Re: [HCP-Users] NHP, Pediatric, No Fieldmap/T2w pipelines

[Glasser, Matthew]

There aren't any plans to allow processing without a field map as the resulting 
alignment between EPI and structural data will be poor.  Some folks have used 
mean field maps to try to remove a portion of the distortion, but I don't have 
the code for this.  As for processing without at T2w image, this is possible 
for legacy datasets if you modify the pipelines to only run the parts which do 
not require the T2w image, but this is not recommended for anything other than 
legacy data.

Peace,

Matt.

From: 
>
 on behalf of Anders Perrone >
Date: Wednesday, September 21, 2016 at 2:53 PM
To: "hcp-users@humanconnectome.org" 
>
Subject: [HCP-Users] NHP, Pediatric, No Fieldmap/T2w pipelines

Hi all,

I noticed in the FAQs there are plans to update the pipeline so we can process 
non-human primates (NHP), pediatric subjects, and subjects without a fieldmap. 
I was wondering what the status of these updates are. Are they currently in 
development and is there a timeline for release?

On a side is anyone developing a version that can run without a T2w or if the 
T2w is of poor quality?

Cheers,
Anders Perrone


Anders Perrone,
Research Assistant I
Fair Neuroimaging Lab

perro...@ohsu.edu
503-418-1897

Oregon Health & Science University
Mail code:L470
3181 SW Sam Jackson Park Road
Portland, Oregon 97239-3098

[cid:image001.png@01D21405.555065D0]

"If there is no solution to the problem then don't waste time worrying about 
it. If there is a solution to the problem then don't waste time worrying about 
it." - Dalai Lama XIV


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Re: [HCP-Users] NHP, Pediatric, No Fieldmap/T2w pipelines

[Harms, Michael]

Hi,
Where did you see mention of plans to enable processing of fMRI without a fieldmap?  We have always required fieldmaps for correcting the distortions in fMRI, and I don’t know of any plans to change that particular pipeline requirement.


cheers,
-MH





-- 
Michael Harms, Ph.D.

---
Conte Center for the Neuroscience of Mental Disorders
Washington University School of Medicine
Department of Psychiatry, Box 8134
660 South Euclid Ave. 
Tel: 314-747-6173
St. Louis, MO  63110 
Email: mha...@wustl.edu







From:  on behalf of Anders Perrone 
Date: Wednesday, September 21, 2016 at 2:53 PM
To: "hcp-users@humanconnectome.org" 
Subject: [HCP-Users] NHP, Pediatric, No Fieldmap/T2w pipelines








Hi all,
 
I noticed in the FAQs there are plans to update the pipeline so we can process non-human primates (NHP), pediatric subjects, and subjects without a fieldmap. I was wondering what the status of these updates are. Are they currently in development
 and is there a timeline for release?
 
On a side is anyone developing a version that can run without a T2w or if the T2w is of poor quality?
 
Cheers,
Anders Perrone
 
 
Anders Perrone,
Research Assistant I
Fair Neuroimaging Lab
 
perro...@ohsu.edu
503-418-1897
 
Oregon Health & Science University
Mail code:L470
3181 SW Sam Jackson Park Road
Portland, Oregon 97239-3098
 

 
“If there is no solution to the problem then don’t waste time worrying about it. If there is a solution to the problem then don’t waste time worrying about it.” – Dalai Lama XIV
 

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The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended
 recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone
 or return mail.
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