Re: [HCP-Users] Inquiry of how to process HCP structural data

2019-01-10 Thread Glasser, Matthew
If you load the .spec file in Workbench, you will get an array of useful files. Matt. From: ndyeung mailto:ndye...@hku.hk>> Date: Thursday, January 10, 2019 at 5:24 PM To: Timothy Coalson mailto:tsc...@mst.edu>>, Matt Glasser mailto:glass...@wustl.edu>> Cc:

Re: [HCP-Users] Inquiry of how to process HCP structural data

2019-01-10 Thread ndyeung
Dear Tim, Matt and HCP users, Thanks for the help. Does that mean I should work on the MNINonLinear > T1w.nii and load it into FreeSurfer? Or which file(s) have already been through FreeSurfer's gyral and sulcal parcellation? Best, Andy From: Timothy

Re: [HCP-Users] Inquiry of how to process HCP structural data

2019-01-10 Thread Timothy Coalson
For display, another possibility is to put the analysis results for all areas into a parcellated cifti file, which will show each area in a color representing the value for that area. Tim On Thu, Jan 10, 2019 at 6:17 AM Glasser, Matthew wrote: > > >1. These would not be with the HCP's

[HCP-Users] calculate beta and t value of new contrast

2019-01-10 Thread Irisqql0922
Dear Team, I have some trouble in calculating data with AWS data: I want to use beta value and t value of face-tool contrast of working memory task, but it seems that there is no such data on AWS (I understand that there are face-fix and face-avg contrast on AWS, but they are not

Re: [HCP-Users] Inquiry of how to process HCP structural data

2019-01-10 Thread Glasser, Matthew
1. These would not be with the HCP's parcellation, but rather with FreeSurfer’s gyral and sulcal parcellation. The values are of the subject’s physical brain space, not after registration to MNI space. 2. You could load the label file in Connectome Workbench and turn off the other