Re: [HCP-Users] unsmoothed ROI to smoothed cifti correlation

Looks like it does what you wanted. Side note, if you have multiple non-overlapping ROIs to do this with, you could also make them into a dlabel file, then use -cifti-parcellate on the timeseries, and do a -cifti-cross-correlation using it and the smoothed dtseries. However, you'll need to

Re: [HCP-Users] merge multiple dtseries.nii into one dscalar.nii?

Use -cifti-merge to make a concatenated dtseries, then you can use -cifti-change-mapping to convert it to dscalar. Tim On Thu, May 4, 2017 at 3:22 PM, Xavier Guell Paradis wrote: > Dear HCP experts, > Is there a way I can create a dscalar.nii file which contains four >

Re: [HCP-Users] unsmoothed ROI to smoothed cifti correlation

Good to know, thanks - that's consistent with what I'm seeing. Will keep the transformation for now. For future ref to anyone trying this, the corrected sequence is: 1) Extract mean unsmoothed ROI data to text: wb_command -cifti-roi-average ${sub}_${run}.dtseries.nii

[HCP-Users] merge multiple dtseries.nii into one dscalar.nii?

Dear HCP experts, Is there a way I can create a dscalar.nii file which contains four cope.dtseries.nii files as four different maps? I have been exploring different possibilities with wb_command but can't find the way to do it. Thank you very much, Xavier.

Re: [HCP-Users] unsmoothed ROI to smoothed cifti correlation

To be clear, depending on the r-value, the Fisher’s z-transform may not change the value much, but that doesn’t mean that the correlation (Pearson’s r) has a *distribution* that is close to Gaussian. cheers, -MH -- Michael Harms, Ph.D.

Re: [HCP-Users] unsmoothed ROI to smoothed cifti correlation

Ah that makes sense, thanks! The effect of the z transformation is quite subtle (as expected since the correlation distributions are close to gaussian before transformation). From: Harms, Michael [mha...@wustl.edu] Sent: Thursday, May 04, 2017 10:21 AM To: Ely,

[HCP-Users] HCP 900 PTN release question

I'm trying to download the PTN release of HCP-900 in order to get the netmats, but I'm having trouble locating this data either on AWS (preferred) or on db.humanconnectome.org Can someone direct me to where this release is located? Also, is there a timeline for when a PTN release for HCP-1200

Re: [HCP-Users] unsmoothed ROI to smoothed cifti correlation

I would probably z transform before averaging across runs, so that you are averaging something with at least an approximately gaussian distribution. cheers, -MH -- Michael Harms, Ph.D. --- Conte Center for the Neuroscience of Mental

Re: [HCP-Users] Fwd: Fwd: Error in fMRI Volume Processing Pipeline

This tool should help: http://nrg.wustl.edu/software/dicom-browser/ Peace, Matt. From: > on behalf of Lisa Kramarenko > Date: Thursday, May 4, 2017

[HCP-Users] Fwd: Fwd: Error in fMRI Volume Processing Pipeline

Thanks so much. I am not sure as to where find the necessary DICOM fields ((0019,1028) for BandwidthPerPixelPhaseEncode and (0051,100b) for # of phase encoding samples). Where should I look for them? Thanks again! On 3 May 2017 at 21:08, Glasser, Matthew wrote: > Indeed you

Re: [HCP-Users] Fwd: Error in fMRI Volume Processing Pipeline

Thanks so much. I am not sure as to where find the necessary DICOM fields ((0019,1028) for BandwidthPerPixelPhaseEncode and (0051,100b) for # of phase encoding samples). Where should I look for them? Thanks again! On 3 May 2017 at 21:08, Glasser, Matthew wrote: > Indeed you