Re: [HCP-Users] [SPAM] Physio for 7T data

2018-01-25 Thread Jennifer Elam
ter, or has physio not been collected for the 7T > data? > > - Anders > > ___ > HCP-Users mailing list > HCP-Users@humanconnectome.org > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > Jennifer Elam, Ph.D. Scientific

Re: [HCP-Users] structrual extended package for HCP_900 subjects on aws

2016-04-19 Thread Jennifer Elam
of the data in Amazon S3. We’ll send out another announcement when S3 is up to date. Best, Jenn Jennifer Elam, Ph.D. Scientific Outreach, Human Connectome Project Washington University School of Medicine Department of Neuroscience, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362-9387

Re: [HCP-Users] structrual extended package for HCP_900 subjects on aws

2016-04-15 Thread Jennifer Elam
that are not in the main Structural Preprocessed packages. The structural extended packages are included in the S900 Connectome in a Box, which is available for order now. Best, Jenn Jennifer Elam, Ph.D. Scientific Outreach, Human Connectome Project Washington University School of Medicine Department

Re: [HCP-Users] Q900 task downloads

2016-01-25 Thread Jennifer Elam
Hi Janine, The task analysis packages are actually available separately for 2mm and 4mm smoothing levels for grayordinates data. The reason the package sizes have gotten twice as big for S900 subjects is that now both MSM-Sulc and MSM-All registered versions are included in the packages for each

Re: [HCP-Users] (no subject)

2015-12-28 Thread Jennifer Elam
Yes, the preprocessed "Structural Extended" package for each subject has the Freesurfer outputs that are intermediates in the HCP preprocessing pipelines. More info about the files output from the HCP pipelines that toy ate unfamiliar worth is available in the HCP Reference Manual for the 900

Re: [HCP-Users] Custom parcellation for HCP data

2015-12-16 Thread Jennifer Elam
for preorders. Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362-9387 el...@pcg.wustl.edu www.humanconnectome.org From

Re: [HCP-Users] Is NIH Toolbox Dexterity Data for Dominant Hand?

2015-12-14 Thread Jennifer Elam
Hi John, Yes, the scores HCP distributes for dexterity (the only scaled scores NIH Toolbox sends back to us for dexterity) are for the dominant hand. Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department

Re: [HCP-Users] ASQ and SSAGA

2015-12-02 Thread Jennifer Elam
ted-access-overview.html> ). Because HCP is a twin family study we have had to put in extra safeguards to protect the privacy and anonymity of our subjects. Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Depa

Re: [HCP-Users] Demographic and behavioral subject data

2015-11-30 Thread Jennifer Elam
been mostly minor and have only added to the data available (more details to come). Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St. Louis, MO

Re: [HCP-Users] Demographic and behavioral subject data

2015-11-30 Thread Jennifer Elam
lant, aneurism clip) Moderate to Severe Claustrophobia Hope that helps. Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St. Louis, MO 63110

Re: [HCP-Users] Demographic and behavioral subject data

2015-11-30 Thread Jennifer Elam
of all the current information that might affect your results. Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362-9387 e

Re: [HCP-Users] Demographic and behavioral subject data

2015-11-30 Thread Jennifer Elam
tomeDB dashboard by fMRI reconstruction version (in the Study Completion category). See Ramifications of Image Reconstruction Version Differences <https://wiki.humanconnectome.org/x/RQBJB> for more details. Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Projec

Re: [HCP-Users] Tractography on diffusion data for SC matrices

2015-11-23 Thread Jennifer Elam
Hi Joelle and all, HCP does have running bedpostX on the diffusion data for HCP Subjects on our to do list, but this data has not been released yet. We are hoping to have this available to users by late winter/early spring 2016 after we release 7T data. Best, Jenn Jennifer Elam, Ph.D

Re: [HCP-Users] Phase Encoding left-to-right and right-to-left

2015-11-23 Thread Jennifer Elam
#3 on https://wiki.humanconnectome.org/display/PublicData/HCP+Users+FAQ may be of help. Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St

Re: [HCP-Users] n=900 release?

2015-11-16 Thread Jennifer Elam
Hi Angus, We are furiously working on getting the 900 Subject Release out to users. We are hoping to get it out by Thanksgiving if everything goes smoothly this week. Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine

Re: [HCP-Users] Custom parcellation for HCP data

2015-11-15 Thread Jennifer Elam
that are not in NIFTI/GIFTI/CIFTI format. Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362-9387 el...@pcg.wustl.edu

[HCP-Users] Subject 142626 removed from ConnectomeDB

2015-11-06 Thread Jennifer Elam
Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362-9387 <mailto:el...@pcg.wustl.edu> el...@pcg.wustl.edu

Re: [HCP-Users] query regarding clinical scores

2015-11-05 Thread Jennifer Elam
to get two or more arrests in a 12-month period for alcohol-related offenses without meeting criteria for alcohol dependence (which would preempt the diagnosis of DSM-IV alcohol abuse). Let us know if you need any more information about this. Best, Jenn Jennifer Elam, Ph.D. Outreach

Re: [HCP-Users] Hcp Data with non-overlapping parcellations

2015-11-04 Thread Jennifer Elam
files (both hemispheres). Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362-9387 el...@pcg.wustl.edu

Re: [HCP-Users] Another corrupted diffusion MRI data set found (Subject #103515)

2015-10-30 Thread Jennifer Elam
e data and release notes as you are doing your analyses because, while we try to catch everything, a few little glitches get by us in a project the size of HCP. Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Depa

Re: [HCP-Users] downsample

2015-10-29 Thread Jennifer Elam
RIC Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362-9387 <mailto:el...@pcg.wustl.edu> el...@pc

Re: [HCP-Users] HCP course data

2015-10-09 Thread Jennifer Elam
not yet been released in ConnectomeDB otherwise. The arrangement of the data (directory structure) as distributed is also useful for running the practicals. We are fixing the download links to the Data Only archive. I’ll let the list know when all is fixed. Thanks, Jenn Jennifer

Re: [HCP-Users] HCP course data

2015-10-09 Thread Jennifer Elam
The links for downloading the HCP Course Data Only on the HCP Course website (http://humanconnectome.org/courses/2015/exploring-the-human-connectome.php) have now been fixed. The Data Only zip archive should be ~215GB. Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project

Re: [HCP-Users] Availability of genotype data

2015-10-01 Thread Jennifer Elam
unlikely that we will. Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362-9387 el...@pcg.wustl.edu

[HCP-Users] New NIH BRAIN initiative funding opportunity announcement released

2015-09-28 Thread Jennifer Elam
tp://grants.nih.gov/grants/guide/rfa-files/RFA-MH-16-750.html Application Due Date: *January 6, 2016* Budgets: $12M in FY2016 to fund 12-15 awards (up to $700,000 in direct costs per year). *Non-domestic (non-U.S.) Entities (Foreign Institutions) are eligible to apply.* -- Jennifer Elam, Ph.D. O

Re: [HCP-Users] Obtaining hires version of aparc.a2009s+aseg.mgz

2015-09-17 Thread Jennifer Elam
of the packages, it works (I just tried it) to open both these files in Workbench and setup the first as an underlay and the second as the overlay: {Subject_ID}/T1w/{Subject_ID}/mri/T1w_hires.nii.gz {Subject_ID}/T1w/aparc.a2009s+aseg.nii.gz Best, Jenn Jennifer Elam, Ph.D. Outreach

Re: [HCP-Users] how confirming twins' zygosity?

2015-09-03 Thread Jennifer Elam
verify the MZ/DZ desigations with genetic data, but if we do that it will be reported in a separate field in DB, called something like Genetic_zygosity. Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy

Re: [HCP-Users] HCP releasing EEG?

2015-08-27 Thread Jennifer Elam
Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362-9387 el...@pcg.wustl.edu www.humanconnectome.org From: hcp-users-boun

[HCP-Users] Additional Timing Issues with HCP Physiological Monitoring Data

2015-08-10 Thread Jennifer Elam
to beta test the raw physiological data by emailing e...@wustl.edu. Once again, we apologize to any investigators whose research has been impacted by this problem. Best, The WU-Minn HCP Consortium Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University

[HCP-Users] Windows version of Workbench v1.1.1 now up to date

2015-08-04 Thread Jennifer Elam
have the correct version. If what you see does not match this, then update Workbench to the version now available at: http://humanconnectome.org/software/get-connectome-workbench.html Best, The Connectome Workbench Development Team and the WU-Minn HCP Consortium Jennifer Elam, Ph.D

Re: [HCP-Users] prepare_level2_feat_analysis.sh

2015-07-27 Thread Jennifer Elam
Is it Connectome in a Box data? Which version do you have (when did you get it)? Or did you download an earlier version of the data from ConnectomeDB, or not get the task analysis packages? Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University

[HCP-Users] Connectome Workbench Bug fix update v1.1.1 Released

2015-07-24 Thread Jennifer Elam
Files before quitting Workbench, for later use. Best, The Workbench Developers and the WU-Minn HCP Consortium Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue

Re: [HCP-Users] Parcellations in cifti

2015-07-20 Thread Jennifer Elam
/100307.aparc.32k_fs_LR.dlabel.nii and {SubjectID}/MNINonLinear/fsaverage_LR32k/100307.aparc.a2009s.32k_fs_LR.dlabe l.nii Hope that's what you are looking for! Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department

Re: [HCP-Users] Tobacco use variables

2015-07-15 Thread Jennifer Elam
description. Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362-9387 el...@pcg.wustl.edu www.humanconnectome.org From: hcp

Re: [HCP-Users] Tobacco use variables

2015-07-15 Thread Jennifer Elam
smoker (3) We will correct this in the Data Dictionary and sorry for the confusion. Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St. Louis, MO

[HCP-Users] Connectome Workbench v1.1 Released!

2015-07-09 Thread Jennifer Elam
, bugs, and features can be posted to the hcp-users discussion list. Sign up for hcp-users at http://humanconnectome.org/contact/#subscribe Best, The WU-Minn HCP Consortium Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department

[HCP-Users] Netmats MegaTrawl Released

2015-04-29 Thread Jennifer Elam
://db.humanconnectome.org/data/projects/HCP_500#megatrawl and login when prompted. Full documentation on the NetmatsMegatrawl release is at https://db.humanconnectome.org/megatrawl/HCP500_MegaTrawl_April2015.pdf (requires login). Best, The WU-Minn HCP Consortium Jennifer Elam, Ph.D. Outreach

[HCP-Users] 4/18/15: HCP Data Server Move and Outage

2015-04-08 Thread Jennifer Elam
Consortium Informatics Team Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 tel:314-362-9387 314-362-9387 mailto:el...@pcg.wustl.edu el

Re: [HCP-Users] Discrepancy of number of subjects with complete dMRI datasets for download and those listed in the CSV file

2015-03-31 Thread Jennifer Elam
collected 6 dMRI scans for these subjects (the full HCP dMRI protocol, see Reference Manual for details), with all directions collected. Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy

[HCP-Users] humanconnectome.org SSL-certificate renewed

2015-03-02 Thread Jennifer Elam
or the HCP wiki . Thanks again for your patience! Best, The WU-Minn HCP Consortium Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 tel:314-362

Re: [HCP-Users] requirements for HCP pipeline?

2015-02-03 Thread Jennifer Elam
Hi Marta, As a reminder, there's also lots of good documentation on the pipelines at https://github.com/Washington-University/Pipelines/wiki/v3.4.0-Release-Notes ,-Installation,-and-Usage. Might be particularly useful for you methods write up. Best, Jenn Jennifer Elam, Ph.D. Outreach

Re: [HCP-Users] Course on the HCP pipelines?

2015-01-16 Thread Jennifer Elam
. Hope to see you in Hawaii!! Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362-9387 el...@pcg.wustl.edu

Re: [HCP-Users] Gradient nonlinearity correction (gradient coefficient file)

2015-01-15 Thread Jennifer Elam
obtained the coefficients by writing Dr. Wang, so I would do that. As Mike says, it would be nice if you reported back your experience to the list after you do this. Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine

Re: [HCP-Users] Accessing Freesurfer measurements via ConnectomeDB

2014-12-19 Thread Jennifer Elam
and Preprocessed filters selected. This package has all the intermediate FreeSurfer pipeline outputs in it and is 611GB for all 526 subjects with structural MRI data in the current release. Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University

Re: [HCP-Users] Course on the HCP pipelines?

2014-12-09 Thread Jennifer Elam
at the start of the year. If you or others have suggestions on more topics you'd like to be part of an HCP course, please let us know as this will help us prioritize based on user feedback. Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University

Re: [HCP-Users] 7T pipelines and protocols

2014-12-03 Thread Jennifer Elam
We are hoping to release full 7T documentation and 7T pipelines along with some 7T main HCP data in Spring 2015. Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660

[HCP-Users] Up-to-date HCP Resources

2014-12-02 Thread Jennifer Elam
Consortium Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 tel:314-362-9387 314-362-9387 mailto:el...@pcg.wustl.edu el...@pcg.wustl.edu http

Re: [HCP-Users] Documentation for 100 and 400+-subject group-average datasets

2014-12-01 Thread Jennifer Elam
for U100 mainly because of the extra effort it would take in the face of the many other HCP priorities. Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St

Re: [HCP-Users] Documentation for 100 and 400+-subject group-average datasets

2014-11-26 Thread Jennifer Elam
them more specifically. Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362-9387 el...@pcg.wustl.edu

[HCP-Users] ConnectomeDB outage

2014-10-27 Thread Jennifer Elam
inconvenience. Best, The WU-Minn HCP Team Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 tel:314-362-9387 314-362-9387 mailto:el

Re: [HCP-Users] Export workbench connectivity maps

2014-10-21 Thread Jennifer Elam
Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 tel:314-362-9387 314-362-9387 mailto:el...@pcg.wustl.edu el...@pcg.wustl.edu http

Re: [HCP-Users] [HCP-Info] [Contact Form]: Model free analysis methods for neuroimaging data (e.g. fMRI)

2014-10-21 Thread Jennifer Elam
us more about how you are doing your clustering so that we can give you the right commands to create the appropriate files? 4) See 1) I’m forwarding the thread to the list so that others there can confirm/add to the discussion. Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator

Re: [HCP-Users] Overlay and map settings: Color spectrum / palette

2014-10-15 Thread Jennifer Elam
section header (only applies to the selected layer). The section below the dropdown allows you to change the parameters of the selected Palette. See Overlay and Map Settings in Workbench Help (click ? icon in upper right of Workbench window) for more info. Best, Jenn Jennifer Elam, Ph.D. Outreach

Re: [HCP-Users] B-values for DWI data

2014-10-14 Thread Jennifer Elam
://www.mail-archive.com/hcp-users%40humanconnectome.org/msg00108.html Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362

[HCP-Users] FW: HCP Scripts

2014-10-14 Thread Jennifer Elam
Drive SW, Suite 225 Los Angeles, CA 90095-7334 310-206-2101 (Office) 310-206-5518 (Fax) 703-307-7692 (Cell) email: mailto:mica...@ucla.edu mica...@ucla.edu Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department

Re: [HCP-Users] deleting unnecessary files

2014-10-08 Thread Jennifer Elam
You can also cross check with the list of files that we distribute in our HCP preprocessed fMRI packages in the Reference Manual Appendix 3 http://humanconnectome.org/documentation/S500/HCP_S500_Release_Appendix_III .pdf . Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human

Re: [HCP-Users] [HCP-Info] [Contact Form]: about data

2014-10-01 Thread Jennifer Elam
recommend you look at Glasser http://www.sciencedirect.com/science/article/pii/S1053811913005053 et al. 2013 for more information on the diffusion and functional preprocessing. Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School

Re: [HCP-Users] [HCP-Info] [Contact Form]: solid or surface data

2014-09-30 Thread Jennifer Elam
asked about and will let you know if they come up with ideas. Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362-9387 el

Re: [HCP-Users] HCP Workbench installation

2014-09-19 Thread Jennifer Elam
Hi Bryan, We have updated the Connectome Workbench v1.0 Tutorial to clarify setting the variable path in the set up instructions. Thanks for the feedback! Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department

[HCP-Users] HCP Structural Extended Preprocessed package now available

2014-09-19 Thread Jennifer Elam
pipeline first on unprocessed data to generate the full output, or (2) add this package to the Structural Preprocessed package. Best, The WU-Minn HCP Consortium Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy

[HCP-Users] NIH Funding Opportunity on Connectomes Related to Human Disease

2014-07-31 Thread Jennifer Elam
://humanconnectome.org/resources/faq-disease-related-connectome-researc h.html . Best, The WU-Minn HCP Consortium Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St

Re: [HCP-Users] HCP protocols for GE and Philips 3T scanners

2014-07-28 Thread Jennifer Elam
generated on GE/Phillips systems. We recommend contacting your respective contact person at GE or Phillips to get connected with other customers who have implemented the pulse sequence and then you can contact CMRR for image reconstruction code. Best, Jenn Jennifer Elam, Ph.D. Outreach

Re: [HCP-Users] Map index of dense connectome matrix to name of brain region

2014-07-10 Thread Jennifer Elam
for that vertex (e.g. a label name) will also appear in the Info box. Using wb_command -nifti-information -print-xml you can get the full CIFTI XML that contains lists of the vertices within each label, which you can parse however you want. Best, Jenn Jennifer Elam, Ph.D. Outreach

Re: [HCP-Users] spatial smoothing of HCP ICA-FIX-Denoised rfMRI data

2014-07-09 Thread Jennifer Elam
Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362-9387 el...@pcg.wustl.edu www.humanconnectome.org From: hcp-users-boun

[HCP-Users] Intermittent orbitofrontal artifact in a limited number of HCP fMRI scans

2014-07-07 Thread Jennifer Elam
on the wiki. Best, WU-Minn HCP Consortium Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 tel:314-362-9387 314-362-9387 mailto:el

[HCP-Users] Link to S500 Reference Manual + see HCP at OHBM!

2014-06-09 Thread Jennifer Elam
It has come to our attention that there was a nonfunctional link to the 500 Subjects Release reference manual in the announcement email. Here is the correct link : http://humanconnectome.org/documentation/S500/index.html For those of you attending OHBM in Hamburg this week, set aside a few

Re: [HCP-Users] Questions about the behavioral data

2014-05-02 Thread Jennifer Elam
detailed info than what comes out of FreeSurfer, you can get it by working with the individual subjects imaging data, but someone else will have to give you advice on how best to do that. Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University

Re: [HCP-Users] Questions about the behavioral data

2014-05-01 Thread Jennifer Elam
access data without being concerned about heritability issues. Investigators must apply for restricted access http://humanconnectome.org/data/restricted-access/index.html to view the family structure of subjects in the database. Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human

Re: [HCP-Users] Individual item scores from NEO questionnaire

2014-05-01 Thread Jennifer Elam
Hi Chris, Your request has been added to the queue of items to be added to ConnectomeDB. We will keep you updated on the status of the ticket. Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy

[HCP-Users] Important preparations for the upcoming 500 Subjects data release

2014-04-23 Thread Jennifer Elam
hope you are looking forward to the release! Best, The WU-Minn HCP Consortium Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 tel:314-362

[HCP-Users] Upcoming changes to some HCP behavioral scores

2014-04-23 Thread Jennifer Elam
it before May 15, 2014. Please let us know if you have any questions (hcp-users@humanconnectome.org). Join the hcp-users list here http://humanconnectome.org/contact/#subscribe . We hope you are looking forward to the release! Best, The WU-Minn HCP Consortium Jennifer Elam, Ph.D

Re: [HCP-Users] High-resolution resting state networks available as template?

2014-04-18 Thread Jennifer Elam
Hi Matthias, If you are still interested in looking at a 7T rfMRI HCP publication, we do have this one from 2011 from HCP investigators at UMinn: http://dx.doi.org/10.1016/j.neuroimage.2011.05.008 There is much more to come from HCP at 7T, so stay tuned. Best, Jenn Jennifer Elam, Ph.D

Re: [HCP-Users] Workbench suddenly closes itself

2014-04-07 Thread Jennifer Elam
The latest version Workbench beta 0.85 release has not yet gone live, but is set to occur later today, hopefully by 5pm CDT. Look for the announcement, download the new version and check to see if the problem still occurs. Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human

[HCP-Users] Connectome Workbench v0.85 beta Released

2014-04-07 Thread Jennifer Elam
and elsewhere. Discussion of Connectome Workbench usage, bugs, and features can be posted to the hcp-users discussion list. Sign up for hcp-users at http://humanconnectome.org/contact/#subscribe Best, The WU-Minn HCP Consortium Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome

Re: [HCP-Users] NEOFFI version

2014-04-07 Thread Jennifer Elam
used in HCP see Barch http://www.sciencedirect.com/science/article/pii/S1053811913005272 et al. 2013 or the HCP Q3 Reference Manual http://humanconnectome.org/documentation/Q3/Q3_Release_Reference_Manual.pdf . Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project

Re: [HCP-Users] NEOFFI version

2014-04-07 Thread Jennifer Elam
Yes, we use the 2004 version of NEOFFI (5-factor) that is included in the UPenn Gur battery, due to the Gur battery’s wide use in other studies. Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy

Re: [HCP-Users] Ethics approval details

2014-02-25 Thread Jennifer Elam
data for their analyses for reporting on our grant. Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362-9387 el...@pcg.wustl.edu

[HCP-Users] Link to toolbox for multishell diffusion directions updated

2013-12-11 Thread Jennifer Elam
://www.emmanuelcaruyer.com/q-space-sampling.php Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 tel:314-362-9387 314-362-9387

[HCP-Users] HCP Connectome Workbench v0.84 beta Released

2013-11-21 Thread Jennifer Elam
of Connectome Workbench usage, bugs, and features can be posted to the hcp-users discussion list. Sign up for hcp-users at http://humanconnectome.org/contact/#subscribe Best, The WU-Minn HCP Consortium Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University

Re: [HCP-Users] [Processed Data: connectivity matrices]

2013-08-05 Thread Jennifer Elam
-compatible) head model available for each subject scanned using MEG. MEG data collection began this summer, and the first MEG data release is scheduled for the fall (November). Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School