Re: [HCP-Users] what is rfMRI_REST1_LR_Atlas.dtseries.nii
For a “recommended” analysis the only timeseries file you need is
${StudyFolder}/${Subject}/MNINonLinear/Results/${fMRIName}/${fMRIName}_Atlas_MSMAll_hp2000_clean.dtseries.nii.
Peace,
Matt.
From: "Harms, Michael" <mha...@wustl.edu<mailto:mha...@wustl.edu>>
Date: Friday, February 23, 2018 at 9:47 AM
To: redhatw <redh...@gmail.com<mailto:redh...@gmail.com>>
Cc: Matt Glasser <glass...@wustl.edu<mailto:glass...@wustl.edu>>,
"hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
<hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] what is rfMRI_REST1_LR_Atlas.dtseries.nii
The FIX cleaned files have “clean” in their file name.
--
Michael Harms, Ph.D.
---
Conte Center for the Neuroscience of Mental Disorders
Washington University School of Medicine
Department of Psychiatry, Box 8134
660 South Euclid Ave.Tel: 314-747-6173
St. Louis, MO 63110 Email:
mha...@wustl.edu<mailto:mha...@wustl.edu>
From: redhatw <redh...@gmail.com<mailto:redh...@gmail.com>>
Date: Friday, February 23, 2018 at 9:37 AM
To: "Harms, Michael" <mha...@wustl.edu<mailto:mha...@wustl.edu>>
Cc: "Glasser, Matthew" <glass...@wustl.edu<mailto:glass...@wustl.edu>>,
"hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
<hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] what is rfMRI_REST1_LR_Atlas.dtseries.nii
Was the MSMAll one cleaned?
Thanks
Ze
On Fri, Feb 23, 2018 at 9:43 AM, Harms, Michael
<mha...@wustl.edu<mailto:mha...@wustl.edu>> wrote:
I guess, if you never plan on using the MSMSulc registered output from the
preprocessing output. But the CIFTI files are small compared to the volume
files, so I wouldn’t. Also, if you haven’t already cleaned the data (using
FIX), you’ll need that file.
--
Michael Harms, Ph.D.
---
Conte Center for the Neuroscience of Mental Disorders
Washington University School of Medicine
Department of Psychiatry, Box 8134
660 South Euclid
Ave<https://maps.google.com/?q=660+South+Euclid+Ave=gmail=g>.
Tel: 314-747-6173<tel:(314)%20747-6173>
St. Louis, MO 63110 Email:
mha...@wustl.edu<mailto:mha...@wustl.edu>
From: redhatw <redh...@gmail.com<mailto:redh...@gmail.com>>
Date: Friday, February 23, 2018 at 8:03 AM
To: "Glasser, Matthew" <glass...@wustl.edu<mailto:glass...@wustl.edu>>
Cc: "Harms, Michael" <mha...@wustl.edu<mailto:mha...@wustl.edu>>,
"hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
<hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] what is rfMRI_REST1_LR_Atlas.dtseries.nii
Thanks Michael and Matt. Does that mean I can delete
rfMRI_REST1_LR_Atlas.dtseries.nii to save some space?
Ze
On Thu, Feb 22, 2018 at 7:18 PM, Glasser, Matthew
<glass...@wustl.edu<mailto:glass...@wustl.edu>> wrote:
These are both aligned to the FS_LR spherical surface geographic convention.
Peace,
Matt.
From:
<hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org>>
on behalf of "Harms, Michael" <mha...@wustl.edu<mailto:mha...@wustl.edu>>
Date: Thursday, February 22, 2018 at 3:54 PM
To: redhatw <redh...@gmail.com<mailto:redh...@gmail.com>>,
"hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
<hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] what is rfMRI_REST1_LR_Atlas.dtseries.nii
The files without any “registration suffix” came first temporally and were
generated using “MSMSulc” registration. When the “MSMAll” registration was
added later, we then added “MSMAll” as part of the file name.
Cheers,
-MH
--
Michael Harms, Ph.D.
---
Conte Center for the Neuroscience of Mental Disorders
Washington University School of Medicine
Department of Psychiatry, Box 8134
660 South Euclid
Ave<https://maps.google.com/?q=660+South+Euclid+Ave=gmail=g>.
Tel: 314-747-6173<tel:(314)%20747-6173>
St. Louis, MO 63110 Email:
mha...@wustl.edu<mailto:mha...@wustl.edu>
From:
<hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org>>
on behalf of redhatw <redh...@gmail.com<mailto:redh...@gmail.com>>
Date: Thursday, February 22, 2018 at 2:06 PM
To: "hcp-users@humanconnectom
Re: [HCP-Users] what is rfMRI_REST1_LR_Atlas.dtseries.nii
The FIX cleaned files have “clean” in their file name. -- Michael Harms, Ph.D. --- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave.Tel: 314-747-6173 St. Louis, MO 63110 Email: mha...@wustl.edu From: redhatw <redh...@gmail.com> Date: Friday, February 23, 2018 at 9:37 AM To: "Harms, Michael" <mha...@wustl.edu> Cc: "Glasser, Matthew" <glass...@wustl.edu>, "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: Re: [HCP-Users] what is rfMRI_REST1_LR_Atlas.dtseries.nii Was the MSMAll one cleaned? Thanks Ze On Fri, Feb 23, 2018 at 9:43 AM, Harms, Michael <mha...@wustl.edu<mailto:mha...@wustl.edu>> wrote: I guess, if you never plan on using the MSMSulc registered output from the preprocessing output. But the CIFTI files are small compared to the volume files, so I wouldn’t. Also, if you haven’t already cleaned the data (using FIX), you’ll need that file. -- Michael Harms, Ph.D. --- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave<https://maps.google.com/?q=660+South+Euclid+Ave=gmail=g>. Tel: 314-747-6173<tel:(314)%20747-6173> St. Louis, MO 63110 Email: mha...@wustl.edu<mailto:mha...@wustl.edu> From: redhatw <redh...@gmail.com<mailto:redh...@gmail.com>> Date: Friday, February 23, 2018 at 8:03 AM To: "Glasser, Matthew" <glass...@wustl.edu<mailto:glass...@wustl.edu>> Cc: "Harms, Michael" <mha...@wustl.edu<mailto:mha...@wustl.edu>>, "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] what is rfMRI_REST1_LR_Atlas.dtseries.nii Thanks Michael and Matt. Does that mean I can delete rfMRI_REST1_LR_Atlas.dtseries.nii to save some space? Ze On Thu, Feb 22, 2018 at 7:18 PM, Glasser, Matthew <glass...@wustl.edu<mailto:glass...@wustl.edu>> wrote: These are both aligned to the FS_LR spherical surface geographic convention. Peace, Matt. From: <hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org>> on behalf of "Harms, Michael" <mha...@wustl.edu<mailto:mha...@wustl.edu>> Date: Thursday, February 22, 2018 at 3:54 PM To: redhatw <redh...@gmail.com<mailto:redh...@gmail.com>>, "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] what is rfMRI_REST1_LR_Atlas.dtseries.nii The files without any “registration suffix” came first temporally and were generated using “MSMSulc” registration. When the “MSMAll” registration was added later, we then added “MSMAll” as part of the file name. Cheers, -MH -- Michael Harms, Ph.D. --- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave<https://maps.google.com/?q=660+South+Euclid+Ave=gmail=g>. Tel: 314-747-6173<tel:(314)%20747-6173> St. Louis, MO 63110 Email: mha...@wustl.edu<mailto:mha...@wustl.edu> From: <hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org>> on behalf of redhatw <redh...@gmail.com<mailto:redh...@gmail.com>> Date: Thursday, February 22, 2018 at 2:06 PM To: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: [HCP-Users] what is rfMRI_REST1_LR_Atlas.dtseries.nii Dear HCPers, In the preprocessed data, I found two dtseries data. What is rfMRI_REST1_LR_Atlas.dtseries.nii? does it differ from rfMRI_REST1_LR_Atlas_MSMall.dtseries.nii only by the MSM align method? Which atlas it is based? Sorry I couldn't find details in the documents. thanks Ze ___ HCP-Users mailing list HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org> http://lists.humanconnectome.org/mailman/listinfo/hcp-users The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that
Re: [HCP-Users] what is rfMRI_REST1_LR_Atlas.dtseries.nii
Was the MSMAll one cleaned? Thanks Ze On Fri, Feb 23, 2018 at 9:43 AM, Harms, Michael <mha...@wustl.edu> wrote: > I guess, if you never plan on using the MSMSulc registered output from the > preprocessing output. But the CIFTI files are small compared to the volume > files, so I wouldn’t. Also, if you haven’t already cleaned the data (using > FIX), you’ll need that file. > > > > -- > > Michael Harms, Ph.D. > > --- > > Conte Center for the Neuroscience of Mental Disorders > > Washington University School of Medicine > > Department of Psychiatry, Box 8134 > > 660 South Euclid Ave > <https://maps.google.com/?q=660+South+Euclid+Ave=gmail=g>. > Tel: 314-747-6173 <(314)%20747-6173> > > St. Louis, MO 63110 Email: > mha...@wustl.edu > > > > *From: *redhatw <redh...@gmail.com> > *Date: *Friday, February 23, 2018 at 8:03 AM > *To: *"Glasser, Matthew" <glass...@wustl.edu> > *Cc: *"Harms, Michael" <mha...@wustl.edu>, "hcp-users@humanconnectome.org" > <hcp-users@humanconnectome.org> > > *Subject: *Re: [HCP-Users] what is rfMRI_REST1_LR_Atlas.dtseries.nii > > > > Thanks Michael and Matt. Does that mean I can delete > rfMRI_REST1_LR_Atlas.dtseries.nii to save some space? > > Ze > > > > On Thu, Feb 22, 2018 at 7:18 PM, Glasser, Matthew <glass...@wustl.edu> > wrote: > > These are both aligned to the FS_LR spherical surface geographic > convention. > > > > Peace, > > > > Matt. > > > > *From: *<hcp-users-boun...@humanconnectome.org> on behalf of "Harms, > Michael" <mha...@wustl.edu> > *Date: *Thursday, February 22, 2018 at 3:54 PM > *To: *redhatw <redh...@gmail.com>, "hcp-users@humanconnectome.org" < > hcp-users@humanconnectome.org> > *Subject: *Re: [HCP-Users] what is rfMRI_REST1_LR_Atlas.dtseries.nii > > > > > > The files without any “registration suffix” came first temporally and were > generated using “MSMSulc” registration. When the “MSMAll” registration was > added later, we then added “MSMAll” as part of the file name. > > > > Cheers, > > -MH > > > > -- > > Michael Harms, Ph.D. > > --- > > Conte Center for the Neuroscience of Mental Disorders > > Washington University School of Medicine > > Department of Psychiatry, Box 8134 > > 660 South Euclid Ave > <https://maps.google.com/?q=660+South+Euclid+Ave=gmail=g>. > Tel: 314-747-6173 <(314)%20747-6173> > > St. Louis, MO 63110 Email: > mha...@wustl.edu > > > > *From: *<hcp-users-boun...@humanconnectome.org> on behalf of redhatw < > redh...@gmail.com> > *Date: *Thursday, February 22, 2018 at 2:06 PM > *To: *"hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> > *Subject: *[HCP-Users] what is rfMRI_REST1_LR_Atlas.dtseries.nii > > > > Dear HCPers, > > In the preprocessed data, I found two dtseries data. What is > rfMRI_REST1_LR_Atlas.dtseries.nii? does it differ from > rfMRI_REST1_LR_Atlas_MSMall.dtseries.nii only by the MSM align method? > Which atlas it is based? > > Sorry I couldn't find details in the documents. > > thanks > > Ze > > ___ > HCP-Users mailing list > HCP-Users@humanconnectome.org > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > -- > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you > are not the intended recipient, be advised that any unauthorized use, > disclosure, copying or the taking of any action in reliance on the contents > of this information is strictly prohibited. If you have received this email > in error, please immediately notify the sender via telephone or return mail. > > ___ > HCP-Users mailing list > HCP-Users@humanconnectome.org > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > > > -- > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you > are not the intended recipient, be advised that any unauthorized use, > disclosure, copying or the taking of any action in reliance on the contents > of this information is strictly prohibited. If you have received this email > in error, please immediately notify the sender via telephone or return mail. > ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
Re: [HCP-Users] what is rfMRI_REST1_LR_Atlas.dtseries.nii
I guess, if you never plan on using the MSMSulc registered output from the preprocessing output. But the CIFTI files are small compared to the volume files, so I wouldn’t. Also, if you haven’t already cleaned the data (using FIX), you’ll need that file. -- Michael Harms, Ph.D. --- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave.Tel: 314-747-6173 St. Louis, MO 63110 Email: mha...@wustl.edu From: redhatw <redh...@gmail.com> Date: Friday, February 23, 2018 at 8:03 AM To: "Glasser, Matthew" <glass...@wustl.edu> Cc: "Harms, Michael" <mha...@wustl.edu>, "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: Re: [HCP-Users] what is rfMRI_REST1_LR_Atlas.dtseries.nii Thanks Michael and Matt. Does that mean I can delete rfMRI_REST1_LR_Atlas.dtseries.nii to save some space? Ze On Thu, Feb 22, 2018 at 7:18 PM, Glasser, Matthew <glass...@wustl.edu<mailto:glass...@wustl.edu>> wrote: These are both aligned to the FS_LR spherical surface geographic convention. Peace, Matt. From: <hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org>> on behalf of "Harms, Michael" <mha...@wustl.edu<mailto:mha...@wustl.edu>> Date: Thursday, February 22, 2018 at 3:54 PM To: redhatw <redh...@gmail.com<mailto:redh...@gmail.com>>, "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] what is rfMRI_REST1_LR_Atlas.dtseries.nii The files without any “registration suffix” came first temporally and were generated using “MSMSulc” registration. When the “MSMAll” registration was added later, we then added “MSMAll” as part of the file name. Cheers, -MH -- Michael Harms, Ph.D. --- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave<https://maps.google.com/?q=660+South+Euclid+Ave=gmail=g>. Tel: 314-747-6173<tel:(314)%20747-6173> St. Louis, MO 63110 Email: mha...@wustl.edu<mailto:mha...@wustl.edu> From: <hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org>> on behalf of redhatw <redh...@gmail.com<mailto:redh...@gmail.com>> Date: Thursday, February 22, 2018 at 2:06 PM To: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: [HCP-Users] what is rfMRI_REST1_LR_Atlas.dtseries.nii Dear HCPers, In the preprocessed data, I found two dtseries data. What is rfMRI_REST1_LR_Atlas.dtseries.nii? does it differ from rfMRI_REST1_LR_Atlas_MSMall.dtseries.nii only by the MSM align method? Which atlas it is based? Sorry I couldn't find details in the documents. thanks Ze ___ HCP-Users mailing list HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org> http://lists.humanconnectome.org/mailman/listinfo/hcp-users The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. ___ HCP-Users mailing list HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org> http://lists.humanconnectome.org/mailman/listinfo/hcp-users The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
Re: [HCP-Users] what is rfMRI_REST1_LR_Atlas.dtseries.nii
Thanks Michael and Matt. Does that mean I can delete rfMRI_REST1_LR_Atlas.dtseries.nii to save some space? Ze On Thu, Feb 22, 2018 at 7:18 PM, Glasser, Matthew <glass...@wustl.edu> wrote: > These are both aligned to the FS_LR spherical surface geographic > convention. > > Peace, > > Matt. > > From: <hcp-users-boun...@humanconnectome.org> on behalf of "Harms, > Michael" <mha...@wustl.edu> > Date: Thursday, February 22, 2018 at 3:54 PM > To: redhatw <redh...@gmail.com>, "hcp-users@humanconnectome.org" < > hcp-users@humanconnectome.org> > Subject: Re: [HCP-Users] what is rfMRI_REST1_LR_Atlas.dtseries.nii > > > > The files without any “registration suffix” came first temporally and were > generated using “MSMSulc” registration. When the “MSMAll” registration was > added later, we then added “MSMAll” as part of the file name. > > > > Cheers, > > -MH > > > > -- > > Michael Harms, Ph.D. > > --- > > Conte Center for the Neuroscience of Mental Disorders > > Washington University School of Medicine > > Department of Psychiatry, Box 8134 > > 660 South Euclid Ave > <https://maps.google.com/?q=660+South+Euclid+Ave=gmail=g>. > Tel: 314-747-6173 <(314)%20747-6173> > > St. Louis, MO 63110 Email: > mha...@wustl.edu > > > > *From: *<hcp-users-boun...@humanconnectome.org> on behalf of redhatw < > redh...@gmail.com> > *Date: *Thursday, February 22, 2018 at 2:06 PM > *To: *"hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> > *Subject: *[HCP-Users] what is rfMRI_REST1_LR_Atlas.dtseries.nii > > > > Dear HCPers, > > In the preprocessed data, I found two dtseries data. What is > rfMRI_REST1_LR_Atlas.dtseries.nii? does it differ from > rfMRI_REST1_LR_Atlas_MSMall.dtseries.nii only by the MSM align method? > Which atlas it is based? > > Sorry I couldn't find details in the documents. > > thanks > > Ze > > ___ > HCP-Users mailing list > HCP-Users@humanconnectome.org > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > -- > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you > are not the intended recipient, be advised that any unauthorized use, > disclosure, copying or the taking of any action in reliance on the contents > of this information is strictly prohibited. If you have received this email > in error, please immediately notify the sender via telephone or return mail. > > ___ > HCP-Users mailing list > HCP-Users@humanconnectome.org > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
Re: [HCP-Users] what is rfMRI_REST1_LR_Atlas.dtseries.nii
The files without any “registration suffix” came first temporally and were generated using “MSMSulc” registration. When the “MSMAll” registration was added later, we then added “MSMAll” as part of the file name. Cheers, -MH -- Michael Harms, Ph.D. --- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave.Tel: 314-747-6173 St. Louis, MO 63110 Email: mha...@wustl.edu From: <hcp-users-boun...@humanconnectome.org> on behalf of redhatw <redh...@gmail.com> Date: Thursday, February 22, 2018 at 2:06 PM To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: [HCP-Users] what is rfMRI_REST1_LR_Atlas.dtseries.nii Dear HCPers, In the preprocessed data, I found two dtseries data. What is rfMRI_REST1_LR_Atlas.dtseries.nii? does it differ from rfMRI_REST1_LR_Atlas_MSMall.dtseries.nii only by the MSM align method? Which atlas it is based? Sorry I couldn't find details in the documents. thanks Ze ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
