Re: [HCP-Users] change dimensions in a cifti file

wb_command -cifti-average-roi-correlation ${basedir}/${idfolder}/${idfolder}_FCmap_from_seed.dscalar.nii -cifti-roi seed.dscalar.nii –cifti RS_fMRI_1_Atlas_x4_mov_regr_b_lt_resid_brain_regr_resid_frcintrp_bpss_lc800_hc2.dtseries.nii The same command works for some dtseries.nii but not for

Re: [HCP-Users] Subcortical surface sampling outside borders of CIFTI

I would map from volume to surface from the regular volume data without smoothing and then do the smoothing on the surface (which is what we do for the cerebral cortex). What structures do you have surfaces of subcortically? It might make the most sense to use the ICA+FIX cleaned data for

Re: [HCP-Users] [SPAM] 答复: PhaseEncodinglist

I think that either works (at least for spin echo field maps). Let me know if it doesn’t. Peace, Matt. From: wtj <1257735...@qq.com> Date: Monday, April 17, 2017 at 8:54 AM To: Matt Glasser > Subject: [SPAM] 答复:

[HCP-Users] Subcortical surface sampling outside borders of CIFTI

Hi HCP, I am extracting resting state data from subcortical surfaces. Initially, I had planned to do this based on the subcortical voxels included in the CIFTI file (i.e. rfMRI_REST1_LR_Atlas_MSMAll_hp2000_clean.dtseries.nii), however, some parts of my surfaces fall slightly outside the

Re: [HCP-Users] PhaseEncodinglist

Which pipeline are you asking about? Peace, Matt. From: > on behalf of wtj <1257735...@qq.com> Date: Monday, April 17, 2017 at 6:29 AM To:

[HCP-Users] PhaseEncodinglist

Hi, This question is small, but I can't find anyone who know it, so I ask you: In process pipeline of lifespan rfMRI data, the PhaseEncodinglist contains phase encoding direction indicators for each corresponding task in the Tasklist. There is a .csv file in data file directory shows "-x", but