Re: [HCP-Users] gifti labels to volume

2014-06-04 Thread Timothy Coalson
Workbench currently doesn't have a way to do that. caret5 has a way to do this (caret_command -surface-to-volume, and there is another method called multi-fiducial mapping, though I'm not sure how to invoke it), though you may need to do some file conversion. On a side note, FSL's probtrackx

Re: [HCP-Users] Brain Connectivity Matrices

2014-06-04 Thread Timothy Coalson
I believe we don't include those in the releases, because dense connectome files are very large (~30GB each). You should be able to generate them by running wb_command -cifti-correlate on a subject's rfMRI dtseries file. Tim On Tue, Jun 3, 2014 at 5:55 PM, Ommen, Jurgen omme0...@stthomas.edu

Re: [HCP-Users] gifti labels to volume

2014-06-04 Thread Donna Dierker
As far as I know, caret5's multi-fiducial mapping is volume-surface rahter than surface-volume. The caret_command method works, but you'll need to convert HCP surf.gii - caret5 coord/topo (caret_command -file-convert -sc …). And your label.gii or func.gii will need to be converted, too