Re: [HCP-Users] hcp_fix bug

2017-03-22 Thread Glasser, Matthew
ednesday, March 22, 2017 at 5:17 PM To: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org>> Subject: [HCP-Users] hcp_fix bug I am getting very similar errors to Nallin. Has

[HCP-Users] hcp_fix bug

2017-03-22 Thread Timothy Hendrickson
I am getting very similar errors to Nallin. Has this been resolved? Timothy Hendrickson Department of Psychiatry University of Minnesota Bioinformatics and Computational Biology M.S. Candidate Office: 612-624-6441 Mobile: 507-259-3434 (texts okay) ___

Re: [HCP-Users] hcp_fix bug

2016-10-19 Thread Glasser, Matthew
stl.edu>> Cc: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] hcp_fix bug Hi Matt, "... " in last Email refer to /home/fas/glahn/ny87/

Re: [HCP-Users] hcp_fix bug

2016-10-19 Thread Glasser, Matthew
;> Cc: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] hcp_fix bug Hi Matt, I added all the paths needed in fix_3_clean, but still get the error. Is it

Re: [HCP-Users] hcp_fix bug

2016-10-19 Thread ynailin
add path parts of the command. > > Peace, > > Matt. > > From: nailin yao <ynai...@gmail.com> > Date: Wednesday, October 19, 2016 at 4:02 PM > To: Matt Glasser <glass...@wustl.edu> > Cc: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.

Re: [HCP-Users] hcp_fix bug

2016-10-19 Thread Glasser, Matthew
umanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] hcp_fix bug Hi Matt, I tried to run fix_3_clean on matlab directly, and met the error message below: fix_3_clean('

Re: [HCP-Users] hcp_fix bug

2016-10-19 Thread nailin yao
fix_3_clean function with the parameters mentioned below? > > Peace, > > Matt. > > From: nailin yao <ynai...@gmail.com> > Date: Monday, October 17, 2016 at 2:58 PM > To: Matt Glasser <glass...@wustl.edu> > Cc: "hcp-users@humanconnectome.org" <hcp-u

Re: [HCP-Users] hcp_fix bug

2016-10-17 Thread Glasser, Matthew
hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: [HCP-Users] hcp_fix bug Hi , I received the bug report when running hcp_fix for the last step: running FIX

[HCP-Users] hcp_fix bug

2016-10-17 Thread nailin yao
Hi , I received the bug report when running hcp_fix for the last step: running FIX FIX Feature extraction for Melodic output directory: rfMRI_REST1_LR_nonlin_norm_hp2000.ica create edge masks run FAST registration of standard space masks extract features FIX Classifying components in