Re: [HCP-Users] film_gls surface mode error Newmat: incompatible dimensions

2017-03-21 Thread Blazej Baczkowski
hich you can create by averaging the white and pial > surface coordinates). As for your command, it looks correct to me. Do the > surface and timeseries files display correctly in Connectome Workbench? Is > the medial wall masked? > > Peace, > > Matt. > > From: Blazej Bacz

[HCP-Users] film_gls surface mode error Newmat: incompatible dimensions

2017-03-21 Thread Blazej Baczkowski
Hello everyone, I encounter a problem with FSL's "film_gls" (v5.0.9) when performing first level GLM analysis in surface mode. Data were projected to fsaverage5 space (10242 vertices). It appears that the problem occurs when FILM estimates the autocorrelation, because it works perfectly fine with

Re: [HCP-Users] film_gls surface mode error Newmat: incompatible dimensions

2017-03-21 Thread Blazej Baczkowski
wrote: > Please post your film_gls command line. > > Peace, > > Matt. > > From: <hcp-users-boun...@humanconnectome.org> on behalf of Blazej > Baczkowski <bm.baczkow...@gmail.com> > Date: Tuesday, March 21, 2017 at 8:33 AM > To: "HCP-Users@humanconn

Re: [HCP-Users] film_gls surface mode error Newmat: incompatible dimensions

2017-03-22 Thread Blazej Baczkowski
any zeros on the medial wall? This issue could occur because of > timeseries with all zeros, as I recall. > > Peace, > > Matt. > > From: Blazej Baczkowski <bm.baczkow...@gmail.com> > Date: Tuesday, March 21, 2017 at 1:22 PM > To: Matt Glasser <glass...@wustl.edu>

Re: [HCP-Users] film_gls surface mode error Newmat: incompatible dimensions

2017-03-22 Thread Blazej Baczkowski
Works!!! Thanks a lot! Best, Blazej On 22 March 2017 at 13:11, Glasser, Matthew <glass...@wustl.edu> wrote: > You can use wb_command -metric-dilate first and then reapply the medial > wall mask on the outputs. > > Peace, > > Matt. > > From: Blazej Baczkowski &l