Dear HCP teams,
I am extracting signals from individual level-2 analysis , and I wonder what is
the value of file end with dscalar.nii (e.g.,
100307_tfMRI_WM_level2_hp200_s2.dscalar.nii) . Is it z value ? I can't find
that in manual.
Regards,
Qinqin lee
_
Dear HCP teams,
I am trying to threshold surface data of file *.dscalar.nii , and after that, I
don't know how to link data remains in the matrix with its space coordinates.
Is there any matrix contains the information linking vertex index in the matrix
with its space location? If there is suc
can I find it.
Thanks again,
Qinqin lee
On 03/20/2017 20:03，Glasser, Matthew wrote：
In individual subjects, you can use the midthickness surface coordinates as the
3D coordinates.
Peace,
Matt.
From: on behalf of Irisqql0922
Date: Monday, March 20, 2017 at 4:19 AM
To: hcp-users
Su
look here and consider whether this command might help:
https://www.humanconnectome.org/documentation/workbench-command/command-all-commands-help.html
-cifti-rois-from-extrema
You might have to manipulate your ROI to narrow it down first.
Donna
> On Mar 20, 2017, at 7:23 AM, Irisqql0922 wr
/nipy/nibabel
Tim
On Mon, Mar 20, 2017 at 8:39 AM, Irisqql0922 wrote:
Sorry, I thought Matt misunderstanding my words. Ok, I will check the file
*midthickness*.sur.gii.
Thank you Donna, and thank you Matt^_^
Qinqin Lee
On 03/20/2017 21:25，Dierker, Donna wrote：
Hi Qinqin,
As Matt said
Dear HCP teams,
I need parameters concerning head motion(e.g., FD) to do my task fMRI analyse
and data about subjects' brain size to analyze structure data now (they will
both be used in regression).
So I wonder is there any file on AWS or connectome DB include these information
(I cannot f
Dear HCP teams,
I notice that you have run CIA-FIX denoise process for rfMRI data, but it
seems like there is no such process for task fMRI.
Now I am working on WM data and want to find related SNR data to do some
further analyse. So I wonder if there is any file containing SNR value
(verte
Dear HCP teams,
I am now trying to use Amazon S3 on NITRC-CE, and I stucked with mounting
data from hcp-openaccess bucket to my instance. After I filled in blanks, the
system told me I had mount it successfully. But when I check the folder though
terminal, it shows nothing below.
I
minal like "sudo mount
/s3mnt" and see what error you get. You may have entered the authentication
incorrectly, or requested a new authentication token, but then entered the old,
expired one.
Tim
On Tue, May 9, 2017 at 2:12 AM, Irisqql0922 wrote:
Dear HCP teams,
I
Dear hcp teams，
I sorry to bother you again with same problem.
I used default options and mounted data successfully. But when I checked
/s3/hcp, I found that data in it has only 900 subjects. Obviously, it's not the
latest 1200-release data.
Since I want to analyse the latest version of
e 900 subjects release and the
1200 subjects release.
If the HCP_900 listing works, but the HCP_1200 listing does not, then we will
need to arrange for you to get different credentials.
Tim
On 05/15/2017 08:48 AM, Irisqql0922 wrote:
Dear hcp teams，
I sorry to bother you again with same pr
s3fs#hcp-openaccess:/HCP_1200
and then stop and restart the instance. Then I use command
mount /s3/hcp
It worked!!
But I still don't know why I failed when I used s3fs to mount data.
Best,
Qinqin Li
On 05/16/2017 02:43，Timothy Coalson wrote：
On Mon, May 15, 2017 at 8:48
s, but the HCP_1200 listing does not, then we will
need to arrange for you to get different credentials.
Tim
On 05/15/2017 08:48 AM, Irisqql0922 wrote:
Dear hcp teams，
I sorry to bother you again with same problem.
I used default options and mounted data successfully. But when I checked
e Key Laboratory of Cognitive Neuroscience and Learning
| |
Irisqql0922
|
|
irisqql0...@163.com
|
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