Re: [HCP-Users] CIFTI tools in the Python

Nibabel should support cifti files now, though it may be fairly basic: https://github.com/nipy/nibabel I don't know of other projects for cifti in python. Tim On Wed, Oct 11, 2017 at 11:18 PM, Aaron Crank wrote: > Dear HCP experts, > > > I have a question about

[HCP-Users] CIFTI tools in the Python

Dear HCP experts, I have a question about loading CIFTI files in the Python. Would you please suggest if there are any well-established tools in the Python to work with CIFTI format files? Thank you. ___ HCP-Users mailing list

[HCP-Users] UMN Informatics Institute - Neuroimaging Staff Scientist posting

The University of Minnesota Informatics Institute (UMII) seeks a skilled, staff scientist to serve the MR Neuroimaging research community at the University of Minnesota. The successful candidate is expected to: (1) carry out consultations with researchers

Re: [HCP-Users] Combining rfMRI data for different phase encoding directions

It was probably killed because it ran out of memory. The best solution is to use a machine with more memory. A workaround, but one that will take a LOT more time to run on each subject (unless you happen to already have fast SSDs), is to add swap space to your system, which will allow it to

Re: [HCP-Users] Combining rfMRI data for different phase encoding directions

Dear Matt: I turned off the array size limit in Matlab, then ran again hcp_fix_multi_run. I cannot see any error in .fix.log file but cleaned data was not generated. One thing I can notice in the terminal is that some process is killed automatically. Please see below: FIX Applying cleanup

Re: [HCP-Users] eravg for MEG Working memory dataset for face condition

yes I guess you are right, it looks like all files are organized into subdirectories at the end of the pipeline using hcp_megrelease.sh so it should work like that :) thanks again jd Le 11/10/2017 à 16:56, Georgios Michalareas a écrit : I think as long as these files are in the MATLAB

Re: [HCP-Users] eravg for MEG Working memory dataset for face condition

I think as long as these files are in the MATLAB path the pipelines should work so you just have to the matlab path the directory where they are or always work in this directory i guess On 10/11/2017 4:23 PM, Jean-Didier Lemarechal wrote: waouh !!! thank you so much for this clear and

Re: [HCP-Users] eravg for MEG Working memory dataset for face condition

waouh !!! thank you so much for this clear and detailled help... I used the same idea as you proposed with a contrastList and the script hcp_eravg_contrasts.m (to try to keep in line with the pipeline philosophy...) because the next thing I would like to do is the source localization of