Please update workbench to 1.3.2, there was a bug in that command in 1.2.3.
Tim
On Thu, Sep 20, 2018 at 4:45 PM, JOANA LOUREIRO wrote:
> Hello Mathew and Tim,
>
> Thank you for your replies.
> When I use the command -cifti-create-dense-from-template as Tim
> suggested, I get the following
Yes, that is the problem. Somehow, the ROI cifti file was created without
a cortical mask that excludes the medial wall. The quick way to solve this
is to use -cifti-create-dense-from-template, which ensures its output
matches the indices of the template file (but can take many different types
>>
on behalf of JOANA LOUREIRO mailto:jloure...@ucla.edu>>
Date: Thursday, September 20, 2018 at 4:49 PM
To: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
mailto:hcp-users@humanconnectome.org>>
Subject: [HCP-Users] beta extraction from ROI using c
We are an HCP diseased connectome site.
I used PALM to compute group differences between patients and controls at
baseline. After using -cifti-find-clsters on the fwep maps obtained from
palm. I multiplied the obtained cluster map with a structural mask of of
the amygdala. The resulting ROI
