Re: [HCP-Users] Convert NIfTI to CIFTI with wb_command

2017-06-04 Thread Glasser, Matthew
gt; Cc: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] Convert NIfTI to CIFTI with wb_command I am talking about individuals data represented in NIfTI files (i.e, individual's R-fMR

Re: [HCP-Users] Convert NIfTI to CIFTI with wb_command

2017-06-04 Thread Keren Kotler
1 AM > To: "hcp-users@humanconnectome.org" > Subject: [HCP-Users] Convert NIfTI to CIFTI with wb_command > > Hello, > > I'm currently graduate student, working on a small software for specific > analysis of fMRI data. My analysis tool work with CIFTI format, but I want

Re: [HCP-Users] Convert NIfTI to CIFTI with wb_command

2017-06-03 Thread Glasser, Matthew
Keren Kotler mailto:kerenkotl...@gmail.com>> Date: Saturday, June 3, 2017 at 8:31 AM To: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" mailto:hcp-users@humanconnectome.org>> Subject: [HCP-Users] Convert NIfTI to CIFTI with wb_command Hello, I

[HCP-Users] Convert NIfTI to CIFTI with wb_command

2017-06-03 Thread Keren Kotler
Hello, I'm currently graduate student, working on a small software for specific analysis of fMRI data. My analysis tool work with CIFTI format, but I want that users will have the option to insert as input normalized (according to MNI) NIfTI files instead of converting them to CIFTI by themselves.

Re: [HCP-Users] Convert NIFTI to CIFTI

2015-11-23 Thread Donna Dierker
Yes, I have, like so: wb_command -cifti-convert -from-nifti ${NiftiIn} ${CiftiTemplate} ${CiftiOut} -reset-scalars But not in the context you describe. I was using randomise to generate group permuted t-maps and then bring them back to cifti before doing TFCE on the surface. (Now I use PALM

Re: [HCP-Users] Convert NIFTI to CIFTI

2015-11-23 Thread Timothy Coalson
The -cift-convert command is only files that are organized the way cifti is - the data in question has to have already been in cifti space before using the command will do anything for you. The nifti files written and accepted by the command are "fake" nifti files, they only superficially resemble

[HCP-Users] Convert NIFTI to CIFTI

2015-11-23 Thread Joe Borrello
Hi, I'm a PhD student just getting started on a project that involves analyzing some data from the 500 subjects release and wanted to know if anyone has had any experience using the *-cifti-convert -from-nifti *operations to make cifti files. Ultimately, the goal is to compare test-retest variabili