[HCP-Users] HCP Course 2019: Get ready for more data, and a new way of getting it

2019-03-04 Thread Elam, Jennifer
More HCP data are comingand will be released in a new way.will you be ready? This spring, the first data from the Lifespan Human Connectome Projects - (HCP) Development (healthy subjects ages 5-21) and HCP Aging (ages 36-100+) will be publicly released. Yay! Also, for the first time, w

Re: [HCP-Users] rs-fMRI with-in subject comparison

2019-03-04 Thread Harms, Michael
As for a version of the parcellation with network assignments, see here: https://github.com/ColeLab/ColeAnticevicNetPartition cheers, -MH -- Michael Harms, Ph.D. --- Associate Professor of Psychiatry Washington University School of Medicine

Re: [HCP-Users] rs-fMRI with-in subject comparison

2019-03-04 Thread Timothy Coalson
There isn't a dedicated command to get the parcel names, but they are in the output of wb_command -file-information on the parcellated file, or you can take them from -cifti-label-export-table on the dlabel file. Tim On Mon, Mar 4, 2019 at 1:55 AM Tali Weiss wrote: > i did > wb_command -cifti-

Re: [HCP-Users] MSMAll, missing _vn file

2019-03-04 Thread Glasser, Matthew
This issue will be resolved in the upcoming MR+FIX release. There is no simple workaround. Matt. Sent from my Verizon, Samsung Galaxy smartphone Original message From: Marta Moreno Date: 3/4/19 10:30 AM (GMT-06:00) To: HCP Users Subject: [HCP-Users] MSMAll, missing _vn fi

[HCP-Users] MSMAll, missing _vn file

2019-03-04 Thread Marta Moreno
Dear experts, I am running MSMAllPipelineBatch.sh after hcp_fix on a 10min run (rsfMRI) and getting an error saying that the file: "RS_fMRI_1_Atlas_hp2000_clean_vn_tempcompute.dscalar.nii" does not exist. I am using fsl 5.0.11 and fix 1.067. Any help? Thanks, Leah