Dear all,
Is this post still valid re: cifti in matlab?
https://wiki.humanconnectome.org/display/PublicData/HCP+Users+FAQ#HCPUsersFAQ-2.HowdoyougetCIFTIfilesintoMATLAB?
Is cifti-matlab still only recommended for MEG data?
https://github.com/Washington-University/cifti-matlab
Claude
Hi all,
I am starting a new thread because while my question is related to the one ask,
it is tangential.
Can I confirm that what you mean by not averaging surfaces is that one should not average
the vertex points across gifti surfaces to create a so-called "average surface"
Can I ask then,
gistration in this
case (eg the ${subject}.${side}.32k_fs_LR.surf.gii files over the MSMAll)?
Claude
On 03.08.2017 21:46, Timothy Coalson wrote:
On Thu, Aug 3, 2017 at 9:03 AM, Claude Bajada <c.baj...@fz-juelich.de
<mailto:c.baj...@fz-juelich.de>> wrote:
Hi all,
I am startin
the parts of tractography
that aren’t biased by folding. I would do your mapping in individual
subjects.
Peace,
Matt.
From: <hcp-users-boun...@humanconnectome.org
<mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Claude
Bajada <c.baj...@fz-juelich.de <mailto:c.baj...@fz-
Forwarded Message
> Subject: Re: [HCP-Users] Flat Maps
> Date: Thu, 13 Jul 2017 16:36:12 -0500
> From: David Van Essen <vanes...@wustl.edu>
> To: Claude Bajada <c.baj...@fz-juelich.de>, hcp-users
> <hcp-users@humanconnectome.org>
>
>
Dear all,
I have a two questions about the surfaces that live in the HCP data folders:
1. MNINonLinear/fsaverage/
2. T1w/fsaverageLR32k/
If I have understood the minimal pipeline correctly:
1. all the surfaces in MNINonLinear/fsaverage32k/ are the individual's
surface that was warped
ation?
Regards,
Claude
On 24.07.2017 22:38, Timothy Coalson wrote:
On Mon, Jul 24, 2017 at 8:40 AM, Claude Bajada <c.baj...@fz-juelich.de
<mailto:c.baj...@fz-juelich.de>> wrote:
Dear all,
I have a two questions about the surfaces that live in the HCP
data f
subtract 1 and multiply by -1
> to get a medial wall ROI with ones inside the ROI and zeros for the
> cortex.
>
> Peace,
>
> Matt.
>
> On 8/18/17, 8:55 AM, "hcp-users-boun...@humanconnectome.org on behalf of
> Claude Bajada" <hcp-users-boun...@humanconnectome.
Hi all,
I had asked a question on this forum a while ago related to medial wall
structures in cifti and gifti files and I have a follow-up question.
I have been going through the gifti file format and have learned that
the medial wall structures are labeled as ???
Unfortunately, it seems that
Hello all,
Are there any canonical resting state network masks available for the
MSMAll 32k HCP surfaces as a gifti or cifti file? If so, where can I
obtain them?
Claude
Dear all,
I have a question about some scores on the restricted data. I don't
think that I'd be divulging anything in particular but just to be safe,
is there a restricted mailing list or a specific person I can send the
question to in order to be sure not to break any terms?
Regards,
Claude
Dear all,
What is the wb_command syntax to label map names?
[cid:part1.24ABD659.153881EE@fz-juelich.de]
Regards,
Claude
Dear experts,
I have a few questions:
1) I am currently working on a project using tractography and the HCP
data. I have used the HCP provided FNIRT based MNI registration in order
to register individual streamlines from "native" or diffusion space (as
per post HCP minimal processing pipeline)
Hi Tim,
Thank you very much for your detailed explanation
Regards,
Claude
On it-Tnejn, 02 ta Lul, 2018 07:35 , Timothy Coalson wrote:
On Mon, Jul 2, 2018 at 7:13 AM, Claude Bajada
mailto:c.baj...@fz-juelich.de>> wrote:
2) from what I understand, structural qualities such as co
Thanks very much Jenn,
Found them and downloaded them. I just have one more question. I am now
trying to do some analysis on a subset of the individual myelin maps
(S1200.All.MyelinMap...). I have loaded the data into matlab but this
just gives a [vertex x participant] matrix but none of the
ed, Feb 21, 2018 at 3:24 AM, Claude Bajada <c.baj...@fz-juelich.de
<mailto:c.baj...@fz-juelich.de>> wrote:
Dear all,
I would like to perform tractography seeding from the thalamus. So
as to
ensure that I have correspondence between individuals, I would like to
us
Thanks
On il-Ħamis, 22 ta Fra, 2018 12:41 , Glasser, Matthew wrote:
They are in ${StudyFolder}/${Subject}/MNINonLinear/xfms
Peace,
Matt.
From: <hcp-users-boun...@humanconnectome.org
<mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Claude
Bajada <c.baj..
Hi all,
I am encountering a problem when trying to create a scene with wb_view. As soon
as I try to add my scene I get a core dump:
[cid:part1.C307F21E.5B1978C7@fz-juelich.de]
Anyone has a similar problem and know a solution?
Claude
apologies Ubuntu 16.04 LTS installed from the neurodebian repo
On l-Erbgħa, 07 ta Mar, 2018 02:44 , Glasser, Matthew wrote:
What OS is this on?
Peace,
Matt.
From: <hcp-users-boun...@humanconnectome.org
<mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Claude
Bajada
ing the More button). Qt 5 provides
better support for the XCB libraries.
John Harwell
On Mar 7, 2018, at 7:46 AM, Claude Bajada <c.baj...@fz-juelich.de
<mailto:c.baj...@fz-juelich.de>> wrote:
apologies Ubuntu 16.04 LTS installed from the neurodebian repo
On l-Erbgħa, 07 ta
Thanks for your reply Tim, by "least pairing an LR with an RL" I assume
you mean concatenate the time series, correct?
Claude
On 22/03/2019 19:19, Timothy Coalson wrote:
Inline replies.
Tim
On Fri, Mar 22, 2019 at 10:17 AM Claude Bajada <mailto:c.baj...@fz-juelich.de>>
Dear experts,
Could I just confirm that the data that is found in:
${SubjectFolder}/MNINinLinear/Results/rfMRI_REST?_LR/rfMRI_REST?_LR_Atlas_MSMAll_hp2000_clean.dtseries.nii
Is the resting state data using the MSMall aligned vertex coordinates
and that these data can be used to then produce
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