Re: [HCP-Users] GradientDistortionUnwarp error help.

2018-07-17 Thread Glasser, Matthew
--t2templatebrain="$T2wTemplateBrain" \ --t2template2mm="$T2wTemplate2mm" \ --templatemask="$TemplateMask" \ --template2mmmask="$Template2mmMask" \ --brainsize="$BrainSize" \

Re: [HCP-Users] GradientDistortionUnwarp error help.

2018-07-17 Thread Hawasli, Ammar
2template2mm="$T2wTemplate2mm" \ --templatemask="$TemplateMask" \ --template2mmmask="$Template2mmMask" \ --brainsize="$BrainSize" \ --fnirtconfig="$FNIRTConfig" \ --fmapmag="$Magnitud

Re: [HCP-Users] GradientDistortionUnwarp error help.

2018-07-17 Thread Glasser, Matthew
ot;Hawasli, Ammar" mailto:hawas...@wustl.edu>> Cc: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] GradientDistortionUnwarp error help. HI - looks like maybe the fieldmap inputs are not s

Re: [HCP-Users] GradientDistortionUnwarp error help.

2018-07-17 Thread Steve Smith
HI - looks like maybe the fieldmap inputs are not setup correctly? Cheers. > On 17 Jul 2018, at 12:19, Hawasli, Ammar wrote: > > Hello All, > > I am having a bug with my Gradient Distortion Unwarp process in prefreesurfer > and wanted to reach out for ideas. > > This is what is shows: >