Re: [HCP-Users] Myelin Mapping

after the talk? On 20 February 2015 at 13:42, Glasser, Matthew glass...@wusm.wustl.edu wrote: If I recall correctly, they withdrew their SFN 2014 presentation. I don’t know the reason for that. Peace, Matt. From: Seán Froudist Walsh froud...@tcd.ie Date: Friday, February 20, 2015

[HCP-Users] Custom visualisation help

Hey all, I'm trying to get a colour display on a surface to match a colormap I have set up in matlab, and have run into a whole world of pain. I would greatly appreciate your help. I have created a label text file of the following format: TCpol_R 12552082081 TCs_R 2255

Re: [HCP-Users] Custom visualisation help

; > Matt. > > From: <hcp-users-boun...@humanconnectome.org> on behalf of Seán Froudist > Walsh <froud...@tcd.ie> > Date: Tuesday, June 20, 2017 at 7:04 PM > To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> > Subject: [HCP-Users] Cu

Re: [HCP-Users] Custom visualisation help

On 20 June 2017 at 20:08, Glasser, Matthew <glass...@wustl.edu> wrote: >> >>> I think you want wb_command -volume-label-import. >>> >>> Peace, >>> >>> Matt. >>> >>> From: <hcp-users-boun...@humanconnectome.org> on behalf of

Re: [HCP-Users] surf2surf

Hi Tim, Was there a response to the question about sumsDB requesting login information? I also ran into that problem a couple of days ago. Best wishes, Sean Sean Froudist-Walsh Postdoc New York University On 16 October 2017 at 16:49, Timothy Coalson wrote: > The

Re: [HCP-Users] Dear HCP users,

Hi Yassine, If you're interested in surface visualisation, Guillaume Flandin's gifti toolbox for Matlab ( http://www.artefact.tk/software/matlab/gifti/ ) is an alternative. That way you can create any colour palette you like (or choose one of Matlab's ready-made options). Cheers, Sean On 18

Re: [HCP-Users] volume to average surface with Nearest Neighbour interpolation

or, more accurately, I would like to ask if my understanding of the surface registration, conversions and wb_command steps is correct. Thanks, Sean On 15 January 2018 at 13:43, Seán Froudist Walsh <froud...@tcd.ie> wrote: > Dear Matt and Tim, > > Thanks for your he

Re: [HCP-Users] volume to average surface with Nearest Neighbour interpolation

Perfect, thank you On 17 January 2018 at 18:52, Timothy Coalson <tsc...@mst.edu> wrote: > Inline comments. > > Tim > > On Mon, Jan 15, 2018 at 12:43 PM, Seán Froudist Walsh <froud...@tcd.ie> > wrote: > >> Dear Matt and Tim, >> >> Thanks fo

[HCP-Users] volume to average surface with Nearest Neighbour interpolation

Dear HCP experts, I am interested in mapping individual voxels in a subject's FreeSurfer conformed space (orig.nii) onto the HCP template (fsaverage_LR) while maintaining the original voxel values. All of the voxels lie within the LH cortical ribbon in the (conformed) volume space. There are 186