[HCP-Users] Fwd: how to map cortical thickness data to 180 parcellation (Glasser et al, Nature)

2016-10-18 Thread YC Yao
> 下面是被转发的邮件: > > 发件人: YC Yao > 主题: 回复: [HCP-Users] how to map cortical thickness data to 180 parcellation > (Glasser et al, Nature) > 日期: 2016年10月18日 GMT+8 18:57:22 > 收件人: Timothy Coalson , mha...@wustl.edu > > Dear Tim and Michael Harms, > > Thank

Re: [HCP-Users] Extracting beta values from analyzed task-data

2016-10-18 Thread Vadim Axelrod
Hi Micahel and all, I am sorry to bother you again, but as a follow-up of you last remark, I feel that I am confused about the way the baseline is treated: 1. How contrast and beta map can be the same thing? For example, let's take Social cognition exp. At the first (or second) level there

Re: [HCP-Users] Extracting beta values from analyzed task-data

2016-10-18 Thread Harms, Michael
Hi, The fixation blocks establish the implicit baseline. There is no beta map for fixation. cheers, -MH -- Michael Harms, Ph.D. --- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department

[HCP-Users] mounting the HCP data on an ec2 isntance instead of s3 access

2016-10-18 Thread Denis-Alexander Engemann
Dear HCPers, I recently had a conversation with Robert who suggested to me that it should be possible to directly mount the HCP data like an EBS volume instead of using the s3 tools for copying the data file by file. Any hint would be appreciated. Cheers, Denis

Re: [HCP-Users] Fwd: how to map cortical thickness data to 180 parcellation (Glasser et al, Nature)

2016-10-18 Thread Timothy Coalson
The options to these commands aren't subcommands, they just provide input data or modify the details of how the command works. For -cifti-create-dense-from-template, you can use the dlabel file as the template (since you only plan to parcellate the data, it isn't critical to match them to the

[HCP-Users] HCP pipelines with FreeSurfer longitudinal stream?

2016-10-18 Thread Antonin Skoch
Dear experts, I am considering the best option how to process the structural MRI data of our longitudinal study. We have patients and controls, each subject was scanned twice. Our data meet the requirements of HCP pipelines which I would prefer to use. On the other hand, in FreeSurfer there

Re: [HCP-Users] A question about 164k data

2016-10-18 Thread Glasser, Matthew
You could use wb_command -cifti-resample with the native mesh non-BC myelin maps and the MSMAll deformed spheres. It will be a single, but long command. Peace, Matt. From: > on behalf of Aaron C