Re: [HCP-Users] using surfaces as termination masks

Inline comment. Tim On Thu, Apr 12, 2018 at 11:01 PM, Xinyang Liu wrote: > > 2. How to look at the CIFTI and GIFTI files as matrices? I haven't found a > proper way to look at the information inside as rows and columns. > Gifti files, and dense cifti files, have too

Re: [HCP-Users] using surfaces as termination masks

1. That is the ROI of neocortex (excluding the medial wall). The medial wall is the non-cortical tissue that connects the two hemispheres (e.g. corpus callosum, diencephalon). All of the surface meshes are usable if they are the same kind of mesh (i.e. native, 32k, 164k). 2. You can

Re: [HCP-Users] HCP Young Adult Genetics Data Released on dbGaP!!

I hear ya...preaching to the choir. I’ve just noticed a crusade (mainly led by geneticists). I’ve even seen folks put money on the table (Dorothy Bishop in the UK) for registered replication studies (irrespective of whether they replicate or not)! I just wanted to make sure I wasn’t missing

Re: [HCP-Users] HCP Young Adult Genetics Data Released on dbGaP!!

Hi Jenifer, There isn't a place to register hypotheses on dbGaP that I'm aware. People have asked for this for HCP and other shared/open datasets generally, but it would be difficult/impossible to scientifically police investigator's claims on a hypothesis (who would have the authority to

Re: [HCP-Users] HCP Young Adult Genetics Data Released on dbGaP!!

Hi Jenn, Thanks so much for the info. Do folks register their hypotheses somehow in the dbGaP (transparency and reliability measures percolating throughout the research community...particularly genetics). Cheers, JJ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ Jenifer Juranek, PhD Director of the BRAIN

Re: [HCP-Users] HCP Young Adult Genetics Data Released on dbGaP!!

Hi Jenifer, I would use the search string: MH091657 OR "Human Connectome Project" to search PubMed for manuscripts that have correctly cited the WU-Minn-Oxford HCP grant (over 500 to date!). I am not aware of papers that fit your criteria, but Tom Nichols (CC'd) would know what's out there

Re: [HCP-Users] Gifti files in HCP - conversion to VTK

Hi all and thanks for your answers, Just as a quick follow up I figured out how to align the vtk and images after conversion. The thing is I am using medinria that seems to read the nifti header differently (through the ITK reader) than workbench is. Basically, I have seen thanks to the

Re: [HCP-Users] MEG processing pipelines

Hi Tim and Benjamin, @Tim: Thank you very much for your comments @Benjamin: You can find the 4k spheres that were used for the released MEG data in the MEG pipeline in https://github.com/Washington-University/megconnectome/tree/master/template I also try Tim’s advice on using -cifti-resample