Re: [HCP-Users] MMP parcellation for 7T
In particular, if you are only tracking the parcels x parcels matrix, using the 59k surfaces should make effectively no difference. They mostly exist to try to capture the higher resolution fMRI data. Even if you were capturing per-vertex tractography counts, the uncertainty in the probabilistic tractography might render this higher resolution useless. Tim On Sun, Jun 2, 2019 at 7:38 PM Glasser, Matthew wrote: > If you haven’t run the analysis yet, I would encourage you to just use the > 32k meshes. No one has shown the 59k meshes to have a clear benefit and > they take up a lot more space. > > > > Matt. > > > > *From: *"Shadi, Kamal" > *Date: *Sunday, June 2, 2019 at 7:35 PM > *To: *"Glasser, Matthew" , " > hcp-users@humanconnectome.org" > *Subject: *Re: [HCP-Users] MMP parcellation for 7T > > > > I want to run probtrackx using 7T diffusion data and MMP parcellation and > since 7T data has 59k meshes I would like to have ROIs in a same mesh > resolution. > > > > Get Outlook for iOS <https://aka.ms/o0ukef> > > > -- > > *From:* Glasser, Matthew > *Sent:* Sunday, June 2, 2019 7:42 PM > *To:* Shadi, Kamal; hcp-users@humanconnectome.org > *Subject:* Re: [HCP-Users] MMP parcellation for 7T > > > > I take it you are using the experimental 59k surfaces, rather than the 32k > surfaces for general use? > > > > Matt. > > > > *From: *"Shadi, Kamal" > *Date: *Sunday, June 2, 2019 at 6:40 PM > *To: *"Glasser, Matthew" , " > hcp-users@humanconnectome.org" > *Subject: *Re: [HCP-Users] MMP parcellation for 7T > > > > Is there a recommended way to up-sample the MMP ROIs to 7T surfaces? > > > > Thanks, > > Kamal > > > > *From: *"Glasser, Matthew" > *Date: *Sunday, June 2, 2019 at 1:35 PM > *To: *"Shadi, Kamal" , " > hcp-users@humanconnectome.org" > *Subject: *Re: [HCP-Users] MMP parcellation for 7T > > > > There isn’t a separate 7T file yet. We do plan to investigate the > parcellation with 7T fMRI data. > > > > Matt. > > > > *From: * on behalf of "Shadi, > Kamal" > *Date: *Sunday, June 2, 2019 at 11:32 AM > *To: *"hcp-users@humanconnectome.org" > *Subject: *[HCP-Users] MMP parcellation for 7T > > > > Dear HCP Experts, > > > > Is there a *dlabel.nii* file containing 180 MMP ROIs per hemisphere for > 7T data release? I can find the file for 3T release in BALSA > (Q1-Q6_RelatedParcellation210.L.CorticalAreas_dil_Colors.32k_fs_LR.dlabel.nii) > but I could not find the similar file for 7T? > > > > Thanks in advance, > > Kamal > > > > > > ___ > HCP-Users mailing list > HCP-Users@humanconnectome.org > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > -- > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you > are not the intended recipient, be advised that any unauthorized use, > disclosure, copying or the taking of any action in reliance on the contents > of this information is strictly prohibited. If you have received this email > in error, please immediately notify the sender via telephone or return mail. > > > -- > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you > are not the intended recipient, be advised that any unauthorized use, > disclosure, copying or the taking of any action in reliance on the contents > of this information is strictly prohibited. If you have received this email > in error, please immediately notify the sender via telephone or return mail. > > > -- > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you > are not the intended recipient, be advised that any unauthorized use, > disclosure, copying or the taking of any action in reliance on the contents > of this information is strictly prohibited. If you have received this email > in error, please immediately notify the sender via telephone or return mail. > > ___ > HCP-Users mailing list > HCP-Users@humanconnectome.org > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
Re: [HCP-Users] MMP parcellation for 7T
With the 3T data. Matt. From: "Shadi, Kamal" Date: Sunday, June 2, 2019 at 8:00 PM To: "Glasser, Matthew" , "hcp-users@humanconnectome.org" Subject: Re: [HCP-Users] MMP parcellation for 7T I see. In that case, where should I find the 32k meshes for 7T? I only see 59k meshes in the 7T directory. Get Outlook for iOS<https://aka.ms/o0ukef> From: Glasser, Matthew Sent: Sunday, June 2, 2019 8:38 PM To: Shadi, Kamal; hcp-users@humanconnectome.org Subject: Re: [HCP-Users] MMP parcellation for 7T If you haven’t run the analysis yet, I would encourage you to just use the 32k meshes. No one has shown the 59k meshes to have a clear benefit and they take up a lot more space. Matt. From: "Shadi, Kamal" Date: Sunday, June 2, 2019 at 7:35 PM To: "Glasser, Matthew" , "hcp-users@humanconnectome.org" Subject: Re: [HCP-Users] MMP parcellation for 7T I want to run probtrackx using 7T diffusion data and MMP parcellation and since 7T data has 59k meshes I would like to have ROIs in a same mesh resolution. Get Outlook for iOS<https://aka.ms/o0ukef> From: Glasser, Matthew Sent: Sunday, June 2, 2019 7:42 PM To: Shadi, Kamal; hcp-users@humanconnectome.org Subject: Re: [HCP-Users] MMP parcellation for 7T I take it you are using the experimental 59k surfaces, rather than the 32k surfaces for general use? Matt. From: "Shadi, Kamal" Date: Sunday, June 2, 2019 at 6:40 PM To: "Glasser, Matthew" , "hcp-users@humanconnectome.org" Subject: Re: [HCP-Users] MMP parcellation for 7T Is there a recommended way to up-sample the MMP ROIs to 7T surfaces? Thanks, Kamal From: "Glasser, Matthew" Date: Sunday, June 2, 2019 at 1:35 PM To: "Shadi, Kamal" , "hcp-users@humanconnectome.org" Subject: Re: [HCP-Users] MMP parcellation for 7T There isn’t a separate 7T file yet. We do plan to investigate the parcellation with 7T fMRI data. Matt. From: on behalf of "Shadi, Kamal" Date: Sunday, June 2, 2019 at 11:32 AM To: "hcp-users@humanconnectome.org" Subject: [HCP-Users] MMP parcellation for 7T Dear HCP Experts, Is there a dlabel.nii file containing 180 MMP ROIs per hemisphere for 7T data release? I can find the file for 3T release in BALSA (Q1-Q6_RelatedParcellation210.L.CorticalAreas_dil_Colors.32k_fs_LR.dlabel.nii) but I could not find the similar file for 7T? Thanks in advance, Kamal ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
Re: [HCP-Users] MMP parcellation for 7T
If you haven’t run the analysis yet, I would encourage you to just use the 32k meshes. No one has shown the 59k meshes to have a clear benefit and they take up a lot more space. Matt. From: "Shadi, Kamal" Date: Sunday, June 2, 2019 at 7:35 PM To: "Glasser, Matthew" , "hcp-users@humanconnectome.org" Subject: Re: [HCP-Users] MMP parcellation for 7T I want to run probtrackx using 7T diffusion data and MMP parcellation and since 7T data has 59k meshes I would like to have ROIs in a same mesh resolution. Get Outlook for iOS<https://aka.ms/o0ukef> From: Glasser, Matthew Sent: Sunday, June 2, 2019 7:42 PM To: Shadi, Kamal; hcp-users@humanconnectome.org Subject: Re: [HCP-Users] MMP parcellation for 7T I take it you are using the experimental 59k surfaces, rather than the 32k surfaces for general use? Matt. From: "Shadi, Kamal" Date: Sunday, June 2, 2019 at 6:40 PM To: "Glasser, Matthew" , "hcp-users@humanconnectome.org" Subject: Re: [HCP-Users] MMP parcellation for 7T Is there a recommended way to up-sample the MMP ROIs to 7T surfaces? Thanks, Kamal From: "Glasser, Matthew" Date: Sunday, June 2, 2019 at 1:35 PM To: "Shadi, Kamal" , "hcp-users@humanconnectome.org" Subject: Re: [HCP-Users] MMP parcellation for 7T There isn’t a separate 7T file yet. We do plan to investigate the parcellation with 7T fMRI data. Matt. From: on behalf of "Shadi, Kamal" Date: Sunday, June 2, 2019 at 11:32 AM To: "hcp-users@humanconnectome.org" Subject: [HCP-Users] MMP parcellation for 7T Dear HCP Experts, Is there a dlabel.nii file containing 180 MMP ROIs per hemisphere for 7T data release? I can find the file for 3T release in BALSA (Q1-Q6_RelatedParcellation210.L.CorticalAreas_dil_Colors.32k_fs_LR.dlabel.nii) but I could not find the similar file for 7T? Thanks in advance, Kamal ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
Re: [HCP-Users] MMP parcellation for 7T
I take it you are using the experimental 59k surfaces, rather than the 32k surfaces for general use? Matt. From: "Shadi, Kamal" Date: Sunday, June 2, 2019 at 6:40 PM To: "Glasser, Matthew" , "hcp-users@humanconnectome.org" Subject: Re: [HCP-Users] MMP parcellation for 7T Is there a recommended way to up-sample the MMP ROIs to 7T surfaces? Thanks, Kamal From: "Glasser, Matthew" Date: Sunday, June 2, 2019 at 1:35 PM To: "Shadi, Kamal" , "hcp-users@humanconnectome.org" Subject: Re: [HCP-Users] MMP parcellation for 7T There isn’t a separate 7T file yet. We do plan to investigate the parcellation with 7T fMRI data. Matt. From: on behalf of "Shadi, Kamal" Date: Sunday, June 2, 2019 at 11:32 AM To: "hcp-users@humanconnectome.org" Subject: [HCP-Users] MMP parcellation for 7T Dear HCP Experts, Is there a dlabel.nii file containing 180 MMP ROIs per hemisphere for 7T data release? I can find the file for 3T release in BALSA (Q1-Q6_RelatedParcellation210.L.CorticalAreas_dil_Colors.32k_fs_LR.dlabel.nii) but I could not find the similar file for 7T? Thanks in advance, Kamal ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
Re: [HCP-Users] MMP parcellation for 7T
There isn’t a separate 7T file yet. We do plan to investigate the parcellation with 7T fMRI data. Matt. From: on behalf of "Shadi, Kamal" Date: Sunday, June 2, 2019 at 11:32 AM To: "hcp-users@humanconnectome.org" Subject: [HCP-Users] MMP parcellation for 7T Dear HCP Experts, Is there a dlabel.nii file containing 180 MMP ROIs per hemisphere for 7T data release? I can find the file for 3T release in BALSA (Q1-Q6_RelatedParcellation210.L.CorticalAreas_dil_Colors.32k_fs_LR.dlabel.nii) but I could not find the similar file for 7T? Thanks in advance, Kamal ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
