Re: [HCP-Users] aws s3 access

Hi Michael, For what you are describing and what I was trying initially I'm getting these nasty errors: A client error (PermanentRedirect) occurred when calling the ListObjects operation: The bucket you are attempting to access must be addressed using the specified endpoint. Please send all

[HCP-Users] aws s3 access

Hi Denis, I'm able to achieve what I think you're after with the following: I get the bucket contents with a non-recursive ls call - aws s3 ls s3://hcp-openaccess --profile USER Then I'm able to do a recursive listing akin to what you did but with the subdirectory - aws s3 ls

[HCP-Users] aws s3 access

Dear HCPs, currently I'm trying to access the HCP data from the command line on Linux. I configured the access keys based on the console options in the ConnectomeDB. With other buckets a command like this would work: aws s3 ls s3://BUCKET-NAME --recursive --human-readable --summarize --profile

Re: [HCP-Users] "good" vs. "bad" components in ICA-FIX denoised rsfMRI data

Oh okay, still using the 500 Subjects Release data and didn’t think to look for hidden files. I see it now. Thanks to both of you! -Ely ___ HCP-Users mailing list HCP-Users@humanconnectome.org

[HCP-Users] behavioral data: unadjusted vs age-adjusted

Hi HCP users, In the HCP behavioral dataset (WU-Minn) often 2 values are reported for a parameter: unadjusted and age-adjusted (ex: Endurance_Unadj and Endurance_AgeAdj). I looked at the NIH Toolbox but I wasn't able to find the method for how the age-adjusted value was calculated.

Re: [HCP-Users] "good" vs. "bad" components in ICA-FIX denoised rsfMRI data

Hi > On 9 Mar 2016, at 15:24, Harms, Michael wrote: > > > Hi Steve, > I’m not seeing a file by that name in the HCP FIX processing. apologies - I was looking at an example folder from when we trained FIX that's the hand training output - which wasn't what was asked for

Re: [HCP-Users] "good" vs. "bad" components in ICA-FIX denoised rsfMRI data

Hi Steve, I’m not seeing a file by that name in the HCP FIX processing. In the 900 subject release data, there should be files in the rfMRI_REST?_{LR,RL}_hp2000.ica folders called Noise.txt and Signal.txt that contain the classifications.  But those files are created as part of

Re: [HCP-Users] Cortical parcellations in Connectome Workbench and FreeSurfer

Great thanks for your helpful reply. Unfortunately I'm not working with the HCP data exclusively. In addition we have our own data which has been pre-processed with the standard FreeSurfer -recon-all pipeline. Thus these subjects do not have a 32k or 164k mesh, instead they have typical output

Re: [HCP-Users] "good" vs. "bad" components in ICA-FIX denoised rsfMRI data

Hi - it's the same as in standard FIX usage - the file listing bad components is called hand_labels_noise.txt - inside the ICA output folder. Cheers > On 9 Mar 2016, at 03:25, Ely, Benjamin wrote: > > Hi all, > > I’m interested in running some analyses (particularly