Re: [HCP-Users] Myelin Mapping

2015-05-07 Thread Barbara Kreilkamp
Okay, thank you to both of you. Best wishes, Barbara Anne On 07/05/2015 03:35, Glasser, Matthew wrote: That’s a good point and would still be true of the current version of the HCP Pipelines. While we don’t rely on FNIRT to align cortex, it is still used to make the initial brain mask, and

Re: [HCP-Users] Slice Timing Correction

2015-05-07 Thread Glasser, Matthew
I wouldnt do it for HCP data. Really it seems like if you were to do something like this, youd want to do it at the same time as motion correction and distortion corrections in one single giant interpolation. A better idea for many reasons is to just image fast enough so that it doesnt matter.

[HCP-Users] HCP Anatomical FA values.

2015-05-07 Thread Chiu, Bryan (PHTH)
Hi, I have a few questions that I hope someone can outline for me. My goal at the moment is to extract FA values for anatomical regions in the brain within the HCP participants. I was attempting to closely follow the pipeline outlined in this link

Re: [HCP-Users] [HCP-All] CANCELLED: 4/18/15: HCP Data Server Move and Outage

2015-05-07 Thread Schweiss, Chip
If it is not truck rental issues it's mother nature. 80% chance of thunderstorms on Saturday. We will try for May 16th. Thank you! -Chip Original Message From: Schweiss, Chip schwei...@mir.wustl.edu Sent: Thursday, April 30, 2015 08:45 AM To:

Re: [HCP-Users] Slice Timing Correction

2015-05-07 Thread Harms, Michael
HI Arjuna, We don't have much experience here with using SPM. If SPM has a mode for specifying acquisition time (rather than order), then yes, I would think that you should just be able to use the times specified in that file. Also, since you found the timing file, I assume you've seen