Re: [HCP-Users] RE-POSTING: Duplicate subjects in Connectome in a Box?

2019-06-07 Thread Harms, Michael
Are you sure that there is duplication of actual *data* on the different drives? Just because a subject ID appears on multiple drives doesn’t mean that data under that subject ID is the same on the drives. Cheers, -MH -- Michael Harms, Ph.D.

Re: [HCP-Users] RE-POSTING: Duplicate subjects in Connectome in a Box?

2019-06-07 Thread Glasser, Matthew
1. I don’t know, but perhaps someone from NRG can answer. 2. Those are different smoothing levels. I do not recommend using more than s4 and personally don’t use anything but s2. You can see Coalson et al 2018 PNAS: https://www.pnas.org/content/115/27/E6356.short for the deleterious

[HCP-Users] RE-POSTING: Duplicate subjects in Connectome in a Box?

2019-06-07 Thread Fales, Christina L
Hi HCP gurus: I'm reposting the following question(s) in hopes that one of you knows the answer. (1) On looking through the data, it appears that there is duplication between the drives delivered. Is that intentional? We received 12 drives, but four of them appear to be duplicates.

Re: [HCP-Users] wb_command -convert-matrix4-to-workbench-sparse

2019-06-07 Thread Timothy Coalson
Tractography visualization is somewhat rough around the edges. What was the full probtrackx command you used? Do you have bingham parameter volumes for the fiber orientations (mean, stdev, theta, phi, psi, ka, kb), or only the fiber orientation sample volumes? Tim On Fri, Jun 7, 2019 at 7:48

Re: [HCP-Users] A minor question regarding HCP 7T movie data

2019-06-07 Thread Harms, Michael
Hi, It isn’t surprising that data will be missing in some subjects, due either to problems at the scanner, or problems during processing. Cheers, -MH -- Michael Harms, Ph.D. --- Associate Professor of Psychiatry Washington University

Re: [HCP-Users] A minor question regarding HCP 7T movie data

2019-06-07 Thread Reza Rajimehr
Thanks Keith! I am currently working with the Movie Task fMRI 2mm/32k FIX-Denoised (Compact) dataset, and I noticed the issues below: 1) Two subjects (126931 and 74) do not have MSMAll-registered time-series data. 2) Five subjects (181636, 473952, 536647, 552241, and 973770) have two runs

[HCP-Users] wb_command -convert-matrix4-to-workbench-sparse

2019-06-07 Thread DE CASTRO Vanessa
Good morning, I would like to transform my data obtained with fsl's probtackx, to visualized them with wb_view. But the instructions to run the command is not clear for me. I've tried several choices but there is always something missing or nor recognized (I'm very naive with all this.. just