Please update workbench to 1.3.2, there was a bug in that command in 1.2.3.
Tim
On Thu, Sep 20, 2018 at 4:45 PM, JOANA LOUREIRO wrote:
> Hello Mathew and Tim,
>
> Thank you for your replies.
> When I use the command -cifti-create-dense-from-template as Tim
> suggested, I get the following
Yes, that is the problem. Somehow, the ROI cifti file was created without
a cortical mask that excludes the medial wall. The quick way to solve this
is to use -cifti-create-dense-from-template, which ensures its output
matches the indices of the template file (but can take many different types
I am guessing that somehow the medial wall ROIs did not get used in the PALM
analysis. Perhaps Anderson can help us understand how that could have
happened. It would probably help to give the command lines you used with PALM.
Matt.
From:
mailto:hcp-users-boun...@humanconnectome.org>>
on
We are an HCP diseased connectome site.
I used PALM to compute group differences between patients and controls at
baseline. After using -cifti-find-clsters on the fwep maps obtained from
palm. I multiplied the obtained cluster map with a structural mask of of
the amygdala. The resulting ROI
Hi Mike,
The available version of RestingStateStats is not meant to do any data cleanup.
The WM and CSF stuff was investigational and the failure of it to work very
well led to the temporal ICA paper available here:
https://www.sciencedirect.com/science/article/pii/S1053811918303963
My
Hi y'all... Quick question: We're reviewing the code in RestingStateStats.m to
make sure we're 100% on top of what each step does. We see several regression
steps to remove the WM and CSF signal. It seems like the built-in regression
coding removes global image effects at the same time. Is
