Hi All,
I would like to look at the *eddy *corrected diffusion images+bvecs, but
before the realignment to the T1w. Is it possible somehow?
Or maybe just the trafo file of b0 to T1w registration available somewhere?
Cheers,
Szabolcs
___
HCP-Users
gt;
> https://github.com/Washington-University/Pipelines/blob/
> 6e22e45a066df542660ad0cdb2e1cec6a373ecb4/DiffusionPreprocessing/
> scripts/run_eddy.sh#L523
>
>
>
> > On Feb 2, 2017, at 10:08 AM, Szabolcs David <davidszabolc...@gmail.com>
> wrote:
> >
> > Hi All
on gradients
> to the images, as really you need to apply them to the bvals and bvecs.
>
> Peace,
>
> Matt.
>
> From: <hcp-users-boun...@humanconnectome.org> on behalf of Szabolcs David
> <davidszabolc...@gmail.com>
> Date: Thursday, August 10, 2017 at 7:03
​Dear HCP Team,
I would like to use HCP diffusion data to do some diffusion tensor fitting
and subsequently calculate maps of FA, MD, etc. For this I think it would
be handy to use the followings:
$subject\T1w\Diffusion\bvals
$subject\T1w\Diffusion\bvecs
$subject\T1w\Diffusion\data.nii.gz
We can
Tel: 314-747-6173
>
> St. Louis, MO 63110 Email: mha...@wustl.edu
>
>
>
> *From: * on behalf of Szabolcs
> David
> *Date: *Sunday, January 6, 2019 at 6:36 AM
> *To: *"hcp-users@humanconnectome.org"
> *Subject: *[HCP-Users]
Hi All,
What was the order of the diffusion MRI data as an input for eddy?
According to the 'HCP_S1200_Release_Appendix_I.pdf' p46., image the acq
order was:
95 RL
95 LR
96 RL
96 LR
97 RL
97 LR
Based on the eddy log files the input order should be something like this
(the position of the b0
