I would post this on the FSL list because Jesper would need to tell you what to
do with your data.
Matt.
From:
mailto:hcp-users-boun...@humanconnectome.org>>
on behalf of Leonardo Tozzi mailto:lto...@stanford.edu>>
Date: Wednesday, August 1, 2018 at 5:19 PM
To:
To Whom it may concern,
I am trying to run the diffusion processing portion of the pipeline on my data,
but it is failing in the eddy step with the following error message:
Wed Aug 1 11:13:12 PDT 2018 - run_eddy.sh:
/share/software/user/open/fsl/5.0.10/bin/eddy_openmp
This is really a question about FEAT for the FSL list.
I would recommend using the CIFTI data output by the HCP Pipelines with other
tools (such as connectome workbench) for doing seed-based functional
connectivity with HCP Pipelines processed data.
Matt.
From:
Number of components depends on a large number of things including length of
run, TR, voxel resolution, brain state, and amount of motion. In general as
scans improve/have more information in them you will get more total components.
Also as you have more motion in a scan, this will increase
Dear HCP community,
While the number of "good" and "bad" components certainly depends on the fMRI
paradigm, such as a specific task versus a resting state scan, as well as the
quality of the scan and similarity to training data (I'm using
HCP_hp2000.RData), is there in general an expected
Do you have the latest version of gradunwarp?
Matt.
On 7/31/18, 11:32 PM, "hcp-users-boun...@humanconnectome.org on behalf of
Marc Dubin" wrote:
>Hello All, When I run PreFreeSurferPipelineBatch.sh I get the following
>error. I tried installing Python 2.7, but I still get the same error.
>
