Joo-won,
We've recently created a "CREST" experiment for each released subject that
should give you access to intermediate/non-relased files in the database via
REST and for which you know the paths.
Here's an example for subject 100307 for one of the files you're interested in:
curl -s -k --cookie JSESSIONID=$DBSESSION
https://db.humanconnectome.org/data/projects/HCP_500/subjects/100307/experiments/100307_CREST/resources/100307_CREST/files/T1w/AverageT1wImages/ImToHalf0001.nii.gz
The JSESSIONID variable can be set via the following:
DBSESSION=`curl -s -u username:password -X GET
https://db.humanconnectome.org/data/JSESSIONID`;echo $DBSESSION
Regards,
Mike
From: hcp-users-boun...@humanconnectome.org
<hcp-users-boun...@humanconnectome.org> on behalf of Harms, Michael
<mha...@wustl.edu>
Sent: Wednesday, December 2, 2015 2:25 PM
To: Kim, Joo-won; hcp-users@humanconnectome.org
Subject: Re: [HCP-Users] Transformation matrices of HCP 500 Subject Release
Hi,
You should be able to obtain the files via REST calls into the database.
See previous post in the list archives for an example of how to do so.
cheers,
-MH
--
Michael Harms, Ph.D.
---
Conte Center for the Neuroscience of Mental Disorders
Washington University School of Medicine
Department of Psychiatry, Box 8134
660 South Euclid Ave.Tel: 314-747-6173
St. Louis, MO 63110Email: mha...@wustl.edu
On 12/2/15 1:58 PM, "Kim, Joo-won" <joo-won@mssm.edu> wrote:
Dear HCP,
Thank you for the HCP data. I have a request.
Could you release the transformation matrices from unprocessed images to
ACPC aligned images of the HCP 500 Subjects Release? I would like to
analyze both averaged and individual scans, but when I ran the
PreFreeSurfer, the ACPC-aligned images were shifted a little bit compared
to those in the released data. Specifically, could you provide the
following files corresponding to the subjects in the attachment?
T1w/AverageT1wImages/ToHalfTrans000?.mat or
T1w/AverageT1wImages/ImToHalf000?.nii.gz
T1w/xfms/acpc.mat
T2w/AverageT2wImages/ToHalfTrans000?.mat or
T2w/AverageT2wImages/ImToHalf000?.nii.gz
T2w/xfms/acpc.mat
T2w/T2wToT1wReg/T2w2T1w.mat
Best,
Joo-won
--
Joo-won Kim
Postdoctoral Fellow
Translational and Molecular Imaging Institute
Department of Radiology
Icahn School of Medicine at Mount Sinai
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