Re: [HCP-Users] how to map cortical thickness data to 180 parcellation (Glasser et al, Nature)

[Timothy Coalson]

After resampling, you can use -cifti-create-dense-from-template to make the
cifti file containing thickness data.  Then you can use -cifti-parcellate
as suggested.

Tim


On Thu, Oct 13, 2016 at 10:19 AM, Harms, Michael  wrote:

>
> Hi,
> See this FAQ:
> https://wiki.humanconnectome.org/display/PublicData/HCP+
> Users+FAQ#HCPUsersF
> AQ-9.HowdoImapdatabetweenFreeSurferandHCP?
>
> That, plus -cifti-parcellate (applied to the cifti version of the
> thickness data), should do the trick.
>
> cheers,
> -MH
>
> --
> Michael Harms, Ph.D.
>
> ---
> Conte Center for the Neuroscience of Mental Disorders
> Washington University School of Medicine
> Department of Psychiatry, Box 8134
> 660 South Euclid Ave.Tel: 314-747-6173
> St. Louis, MO  63110Email: mha...@wustl.edu
>
>
>
>
> On 10/13/16, 10:11 AM, "hcp-users-boun...@humanconnectome.org on behalf of
> 姚永成"  yao_yongch...@icloud.com> wrote:
>
> Dear HCP users,
>
> I am new to HCP Pipelines and I wonder whether can I map cortical
> thickness data to 180 parcellation featured on nature. I have already
> calculated cortical thickness using freesurfer, then I want to calculate
> the average cortical thickness of each brain area.
>
> The latest 180 parcellation (Glasser et al) is more accurate and robusted,
> so I want to use this atlas instead of others I always use.
> Thanks a lot!
>
> Best regards,
> YC YAO
> ___
> HCP-Users mailing list
> HCP-Users@humanconnectome.org
> http://lists.humanconnectome.org/mailman/listinfo/hcp-users
>
>
> 
> The materials in this message are private and may contain Protected
> Healthcare Information or other information of a sensitive nature. If you
> are not the intended recipient, be advised that any unauthorized use,
> disclosure, copying or the taking of any action in reliance on the contents
> of this information is strictly prohibited. If you have received this email
> in error, please immediately notify the sender via telephone or return mail.
>
> ___
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> HCP-Users@humanconnectome.org
> http://lists.humanconnectome.org/mailman/listinfo/hcp-users
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Re: [HCP-Users] how to map cortical thickness data to 180 parcellation (Glasser et al, Nature)

[Harms, Michael]

Hi,
See this FAQ:
https://wiki.humanconnectome.org/display/PublicData/HCP+Users+FAQ#HCPUsersF
AQ-9.HowdoImapdatabetweenFreeSurferandHCP?

That, plus -cifti-parcellate (applied to the cifti version of the
thickness data), should do the trick.

cheers,
-MH

--
Michael Harms, Ph.D.

---
Conte Center for the Neuroscience of Mental Disorders
Washington University School of Medicine
Department of Psychiatry, Box 8134
660 South Euclid Ave.Tel: 314-747-6173
St. Louis, MO  63110Email: mha...@wustl.edu




On 10/13/16, 10:11 AM, "hcp-users-boun...@humanconnectome.org on behalf of
姚永成"  wrote:

Dear HCP users,

I am new to HCP Pipelines and I wonder whether can I map cortical
thickness data to 180 parcellation featured on nature. I have already
calculated cortical thickness using freesurfer, then I want to calculate
the average cortical thickness of each brain area.

The latest 180 parcellation (Glasser et al) is more accurate and robusted,
so I want to use this atlas instead of others I always use.
Thanks a lot!

Best regards,
YC YAO
___
HCP-Users mailing list
HCP-Users@humanconnectome.org
http://lists.humanconnectome.org/mailman/listinfo/hcp-users



The materials in this message are private and may contain Protected Healthcare 
Information or other information of a sensitive nature. If you are not the 
intended recipient, be advised that any unauthorized use, disclosure, copying 
or the taking of any action in reliance on the contents of this information is 
strictly prohibited. If you have received this email in error, please 
immediately notify the sender via telephone or return mail.

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