had to deal > with? And then publish a simple template that people could use as a > starting point. I

Re: [rb-general] Paper preprint: Reproducible genomics analysis pipelines with GNU Guix

2018-05-11 Thread Ludovic Courtès
Hello! Ricardo Wurmus skribis: > Ludovic Courtès writes: [...] >> Given the intended audience, I wonder how we could provide a simpler >> path to achieve the same goal. It could be a set of Autoconf macros >> leading to high-level ‘configure.ac’

Re: [rb-general] Paper preprint: Reproducible genomics analysis pipelines with GNU Guix

2018-04-23 Thread Ludovic Courtès
Hello Ricardo & all! Ricardo Wurmus skribis: > I’m happy to announce that the group I’m working with has released a > preprint of a paper on reproducibility with the title: > > Reproducible genomics analysis pipelines with GNU Guix >

Re: [rb-general] Paper preprint: Reproducible genomics analysis pipelines with GNU Guix

2018-04-11 Thread Holger Levsen
hi again, and extra kudos and thanks for releasing this under a free licence! \o/ -- cheers, Holger signature.asc Description: PGP signature

Re: [rb-general] Paper preprint: Reproducible genomics analysis pipelines with GNU Guix

2018-04-11 Thread Holger Levsen
On Wed, Apr 11, 2018 at 08:40:47PM +0200, Ricardo Wurmus wrote: > > just one thing/question: in the keywords you have "reproducible > Heh, it used to be “reproducible builds”, but the term was deemed too > abstract for the audience of biologists, so it was decided to change it > to “reproducible

Re: [rb-general] Paper preprint: Reproducible genomics analysis pipelines with GNU Guix

2018-04-11 Thread Holger Levsen
Hi Ricardo, On Wed, Apr 11, 2018 at 02:18:38PM +0200, Ricardo Wurmus wrote: > I’m happy to announce that the group I’m working with has released a > preprint of a paper on reproducibility with the title: > > Reproducible genomics analysis pipelines with GNU Guix >

Re: [rb-general] Paper preprint: Reproducible genomics analysis pipelines with GNU Guix

2018-04-11 Thread Ricardo Wurmus
Hi Holger, thanks for your comments! > just one thing/question: in the keywords you have "reproducible > software" but not "reproducible builds", which is kind of our "marketing > term". Do you think you could squeeze that in? Heh, it used to be “reproducible builds”, but the term was deemed