Re: [HCP-Users] How can I convert subcortical nifti files to dlabel files?

2017-08-10 Thread Xavier Guell Paradis
...@mst.edu] Sent: Wednesday, August 09, 2017 6:55 PM To: Xavier Guell Paradis Cc: Glasser, Matthew; hcp-users@humanconnectome.org Subject: Re: [HCP-Users] How can I convert subcortical nifti files to dlabel files? If your "mycluster.nii" is in a different volume space than 222 MNI

Re: [HCP-Users] How can I convert subcortical nifti files to dlabel files?

2017-08-09 Thread Timothy Coalson
- > *From:* Timothy Coalson [tsc...@mst.edu] > *Sent:* Wednesday, August 09, 2017 4:57 PM > *To:* Xavier Guell Paradis > *Cc:* Glasser, Matthew; hcp-users@humanconnectome.org > > *Subject:* Re: [HCP-Users] How can I convert subcortical nifti files to > dlabel files? &g

Re: [HCP-Users] How can I convert subcortical nifti files to dlabel files?

2017-08-09 Thread Xavier Guell Paradis
Timothy Coalson [tsc...@mst.edu] Sent: Wednesday, August 09, 2017 4:57 PM To: Xavier Guell Paradis Cc: Glasser, Matthew; hcp-users@humanconnectome.org Subject: Re: [HCP-Users] How can I convert subcortical nifti files to dlabel files? You need to have a dtseries (or dconn) file open before you can

Re: [HCP-Users] How can I convert subcortical nifti files to dlabel files?

2017-08-09 Thread Timothy Coalson
; file, I can see it listed in the "Labels" list of the "Features ToolBox". > > Thank you very much, > Xavier. > -- > *From:* Glasser, Matthew [glass...@wustl.edu] > *Sent:* Wednesday, August 09, 2017 2:13 PM > *To:* Xavier Guell Paradis; NEUROSCIENCE tim > >

Re: [HCP-Users] How can I convert subcortical nifti files to dlabel files?

2017-08-09 Thread Xavier Guell Paradis
PM To: Xavier Guell Paradis; NEUROSCIENCE tim Cc: hcp-users@humanconnectome.org Subject: Re: [HCP-Users] How can I convert subcortical nifti files to dlabel files? It should work if you skip the last step and use the dlabel file. Peace, Matt. From: Xavier Guell Paradis <xavie...@mit.edu<ma

Re: [HCP-Users] How can I convert subcortical nifti files to dlabel files?

2017-08-09 Thread Glasser, Matthew
ser <glass...@wustl.edu<mailto:glass...@wustl.edu>> Cc: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: RE: [HCP-Users] How can I convert subcortical nifti files to

Re: [HCP-Users] How can I convert subcortical nifti files to dlabel files?

2017-08-09 Thread Xavier Guell Paradis
option of "Show Data/Time Series Graph" but not the option of "Show Cifti Connectivity". Thank you very much, Xavier. From: Timothy Coalson [tsc...@mst.edu] Sent: Tuesday, August 08, 2017 4:39 PM To: Xavier Guell Paradis Cc: hcp-users@humanc

Re: [HCP-Users] How can I convert subcortical nifti files to dlabel files?

2017-08-08 Thread Timothy Coalson
I'm assuming you want them to match a standard grayordinate space, so that they can be compared across subjects. The simple way that doesn't account for residual subject differences in subcortical locations is to first resample the data to the appropriate resolution/orientation MNI space (222 for

Re: [HCP-Users] How can I convert subcortical nifti files to dlabel files?

2017-08-08 Thread Glasser, Matthew
wb_command -cifti-create-dense-scalar and then wb_command -cifti-label-import with an appropriate label tabel. Alternatively, wb_command -volume-label-import and wb_command -cifti-create-label. Peace, Matt. From: