[HCP-Users] probtrackx network with HCP data and MMP parcellation

2017-08-31 Thread Gopalakrishnan, Karthik
Hi all, I ran probtrackx for HCP subject 100206 using the MMP1.0 Glasser surface ROIs. My seeds in each ROI are at the white matter-gray matter boundary. I ran probtrackx in network mode as well as seed-to-ROI mode for the subject, and I applied the method described in

Re: [HCP-Users] intracranial volume < brain volume!

2017-08-31 Thread Harms, Michael
IntraCranial volume is based entirely on the determinant of the talairch transform. We don’t check the accuracy of that transform because it doesn’t even need to be accurate for FreeSurfer to generate correct surfaces and segmentations. So, frankly, I wouldn’t use the IntraCranial volume

Re: [HCP-Users] Question about restricted data

2017-08-31 Thread Elam, Jennifer
Hi Claude, You can direct your questions to me. If we can stay sufficiently general about the scores I'll post the answer to the list for everyone's benefit. Best, Jenn Jennifer Elam, Ph.D. Scientific Outreach, Human Connectome Project Washington University School of Medicine Department of

[HCP-Users] Question about restricted data

2017-08-31 Thread Claude Bajada
Dear all, I have a question about some scores on the restricted data. I don't think that I'd be divulging anything in particular but just to be safe, is there a restricted mailing list or a specific person I can send the question to in order to be sure not to break any terms? Regards, Claude