Re: [HCP-Users] Q3 rfMRI

2013-12-16 Thread basile pinsard
ok this is great if it is going to be fixed for the next release. many thanks. basile On Mon, Dec 16, 2013 at 8:16 PM, Timothy Coalson wrote: > Sorry I didn't notice your comment about reverse engineering cifti, it is > intended to be an open format, we do have documentation here: > > http://www

Re: [HCP-Users] Q3 rfMRI

2013-12-16 Thread Timothy Coalson
Sorry I didn't notice your comment about reverse engineering cifti, it is intended to be an open format, we do have documentation here: http://www.nitrc.org/projects/cifti/ In particular, http://www.nitrc.org/plugins/mwiki/index.php/cifti:ConnectivityMatrixFileFormatsdetails how things work in ci

Re: [HCP-Users] EPI distortion correction and slice-timing correction for fMRI data

2013-12-16 Thread Martin Luessi
Hi Jenn, Thank you very much for pointing me to the wiki. So far I haven't used STC but I may add it in the future to see if it makes a difference. Best, Martin On 12/13/13 16:21, Jennifer Elam wrote: > Hi Martin, > > > > We have gathered information and fMRI slice timing order for an exem

Re: [HCP-Users] Q3 rfMRI

2013-12-16 Thread basile pinsard
Hi again, it really seems to be a matter of C/Fortran order storage issue, reopening the timeseries data in C order seems to give me the right data. In [120]: data = np.memmap(nii.get_filename(), nii.get_data_dtype(), shape=nii.shape[4:],