Dear Users,
I am generating ROIs in subject volume space and need to know how to create a
gifti label file when I map from volume to surface and how to convert that
label gifti file to cifti roi?
Best wishes always,
Leah
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Marta Moreno-Ortega, Ph.D.
Postdoctoral Research Fellow
Hi Marta,
You will probably end up using wb_command to do what you need to do.
There are a bunch of tools that might be able to help. The usage is huge,
so do something like this to write it to a text file:
wb_command -all-commands-help ~/Desktop/wb_command.help.txt
Then open
You can always get help for an individual command by running it without any
arguments, and you can list the commands and only a short description with
-list-commands. You can also browse the commands here:
http://www.humanconnectome.org/software/workbench-command.php
In this case, you will want
Also, a low resolution T2w image is problematic (minimum tested is 1mm
isotropic and we know some things don’t work well when it gets worse than
1mm though that is probably not the source of the current issue).
can you elaborate on what things may not work well? this is a different
topic
