.@wustl.edu<mailto:glass...@wustl.edu>>,
"hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
<hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] values in myelin maps
thanks so much, it works and myeli
sser, Matthew" <glass...@wustl.edu>
> Date: Thursday, June 8, 2017 at 8:30 AM
> To: Lisa Kramarenko <lisa.kramare...@gmail.com>
> Cc: Michael Harms <mha...@wustl.edu>, "hcp-users@humanconnectome.org" <
> hcp-users@humanconnectome.org>
>
>
t;mailto:mha...@wustl.edu>>,
"hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
<hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] values in myelin maps
You could delete that or make the mkdir a condi
...@wustl.edu>>
Cc: "Harms, Michael" <mha...@wustl.edu<mailto:mha...@wustl.edu>>,
"hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
<hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users]
: Wednesday, June 7, 2017 at 12:50 PM
>> To: Matt Glasser <glass...@wustl.edu>, Lisa Kramarenko <
>> lisa.kramare...@gmail.com>
>>
>> Cc: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org>
>> Subject: Re: [HCP-Users] valu
gt;
> From: "Harms, Michael" <mha...@wustl.edu>
> Date: Wednesday, June 7, 2017 at 12:50 PM
> To: Matt Glasser <glass...@wustl.edu>, Lisa Kramarenko <
> lisa.kramare...@gmail.com>
>
> Cc: "hcp-users@humanconnectome.org" <hcp-users@humanconne
marenko <lisa.kramare...@gmail.com<mailto:lisa.kramare...@gmail.com>>
Cc: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
<hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] values in myelin m
edu>>
Cc: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
<hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] values in myelin maps
Hi Lisa,
I was going to suggest that you hack the pipeline yours
quot;hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
<hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] values in myelin maps
so that means if something went wrong with the skull strip and surfaces during
the FreeSur
> Kramarenko <lisa.kramare...@gmail.com>
> Date: Wednesday, June 7, 2017 at 11:00 AM
> To: "Glasser, Matthew" <glass...@wustl.edu>, "
> hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org>
>
> Subject: Re: [HCP-Users] values i
org>"
<hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] values in myelin maps
Dear Matthew,
I have now manually edited brainmask.gmz ans wm.gmz to remove dura that was
still mistaken for a surface. Now I am not sure from which step
gmail.com>
>> Date: Tuesday, May 30, 2017 at 9:31 AM
>>
>> To: Matt Glasser <glass...@wustl.edu>
>> Cc: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org>
>> Subject: Re: [HCP-Users] values in myelin maps
>>
>> do I find the
umanconnectome.org>"
<hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] values in myelin maps
do I find the files I should inspect in the {subject_id}/T1w/{subject_id}/mri/
folder?
On 30 May 2017 at 16:28, Lisa Kramarenko
<lis
of the brain as grey or white matter.
>
> Peace,
>
> Matt.
>
> From: Lisa Kramarenko <lisa.kramare...@gmail.com>
> Date: Tuesday, May 30, 2017 at 8:59 AM
>
> To: Matt Glasser <glass...@wustl.edu>
> Cc: "hcp-users@humanconnectome.org" <hcp-users@hu
asser <glass...@wustl.edu<mailto:glass...@wustl.edu>>
Cc: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
<hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] values in myelin maps
Alright, thanks
gt; Matt.
>>
>> From: Lisa Kramarenko <lisa.kramare...@gmail.com>
>> Date: Tuesday, May 30, 2017 at 7:53 AM
>> To: Matt Glasser <glass...@wustl.edu>
>> Cc: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org>
>> Subject: Re: [HCP-Users] v
umanconnectome.org>"
<hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] values in myelin maps
Yes, this is data of the lab I am in. I assume that I don't have fat saturation
as I have never heard about it before... If I understand co
t;
> Cc: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org>
> Subject: Re: [HCP-Users] values in myelin maps
>
> Thanks!
> Another question I have concerning myelin maps is the following: when I
> was doing quality control I noticed that some of them look rather weird
me.org>>
on behalf of Lisa Kramarenko
<lisa.kramare...@gmail.com<mailto:lisa.kramare...@gmail.com>>
Date: Monday, May 29, 2017 at 5:29 AM
To: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
<hcp-users@humanconnectome.org<mailto:hcp-users@hum
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