Re: [HCP-Users] Transforming Freesurfer .mgz segmented files into HCP_2mm MNI Surface and Volume space

2019-02-01 Thread Glasser, Matthew
vast...@nyspi.columbia.edu>>, Matt Glasser mailto:glass...@wustl.edu>>, "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] Transforming Freesurfer .mgz segmented files into HCP_2m

Re: [HCP-Users] Transforming Freesurfer .mgz segmented files into HCP_2mm MNI Surface and Volume space

2019-02-01 Thread Harms, Michael
2019 at 4:40 PM To: "Harms, Michael" , "Glasser, Matthew" , "hcp-users@humanconnectome.org" Subject: Re: [HCP-Users] Transforming Freesurfer .mgz segmented files into HCP_2mm MNI Surface and Volume space Hi we just used the isotropic T1w scan A. Benjamin Sriva

Re: [HCP-Users] Transforming Freesurfer .mgz segmented files into HCP_2mm MNI Surface and Volume space

2019-01-30 Thread Srivastava, Benjamin (NYSPI)
2019 at 9:05 AM To: "Glasser, Matthew" , "Srivastava, Benjamin (NYSPI)" , "hcp-users@humanconnectome.org" Subject: Re: [HCP-Users] Transforming Freesurfer .mgz segmented files into HCP_2mm MNI Surface and Volume space ATTENTION: This email came from an external s

Re: [HCP-Users] Transforming Freesurfer .mgz segmented files into HCP_2mm MNI Surface and Volume space

2019-01-30 Thread Harms, Michael
asser, Matthew" Date: Tuesday, January 29, 2019 at 5:31 PM To: "Srivastava, Benjamin (NYSPI)" , "hcp-users@humanconnectome.org" Subject: Re: [HCP-Users] Transforming Freesurfer .mgz segmented files into HCP_2mm MNI Surface and Volume space As far as the vo

Re: [HCP-Users] Transforming Freesurfer .mgz segmented files into HCP_2mm MNI Surface and Volume space

2019-01-29 Thread Glasser, Matthew
amin (NYSPI)" mailto:benjamin.srivast...@nyspi.columbia.edu>> Date: Tuesday, January 29, 2019 at 1:56 PM To: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" mailto:hcp-users@humanconnectome.org>> Subject: [HCP-Users] Transforming Freesurfer .mgz segmente

[HCP-Users] Transforming Freesurfer .mgz segmented files into HCP_2mm MNI Surface and Volume space

2019-01-29 Thread Srivastava, Benjamin (NYSPI)
Hi, We have processed data using the 3_22 HCP Pipelines. We have run (successfully) the hippocampal amygdala segmentation script with Freesurfer 6 using segmentHA_T1.sh. We are now trying to transform the .mgz segmented files into the HCP_2mm MNI surface and volume spaces. Does anyone have any