Re: [HCP-Users] eLORETA for source reconstruction

2016-10-27 Thread mehdy dousty
Thanks for your response. I would like to ask how can I program the level of the noise by mfile. I am using the below code right now but I dont know how to let the fieldtrip know my covariance matrix is the room noise. I look forward to hearing from you. Thanls cfg = []; cfg.covariance = 'yes';

Re: [HCP-Users] eLORETA for source reconstruction

2016-10-24 Thread Georgios Michalareas
Hi again, I think I misunderstood your question before. I think by noise you mean a baseline compared to which you compare your actual activity. Well the problem with resting state is that there is no baseline and doing a singular value decomposition and taking the smaller eigenvalue of the

Re: [HCP-Users] eLORETA for source reconstruction

2016-10-24 Thread mehdy dousty
Thanks for your answer. as it is resting state I can have 1 trial or keep the trial existed in the pre-processed signals,147trails, Based on the paper by Sylvain Baillet with title of "The brain resting-state activity is shaped by synchronized cross-frequency coupling of neural oscillations" the

Re: [HCP-Users] eLORETA for source reconstruction

2016-10-24 Thread Georgios Michalareas
Hi , I think you can still do it with ft_timelockanalysis. I assume that the resting state data you mention has only one trial. then if you just do: cfg=[]; cfg.covariance='yes'; pseudoavg=ft_timelockanalysis(cfg, data); then it will just compute the average across trials but as there is

[HCP-Users] eLORETA for source reconstruction

2016-10-24 Thread mehdy dousty
Hello, I am using HCP MEG resting state to compute source localization. As it is resting state signal and I am using Fieldtirp I have no idea how to compute the noise covariance matrix. Mostly this matrix is computed with ft_timelockanalysis with the window of [-inf 0] in task-based MEG I really