Re: [HCP-Users] How to transform all subcortical values to 0 in a dscalar?

2017-10-09 Thread Timothy Coalson
connectome.org > *Subject:* Re: [HCP-Users] How to transform all subcortical values to 0 > in a dscalar? > > You can use -cifti-replace-structure with the -volume-all option and a > volume file of zeroes. If you have a lot of maps (or you want to do > something similar to a long dtseri

Re: [HCP-Users] How to transform all subcortical values to 0 in a dscalar?

2017-10-09 Thread Xavier Guell Paradis
tober 04, 2017 4:09 PM To: Xavier Guell Paradis Cc: hcp-users@humanconnectome.org Subject: Re: [HCP-Users] How to transform all subcortical values to 0 in a dscalar? You can use -cifti-replace-structure with the -volume-all option and a volume file of zeroes. If you have a lot of maps (or you wa

Re: [HCP-Users] How to transform all subcortical values to 0 in a dscalar?

2017-10-04 Thread Timothy Coalson
You can use -cifti-replace-structure with the -volume-all option and a volume file of zeroes. If you have a lot of maps (or you want to do something similar to a long dtseries), you can make a cifti file with 1's in the surfaces and 0's in voxels, and use -cifti-math to multiply them together. Fo

[HCP-Users] How to transform all subcortical values to 0 in a dscalar?

2017-10-04 Thread Xavier Guell Paradis
Dear HCP experts, I have a dscalar file with one map of cortical and subcortical data. I would like to transform all subcortical values to 0, and leave the cortical surface values intact. I have explored the -cifti-stats and -volume-stats options as well as -cifti-create-dense-scalar but cannot