Re: leaky pipelines and Guix

2016-03-07 Thread myglc2
l...@gnu.org (Ludovic Courtès) writes: > myglc2 skribis: > >> l...@gnu.org (Ludovic Courtès) writes: > > [...] > >>> Perhaps as a first step you could try and write a procedure and a CLI >>> around it that simply runs a given pipeline: >>> >>> $ guix biopipeline foo frog.dna

Re: leaky pipelines and Guix

2016-03-07 Thread Ludovic Courtès
myglc2 skribis: > l...@gnu.org (Ludovic Courtès) writes: [...] >> Perhaps as a first step you could try and write a procedure and a CLI >> around it that simply runs a given pipeline: >> >> $ guix biopipeline foo frog.dna human.dna >> … >> /gnu/store/…-freak.dna >> >>

Re: leaky pipelines and Guix

2016-02-12 Thread Ludovic Courtès
Ricardo Wurmus skribis: > So, how could I package something like that? Is packaging the wrong > approach here and should I really just be using “guix environment” to > prepare a suitable environment, run the pipeline, and then exit? Maybe packages are the wrong