[HCP-Users] Workbench v1.3.1 Released - a few bug fixes and new features

2018-06-05 Thread Elam, Jennifer
News from the Human Connectome Project (HCP) June 5, 2018 Connectome Workbench v1.3.1 Released Announcing version 1.3.1 of Connectome Workbench (WB) brain visualization and analysis software, which fixes a few bugs and adds a

[HCP-Users] perceptually uniform sequential colormaps?

2018-06-05 Thread Harms, Michael
Hi guys, Which of the colormaps currently in Workbench are perceptually uniform and monotonically increasing in lightness? In the interest of supporting some of the recent colormaps with considerable thought behind them, what about including the viridis, plasma, inferno, and magma colormaps

Re: [HCP-Users] error running hcp_fix

2018-06-05 Thread Glasser, Matthew
Well you have the path to the wb_command binary set as a directory instead of to the binary itself. Presumably in the past you had it set to the binary when it was working. Matt. From: Marta Moreno mailto:mmorenoort...@icloud.com>> Date: Tuesday, June 5, 2018 at 12:36 PM To: Matt Glasser

Re: [HCP-Users] error running hcp_fix

2018-06-05 Thread Marta Moreno
94 # Set this to the location of the HCP Workbench command for your platform 95 FSL_FIX_WBC='/Applications/workbench/bin_macosx64'; 96 export FSL_FIX_CIFTIRW FSL_FIX_WBC Thanks! *** Leah Moreno, PhD Associate Research Scientist Division of Experimental

Re: [HCP-Users] error running hcp_fix

2018-06-05 Thread Glasser, Matthew
What do you have on line 94 of the FIX settings.sh? Matt. From: Marta Moreno mailto:mmorenoort...@icloud.com>> Date: Tuesday, June 5, 2018 at 12:28 PM To: Matt Glasser mailto:glass...@wustl.edu>> Cc: "st...@fmrib.ox.ac.uk" mailto:st...@fmrib.ox.ac.uk>>, HCP Users

Re: [HCP-Users] error running hcp_fix

2018-06-05 Thread Marta Moreno
Dear Matt and all, R version 3.4. Matlab version 2017b. Workbench version 1.3. I am using a macOS Sierra version 10.12.6. I have installed all required versions from packages kernlab, party, etc. in R successfully, but after running hcp_fix I get the following error in .fix.log. Please