Re: [HCP-Users] hp2000 filter not applied to hp2000_clean.nii.gz volume data for some (one?) subjects?

2019-04-23 Thread Glasser, Matthew
Also ReApplyFixMultiRunPipeline.sh is not affected at all by this bug. Matt. From: mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Matt Glasser mailto:glass...@wustl.edu>> Date: Tuesday, April 23, 2019 at 7:47 PM To: Timothy Coalson mailto:tsc...@mst.edu>>, "Harms, Michael"

Re: [HCP-Users] hp2000 filter not applied to hp2000_clean.nii.gz volume data for some (one?) subjects?

2019-04-23 Thread Glasser, Matthew
This is a bug affecting the use of ReApplyFix to re-clean data using a hand classification instead of the original FIX classification (and does not affect the use of ReApplyFix in MSMAll). It has been present since the release of ReApplyFix and will affect the volume data of all HCP-YA

Re: [HCP-Users] hp2000 filter not applied to hp2000_clean.nii.gz volume data for some (one?) subjects?

2019-04-23 Thread Timothy Coalson
Correction, the issue to follow is #107: https://github.com/Washington-University/HCPpipelines/issues/107 Tim On Tue, Apr 23, 2019 at 4:35 PM Harms, Michael wrote: > > > For users that want to follow this, please see: > > https://github.com/Washington-University/HCPpipelines/issues/108 > > >

Re: [HCP-Users] hp2000 filter not applied to hp2000_clean.nii.gz volume data for some (one?) subjects?

2019-04-23 Thread Harms, Michael
For users that want to follow this, please see: https://github.com/Washington-University/HCPpipelines/issues/108 It has something to do with the fact that we needed to apply manual reclassification of the FIX output in that particular subject/run. Cheers, -MH -- Michael Harms, Ph.D.