Re: [HCP-Users] Resting State processing

Does the file exist? That might be the old config file it is looking for suggesting that you don’t have the latest master. Peace, Matt. From: Timothy Hendrickson > Date: Monday, January 8, 2018 at 9:15 AM To:

Re: [HCP-Users] connectivity matrices

That might be better answered on the FSL list. Peace, Matt. From: > on behalf of Xinyang Liu > Date: Monday, January 8, 2018 at 8:23 AM To: HCP 讨论组

Re: [HCP-Users] A question about the geodesic distance

To clarify further, until a surface registration is done, there is no obvious relationship between the vertices of one subject and another (and the surfaces even have different numbers of vertices). After registration and resampling to a standard mesh (MSMAll and fs_LR 32k are options for these

Re: [HCP-Users] A question about the geodesic distance

Hi Matt, Thank you for looking into my question. I am trying to compare geodesic distance between a given pair of brain vertices across different subjects, so I hope I would be able to locate the same brain vertex in different subjects. Is this feasible using the data after MSM-All

Re: [HCP-Users] Resting State processing

Hello all, Despite having the most recent version of the hcp pipeline (3.22) and downloading the MSM configuration binaries, however, I am still receiving an error when I attempt to run the PreFreeSurfer pipeline with RegName="MSMSulc". This is the error message I receive:

[HCP-Users] connectivity matrices

Dear HCP experts, Hi. We are doing brain structural network study based on HCP diffusion data and FSL. We want to acquire 90*90 and 1024*1024 ROI connectivity matrices of the whole brain, which is based on probabilistic tracing with the FSL probtrackx2 --network mode. However, our running