Re: [HCP-Users] TOPUP Settings

2018-08-29 Thread Glasser, Matthew
Hi Mike, As far as I know the only sure way is with trial and error, but perhaps the latest dcm2niix has eliminated that. Matt. From: mailto:hcp-users-boun...@humanconnectome.org>> on behalf of "Stevens, Michael" mailto:michael.stev...@hhchealth.org>> Date: Wednesday, August 29, 2018 at

[HCP-Users] TOPUP Settings

2018-08-29 Thread Stevens, Michael
Also, I'd like to confirm some settings for the HCP scripts, as I'm helping some colleagues set up a new protocol that we plan to use HCP pipeline processing on. For spin echo-based unwarping, if HCP's standard SE field map sequences are used and are acquired A>>P first, P>>A second, should

[HCP-Users] QC

2018-08-29 Thread Stevens, Michael
Just wondering... The SOP manual for HCP data

Re: [HCP-Users] Unable to download data even if test on IBM Aspera Connect was all OK

2018-08-29 Thread Elam, Jennifer
Hi Tong, Our IT expert says: His machine needs to connect asp-connect1.wustl.edu, not the other way around. Hopefully that information will help you and your IT get you connected. Best, Jenn Jennifer Elam, Ph.D. Scientific Outreach, Human Connectome Project Washington University School of

Re: [HCP-Users] Unable to download data even if test on IBM Aspera Connect was all OK

2018-08-29 Thread Wu, Tong
Dear Jenn, I've forward the email to IT in my institute. I also added TCP Port 33001 as a special connection in the Windows firewall (inbound, UDP 33001 was added before). IT told me that the two ports shall be able to access remote servers. However, I tried again, the downloading is still not

Re: [HCP-Users] two maximum points using -metric-extrema

2018-08-29 Thread Glasser, Matthew
You can use wb_command -metric-merge to extract single maps from the file for use in the FSL command. Matt. From: Xinyang Liu mailto:xinyang_ie...@163.com>> Date: Wednesday, August 29, 2018 at 2:10 AM To: Timothy Coalson mailto:tsc...@mst.edu>> Cc: Matt Glasser mailto:glass...@wustl.edu>>, HCP

Re: [HCP-Users] two maximum points using -metric-extrema

2018-08-29 Thread Xinyang Liu
Hi, Tim. Thank you very much for your detailed and helpful explanation. I finally understand how the two maps are stored in the .func.gii file. The problem I met is that the FSL surf2surf command can only convert the format of one ROI map even though there are two. I haven't got their reply